Wall clock time and date at job start Fri Apr 10 2020 17:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47728 * 2 1 4 4 C 1.53003 * 109.47074 * 240.00009 * 2 1 3 5 5 C 1.50703 * 109.46819 * 65.00498 * 4 2 1 6 6 H 1.08005 * 120.00140 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99958 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00342 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99782 * 179.72264 * 7 5 4 10 10 H 1.48495 * 109.47179 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46809 * 119.99918 * 9 7 5 12 12 H 1.48500 * 109.47007 * 239.99668 * 9 7 5 13 13 C 1.53001 * 109.47109 * 120.00764 * 2 1 3 14 14 N 1.46898 * 109.46605 * 293.79616 * 13 2 1 15 15 C 1.48529 * 111.00606 * 294.15933 * 14 13 2 16 16 C 1.54931 * 103.23218 * 200.28188 * 15 14 13 17 17 C 1.54596 * 102.92288 * 37.41534 * 16 15 14 18 18 H 1.08998 * 110.31325 * 96.95585 * 17 16 15 19 19 N 1.46903 * 110.30988 * 219.12991 * 17 16 15 20 20 C 1.48532 * 110.99954 * 197.76109 * 19 17 16 21 21 C 1.54937 * 103.22738 * 159.71872 * 20 19 17 22 22 C 1.54601 * 102.92038 * 322.58670 * 21 20 19 23 23 C 1.47901 * 110.99566 * 315.15894 * 19 17 16 24 24 C 1.47903 * 110.99713 * 176.76483 * 14 13 2 25 25 H 1.08999 * 109.92344 * 26.49304 * 24 14 13 26 26 C 1.52999 * 109.91670 * 265.19730 * 24 14 13 27 27 H 1.09000 * 109.46881 * 54.84894 * 1 2 3 28 28 H 1.08998 * 109.47200 * 174.85109 * 1 2 3 29 29 H 1.08996 * 109.46920 * 294.84984 * 1 2 3 30 30 H 1.08996 * 109.47558 * 305.00864 * 4 2 1 31 31 H 1.08997 * 109.47238 * 184.99820 * 4 2 1 32 32 H 0.97002 * 120.00404 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47409 * 53.79545 * 13 2 1 34 34 H 1.09005 * 109.47249 * 173.80078 * 13 2 1 35 35 H 1.09005 * 110.66835 * 318.71890 * 15 14 13 36 36 H 1.08998 * 110.66647 * 81.84391 * 15 14 13 37 37 H 1.09007 * 110.72637 * 155.76937 * 16 15 14 38 38 H 1.09000 * 110.72283 * 278.87721 * 16 15 14 39 39 H 1.08995 * 110.66699 * 278.15101 * 20 19 17 40 40 H 1.09003 * 110.66882 * 41.28594 * 20 19 17 41 41 H 1.08993 * 110.72586 * 204.22974 * 21 20 19 42 42 H 1.09001 * 110.87859 * 81.01365 * 21 20 19 43 43 H 1.08998 * 110.31015 * 263.04101 * 22 21 20 44 44 H 1.08996 * 110.38905 * 140.91745 * 22 21 20 45 45 H 1.08995 * 109.91780 * 333.50372 * 23 19 17 46 46 H 1.08992 * 109.91690 * 94.60830 * 23 19 17 47 47 H 1.09005 * 109.47539 * 48.12408 * 26 24 14 48 48 H 1.09006 * 109.47329 * 168.12442 * 26 24 14 49 49 H 1.08999 * 109.47206 * 288.12510 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0800 0.9744 -2.3757 7 6 1.9924 -0.4021 -3.7283 8 7 2.6754 -1.5191 -3.8513 9 14 1.4915 0.5589 -5.2500 10 1 0.7301 1.7673 -4.8440 11 1 2.7067 0.9675 -5.9995 12 1 0.6393 -0.2948 -6.1162 13 6 2.0400 -0.7214 1.2492 14 7 1.6763 0.0520 2.4439 15 6 2.3856 1.3567 2.4698 16 6 2.3153 1.7690 3.9616 17 6 2.4909 0.4227 4.7010 18 1 3.5303 0.2882 5.0004 19 7 1.6097 0.3671 5.8751 20 6 2.0493 -0.6904 6.8209 21 6 1.3897 -0.2672 8.1575 22 6 1.5001 1.2745 8.1245 23 6 1.6597 1.6346 6.6357 24 6 2.0859 -0.6541 3.6773 25 1 2.9346 -1.3053 3.4680 26 6 0.9152 -1.4757 4.2207 27 1 -0.3633 0.5917 -0.8403 28 1 -0.3633 -1.0235 -0.0922 29 1 -0.3633 0.4319 0.9325 30 1 1.6053 -1.7197 -1.2953 31 1 3.1263 -0.7995 -1.2057 32 1 2.9227 -1.8420 -4.7320 33 1 1.5888 -1.7120 1.3063 34 1 3.1244 -0.8185 1.1954 35 1 3.4214 1.2379 2.1519 36 1 1.8715 2.0865 1.8444 37 1 3.1254 2.4545 4.2110 38 1 1.3485 2.2161 4.1931 39 1 1.6832 -1.6668 6.5035 40 1 3.1354 -0.6969 6.9131 41 1 1.9398 -0.6752 9.0053 42 1 0.3456 -0.5785 8.1911 43 1 2.3726 1.6035 8.6889 44 1 0.5955 1.7287 8.5287 45 1 2.6183 2.1273 6.4737 46 1 0.8477 2.2894 6.3199 47 1 0.4714 -2.0554 3.4113 48 1 1.2748 -2.1515 4.9967 49 1 0.1654 -0.8058 4.6413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602657114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:22 Heat of formation + Delta-G solvation = -15.048199 kcal Electronic energy + Delta-G solvation = -23099.376003 eV Core-core repulsion = 20060.033922 eV Total energy + Delta-G solvation = -3039.342081 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.08251 -38.97840 -36.83135 -34.55025 -32.93058 -32.54367 -30.03108 -29.50749 -28.63361 -26.58543 -26.20595 -24.55201 -22.95871 -22.27664 -21.16712 -20.55202 -20.03974 -18.54583 -17.43400 -16.98320 -16.72267 -16.41181 -15.95307 -15.62085 -15.02243 -14.91057 -14.60829 -14.49382 -14.10698 -13.86752 -13.61572 -13.36501 -13.14807 -13.11441 -12.83278 -12.72661 -12.68703 -12.46590 -12.37253 -12.21219 -12.14503 -11.92802 -11.84358 -11.77785 -11.66050 -11.49616 -11.37499 -11.29208 -11.06078 -10.85327 -10.54332 -9.35429 -9.19841 -8.17812 -6.27016 1.39328 1.39937 1.53183 2.41673 2.95295 3.07783 3.15537 3.51907 3.72208 3.79348 3.98275 4.10861 4.16104 4.21461 4.28266 4.32322 4.40328 4.52117 4.53435 4.57288 4.65733 4.69835 4.77891 4.78512 4.87478 4.88977 4.95072 4.96628 5.02763 5.04113 5.06183 5.16195 5.17671 5.22011 5.28500 5.34096 5.37575 5.46935 5.48580 5.55563 5.66322 5.79461 5.88314 5.99548 6.11395 6.13720 6.20474 6.32550 6.88925 7.41322 8.94611 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.043549 B = 0.003119 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.792511 B = 8974.896732 C = 9197.990764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.068 4.068 3 H 0.053 0.947 4 C 0.034 3.966 5 C -0.526 4.526 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.067 3.933 14 N -0.507 5.507 15 C 0.033 3.967 16 C -0.107 4.107 17 C 0.077 3.923 18 H 0.050 0.950 19 N -0.508 5.508 20 C 0.023 3.977 21 C -0.119 4.119 22 C -0.128 4.128 23 C 0.034 3.966 24 C 0.068 3.932 25 H 0.036 0.964 26 C -0.115 4.115 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.065 0.935 30 H -0.011 1.011 31 H -0.017 1.017 32 H 0.262 0.738 33 H 0.062 0.938 34 H 0.017 0.983 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.045 0.955 46 H 0.076 0.924 47 H 0.031 0.969 48 H 0.064 0.936 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.109 5.311 25.735 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.061 4.061 14 N -0.231 5.231 15 C -0.095 4.095 16 C -0.145 4.145 17 C -0.033 4.033 18 H 0.068 0.932 19 N -0.233 5.233 20 C -0.104 4.104 21 C -0.157 4.157 22 C -0.166 4.166 23 C -0.094 4.094 24 C -0.041 4.041 25 H 0.054 0.946 26 C -0.173 4.173 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.007 0.993 31 H 0.002 0.998 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.050 0.950 48 H 0.083 0.917 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.129 5.172 25.400 26.008 hybrid contribution 1.895 -0.027 -1.211 2.249 sum -0.234 5.145 24.189 24.731 Atomic orbital electron populations 1.21450 0.94691 1.00183 1.00438 1.20972 0.96648 0.98345 0.92770 0.92861 1.19019 0.93901 0.94656 0.92825 1.21650 1.34269 1.08511 0.92021 0.92151 1.25964 0.95272 0.96108 1.02676 1.70111 1.40432 1.22961 1.24216 0.85447 0.78102 0.78887 0.78926 1.18547 1.20463 1.20507 1.22169 0.96585 0.97095 0.90272 1.64723 1.54195 1.03314 1.00861 1.23202 0.96391 0.92279 0.97642 1.22585 1.03198 0.95933 0.92830 1.22565 0.93977 0.95310 0.91427 0.93237 1.64856 1.48405 1.04528 1.05465 1.23531 0.97863 0.96628 0.92363 1.22460 1.01520 0.95356 0.96380 1.22395 1.02769 0.96326 0.95131 1.22873 1.00861 0.92239 0.93391 1.22405 0.97046 0.94941 0.89659 0.94626 1.21643 0.97941 0.98599 0.99098 0.94346 0.94787 0.91618 0.99282 0.99822 0.92942 0.91916 0.96461 0.94635 0.90332 0.89810 0.89757 0.89450 0.94009 0.89969 0.90880 0.90879 0.90433 0.93700 0.90574 0.95003 0.91701 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.44 8.87 71.98 0.64 -3.80 16 2 C -0.07 -2.94 2.30 -10.79 -0.02 -2.97 16 3 H 0.05 2.30 6.83 -2.39 -0.02 2.28 16 4 C 0.03 1.82 4.45 29.85 0.13 1.96 16 5 C -0.53 -30.47 8.47 25.60 0.22 -30.26 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 8 N -0.94 -58.24 13.29 21.45 0.28 -57.95 16 9 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 C 0.07 2.49 4.07 86.30 0.35 2.84 16 14 N -0.51 -15.57 4.35 -858.09 -3.73 -19.30 16 15 C 0.03 0.91 5.65 86.65 0.49 1.40 16 16 C -0.11 -2.28 5.39 31.80 0.17 -2.11 16 17 C 0.08 1.65 2.64 45.80 0.12 1.77 16 18 H 0.05 1.04 7.72 -2.39 -0.02 1.02 16 19 N -0.51 -9.48 3.40 -852.73 -2.90 -12.38 16 20 C 0.02 0.37 5.93 86.65 0.51 0.88 16 21 C -0.12 -1.46 7.06 31.80 0.22 -1.23 16 22 C -0.13 -1.52 6.93 31.48 0.22 -1.30 16 23 C 0.03 0.52 5.42 86.45 0.47 0.99 16 24 C 0.07 1.79 3.06 45.06 0.14 1.93 16 25 H 0.04 0.99 7.77 -2.39 -0.02 0.97 16 26 C -0.12 -2.82 8.32 71.98 0.60 -2.22 16 27 H 0.04 1.61 7.11 -2.39 -0.02 1.59 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 2.36 7.66 -2.39 -0.02 2.34 16 30 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 32 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.02 0.67 7.99 -2.38 -0.02 0.65 16 35 H 0.04 1.03 7.91 -2.38 -0.02 1.01 16 36 H 0.08 2.27 7.55 -2.39 -0.02 2.25 16 37 H 0.08 1.48 8.11 -2.38 -0.02 1.46 16 38 H 0.08 1.82 7.20 -2.39 -0.02 1.80 16 39 H 0.09 1.41 5.53 -2.39 -0.01 1.39 16 40 H 0.04 0.65 7.74 -2.39 -0.02 0.63 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.04 0.67 7.33 -2.39 -0.02 0.65 16 46 H 0.08 1.21 7.75 -2.39 -0.02 1.20 16 47 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 48 H 0.06 1.34 5.71 -2.38 -0.01 1.33 16 49 H 0.07 1.93 7.05 -2.39 -0.02 1.91 16 Total: -1.00 -64.28 361.53 1.28 -63.01 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.88 Total: 11.22 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 4.72 Total: -31.86 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -6.35 Total: -89.64 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.28 1.28 -63.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602657114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.957 kcal (2) G-P(sol) polarization free energy of solvation -64.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds