Wall clock time and date at job start Fri Apr 10 2020 17:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46893 * 2 1 4 4 C 1.52998 * 109.47116 * 239.99964 * 2 1 3 5 5 C 1.50707 * 109.47016 * 60.85422 * 4 2 1 6 6 H 1.07994 * 119.99702 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99721 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99486 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00180 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47045 * 90.00195 * 9 7 5 11 11 H 1.48498 * 109.47172 * 210.00149 * 9 7 5 12 12 H 1.48497 * 109.47092 * 330.00554 * 9 7 5 13 13 C 1.53002 * 109.46973 * 119.99860 * 2 1 3 14 14 N 1.46899 * 109.46897 * 187.22795 * 13 2 1 15 15 C 1.48537 * 110.99852 * 259.03776 * 14 13 2 16 16 C 1.54943 * 103.22772 * 159.72136 * 15 14 13 17 17 H 1.09000 * 110.72046 * 81.12109 * 16 15 14 18 18 N 1.46897 * 110.72524 * 204.22732 * 16 15 14 19 19 C 1.47838 * 110.99939 * 177.70605 * 18 16 15 20 20 C 1.54908 * 104.79706 * 146.36364 * 19 18 16 21 21 C 1.55134 * 101.65231 * 322.92642 * 20 19 18 22 22 C 1.47450 * 110.99814 * 298.54681 * 18 16 15 23 23 C 1.54591 * 102.92110 * 322.58567 * 16 15 14 24 24 C 1.47902 * 111.00323 * 16.43088 * 14 13 2 25 25 H 1.09002 * 109.91901 * 333.70887 * 24 14 13 26 26 C 1.52998 * 109.91732 * 94.80021 * 24 14 13 27 27 H 1.09008 * 109.47065 * 294.91379 * 1 2 3 28 28 H 1.09003 * 109.47062 * 54.91033 * 1 2 3 29 29 H 1.08999 * 109.47210 * 174.91558 * 1 2 3 30 30 H 1.08995 * 109.47365 * 180.85562 * 4 2 1 31 31 H 1.08996 * 109.47317 * 300.85434 * 4 2 1 32 32 H 0.97005 * 119.99547 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.46685 * 67.23094 * 13 2 1 34 34 H 1.09000 * 109.47142 * 307.22552 * 13 2 1 35 35 H 1.08999 * 110.66617 * 41.28726 * 15 14 13 36 36 H 1.09004 * 110.81013 * 278.22163 * 15 14 13 37 37 H 1.08998 * 110.37906 * 27.53386 * 19 18 16 38 38 H 1.09005 * 110.36990 * 265.18577 * 19 18 16 39 39 H 1.08998 * 110.99177 * 204.83591 * 20 19 18 40 40 H 1.08997 * 110.99279 * 81.01893 * 20 19 18 41 41 H 1.09001 * 110.70485 * 154.03556 * 21 20 19 42 42 H 1.09004 * 110.70603 * 277.09732 * 21 20 19 43 43 H 1.08995 * 109.88856 * 117.33896 * 22 18 16 44 44 H 1.09006 * 110.02358 * 356.22248 * 22 18 16 45 45 H 1.08997 * 110.31363 * 140.87242 * 23 16 15 46 46 H 1.09006 * 110.30788 * 263.04403 * 23 16 15 47 47 H 1.09007 * 109.46903 * 60.00568 * 26 24 14 48 48 H 1.08994 * 109.47563 * 179.97438 * 26 24 14 49 49 H 1.09002 * 109.47525 * 300.00514 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5550 0.0013 -2.4796 6 1 0.9445 0.8866 -2.3804 7 6 1.8907 -0.4679 -3.7319 8 7 1.4679 0.1629 -4.8056 9 14 2.9473 -1.9988 -3.9034 10 1 2.0744 -3.1989 -3.9603 11 1 3.7487 -1.9100 -5.1504 12 1 3.8586 -2.1046 -2.7357 13 6 2.0400 -0.7212 1.2493 14 7 3.4986 -0.5721 1.3396 15 6 4.1893 -1.8006 0.8702 16 6 5.6169 -1.2992 0.5367 17 1 6.2211 -1.2264 1.4409 18 7 6.2606 -2.1800 -0.4470 19 6 7.6023 -1.6767 -0.8107 20 6 8.4459 -2.9501 -1.0686 21 6 7.8984 -3.9138 0.0168 22 6 6.4002 -3.5494 0.0816 23 6 5.3593 0.1001 -0.0679 24 6 3.9753 0.5187 0.4619 25 1 3.2828 0.6567 -0.3685 26 6 4.0943 1.8172 1.2621 27 1 -0.3633 0.4329 0.9321 28 1 -0.3633 0.5908 -0.8409 29 1 -0.3633 -1.0236 -0.0911 30 1 3.1298 -0.7346 -1.2416 31 1 1.6642 -1.7444 -1.2569 32 1 1.7038 -0.1674 -5.6866 33 1 1.7861 -1.7794 1.1869 34 1 1.5749 -0.2874 2.1345 35 1 3.7034 -2.1985 -0.0206 36 1 4.2201 -2.5527 1.6586 37 1 8.0270 -1.1001 0.0110 38 1 7.5475 -1.0687 -1.7137 39 1 9.5071 -2.7529 -0.9162 40 1 8.2632 -3.3438 -2.0684 41 1 8.0296 -4.9521 -0.2881 42 1 8.3841 -3.7307 0.9753 43 1 5.8231 -4.2433 -0.5294 44 1 6.0535 -3.5880 1.1143 45 1 6.1214 0.8034 0.2677 46 1 5.3470 0.0455 -1.1565 47 1 4.8030 1.6772 2.0785 48 1 4.4464 2.6156 0.6090 49 1 3.1190 2.0839 1.6694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602662497.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:27 Heat of formation + Delta-G solvation = 18.781049 kcal Electronic energy + Delta-G solvation = -24334.016645 eV Core-core repulsion = 21296.141511 eV Total energy + Delta-G solvation = -3037.875135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.09299 -38.34771 -34.93395 -32.55414 -31.74387 -31.09711 -28.97792 -28.53779 -27.52537 -25.52239 -24.06706 -23.03978 -21.80375 -21.13905 -20.09406 -19.68039 -18.02957 -16.76004 -16.55146 -16.07440 -15.24492 -14.76767 -14.54860 -13.96796 -13.58561 -13.53402 -13.30056 -12.99512 -12.81578 -12.70070 -12.46000 -12.15876 -12.04073 -11.79833 -11.49371 -11.32869 -11.18554 -11.13385 -11.03434 -10.92438 -10.86835 -10.76374 -10.60650 -10.44594 -10.22962 -10.02333 -9.69445 -9.56903 -9.43522 -9.05794 -8.47800 -8.16876 -7.73153 -5.98987 -3.96655 3.37484 3.46121 3.58570 3.91876 4.52785 4.53477 4.54379 4.70494 4.89110 4.95355 5.06439 5.28254 5.34344 5.38809 5.45012 5.56348 5.58000 5.65219 5.68750 5.74426 5.77354 5.78233 5.92225 5.96132 5.98759 6.01856 6.03689 6.12811 6.17982 6.19420 6.25370 6.27595 6.38229 6.40149 6.49695 6.53690 6.80308 6.81178 6.96442 7.04900 7.07035 7.20651 7.32241 7.38672 7.44802 7.59374 7.84828 8.58499 9.05597 9.64419 11.13759 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.007511 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.575799 B = 3727.116392 C = 4938.250258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.113 4.113 3 H 0.076 0.924 4 C -0.019 4.019 5 C -0.514 4.514 6 H 0.072 0.928 7 C 0.068 3.932 8 N -0.905 5.905 9 Si 0.865 3.135 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.247 1.247 13 C 0.047 3.953 14 N -0.510 5.510 15 C 0.039 3.961 16 C 0.079 3.921 17 H 0.048 0.952 18 N -0.521 5.521 19 C 0.044 3.956 20 C -0.130 4.130 21 C -0.141 4.141 22 C 0.041 3.959 23 C -0.116 4.116 24 C 0.022 3.978 25 H 0.120 0.880 26 C -0.130 4.130 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.007 0.993 32 H 0.261 0.739 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.049 0.951 48 H 0.052 0.948 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.425 -4.553 12.283 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.132 4.132 3 H 0.094 0.906 4 C -0.055 4.055 5 C -0.552 4.552 6 H 0.090 0.910 7 C -0.133 4.133 8 N -0.544 5.544 9 Si 0.692 3.308 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.170 1.170 13 C -0.081 4.081 14 N -0.234 5.234 15 C -0.089 4.089 16 C -0.030 4.030 17 H 0.066 0.934 18 N -0.245 5.245 19 C -0.083 4.083 20 C -0.168 4.168 21 C -0.180 4.180 22 C -0.087 4.087 23 C -0.154 4.154 24 C -0.086 4.086 25 H 0.137 0.863 26 C -0.187 4.187 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.218 -4.445 12.225 17.177 hybrid contribution 0.744 -1.063 -0.413 1.361 sum 11.962 -5.508 11.812 17.690 Atomic orbital electron populations 1.21652 0.95612 1.01292 1.00188 1.21677 0.95970 1.00406 0.95161 0.90641 1.19936 0.96864 0.95402 0.93345 1.21103 1.32534 1.12643 0.88931 0.90974 1.24997 0.95583 0.96746 0.95927 1.69920 1.46238 1.40391 0.97856 0.86961 0.81537 0.83714 0.78555 1.20873 1.21753 1.17010 1.22446 0.87660 1.00149 0.97871 1.64927 1.05627 1.03372 1.49482 1.23336 0.93085 0.93182 0.99285 1.22672 0.94881 0.93147 0.92301 0.93391 1.63627 1.19628 1.01506 1.39774 1.23008 0.87875 0.96809 1.00632 1.22706 0.98967 0.95551 0.99586 1.22776 0.96193 1.00015 0.98990 1.22815 0.95635 0.91073 0.99151 1.22489 0.96795 0.94477 1.01664 1.23205 0.96681 0.91808 0.96896 0.86279 1.21714 1.01376 0.96111 0.99544 0.94831 0.91631 0.93695 0.95013 0.97516 0.92930 0.92450 0.91673 0.91516 0.91377 0.93764 0.90171 0.91100 0.90652 0.90975 0.91759 0.90644 0.92644 0.92003 0.90152 0.93165 0.92858 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.85 37.16 0.33 -2.09 16 2 C -0.11 -2.20 1.85 -90.62 -0.17 -2.36 16 3 H 0.08 1.51 5.70 -51.93 -0.30 1.21 16 4 C -0.02 -0.43 1.85 -27.88 -0.05 -0.48 16 5 C -0.51 -14.29 9.00 -34.44 -0.31 -14.60 16 6 H 0.07 2.16 7.02 -52.49 -0.37 1.79 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 9 Si 0.87 21.99 27.47 -169.99 -4.67 17.32 16 10 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.25 -6.06 6.54 56.52 0.37 -5.69 16 13 C 0.05 0.79 5.43 -3.82 -0.02 0.77 16 14 N -0.51 -8.41 5.17 -222.56 -1.15 -9.56 16 15 C 0.04 0.64 4.61 -1.89 -0.01 0.63 16 16 C 0.08 1.19 2.32 -65.85 -0.15 1.04 16 17 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 18 N -0.52 -7.76 5.00 -221.07 -1.10 -8.87 16 19 C 0.04 0.56 6.09 -2.30 -0.01 0.55 16 20 C -0.13 -1.38 7.08 -24.60 -0.17 -1.55 16 21 C -0.14 -1.44 6.94 -24.91 -0.17 -1.61 16 22 C 0.04 0.52 6.36 -2.83 -0.02 0.50 16 23 C -0.12 -1.86 5.23 -25.38 -0.13 -1.99 16 24 C 0.02 0.37 1.65 -66.64 -0.11 0.26 16 25 H 0.12 2.39 2.99 -51.93 -0.16 2.23 16 26 C -0.13 -1.90 9.07 37.16 0.34 -1.57 16 27 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.06 1.36 6.85 -51.93 -0.36 1.00 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.75 3.41 -51.93 -0.18 0.57 16 31 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.06 0.96 7.63 -51.93 -0.40 0.57 16 34 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 35 H 0.07 1.26 6.25 -51.93 -0.32 0.94 16 36 H 0.07 1.00 7.63 -51.93 -0.40 0.60 16 37 H 0.04 0.52 7.78 -51.93 -0.40 0.12 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.67 6.82 -51.93 -0.35 0.31 16 45 H 0.06 0.88 7.69 -51.93 -0.40 0.48 16 46 H 0.08 1.48 7.98 -51.93 -0.41 1.06 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.05 0.77 8.01 -51.93 -0.42 0.35 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -29.96 353.43 -10.68 -40.63 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -9.09 Total: 3.01 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -0.76 Total: -20.62 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -1.48 Total: -45.66 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.96 -10.68 -40.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602662497.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.415 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds