Wall clock time and date at job start Fri Apr 10 2020 17:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46893 * 2 1 4 4 C 1.52998 * 109.47116 * 239.99964 * 2 1 3 5 5 C 1.50707 * 109.47016 * 60.85422 * 4 2 1 6 6 H 1.07994 * 119.99702 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99721 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99486 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00180 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47045 * 90.00195 * 9 7 5 11 11 H 1.48498 * 109.47172 * 210.00149 * 9 7 5 12 12 H 1.48497 * 109.47092 * 330.00554 * 9 7 5 13 13 C 1.53002 * 109.46973 * 119.99860 * 2 1 3 14 14 N 1.46899 * 109.46897 * 187.22795 * 13 2 1 15 15 C 1.48537 * 110.99852 * 259.03776 * 14 13 2 16 16 C 1.54943 * 103.22772 * 159.72136 * 15 14 13 17 17 H 1.09000 * 110.72046 * 81.12109 * 16 15 14 18 18 N 1.46897 * 110.72524 * 204.22732 * 16 15 14 19 19 C 1.47838 * 110.99939 * 177.70605 * 18 16 15 20 20 C 1.54908 * 104.79706 * 146.36364 * 19 18 16 21 21 C 1.55134 * 101.65231 * 322.92642 * 20 19 18 22 22 C 1.47450 * 110.99814 * 298.54681 * 18 16 15 23 23 C 1.54591 * 102.92110 * 322.58567 * 16 15 14 24 24 C 1.47902 * 111.00323 * 16.43088 * 14 13 2 25 25 H 1.09002 * 109.91901 * 333.70887 * 24 14 13 26 26 C 1.52998 * 109.91732 * 94.80021 * 24 14 13 27 27 H 1.09008 * 109.47065 * 294.91379 * 1 2 3 28 28 H 1.09003 * 109.47062 * 54.91033 * 1 2 3 29 29 H 1.08999 * 109.47210 * 174.91558 * 1 2 3 30 30 H 1.08995 * 109.47365 * 180.85562 * 4 2 1 31 31 H 1.08996 * 109.47317 * 300.85434 * 4 2 1 32 32 H 0.97005 * 119.99547 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.46685 * 67.23094 * 13 2 1 34 34 H 1.09000 * 109.47142 * 307.22552 * 13 2 1 35 35 H 1.08999 * 110.66617 * 41.28726 * 15 14 13 36 36 H 1.09004 * 110.81013 * 278.22163 * 15 14 13 37 37 H 1.08998 * 110.37906 * 27.53386 * 19 18 16 38 38 H 1.09005 * 110.36990 * 265.18577 * 19 18 16 39 39 H 1.08998 * 110.99177 * 204.83591 * 20 19 18 40 40 H 1.08997 * 110.99279 * 81.01893 * 20 19 18 41 41 H 1.09001 * 110.70485 * 154.03556 * 21 20 19 42 42 H 1.09004 * 110.70603 * 277.09732 * 21 20 19 43 43 H 1.08995 * 109.88856 * 117.33896 * 22 18 16 44 44 H 1.09006 * 110.02358 * 356.22248 * 22 18 16 45 45 H 1.08997 * 110.31363 * 140.87242 * 23 16 15 46 46 H 1.09006 * 110.30788 * 263.04403 * 23 16 15 47 47 H 1.09007 * 109.46903 * 60.00568 * 26 24 14 48 48 H 1.08994 * 109.47563 * 179.97438 * 26 24 14 49 49 H 1.09002 * 109.47525 * 300.00514 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5550 0.0013 -2.4796 6 1 0.9445 0.8866 -2.3804 7 6 1.8907 -0.4679 -3.7319 8 7 1.4679 0.1629 -4.8056 9 14 2.9473 -1.9988 -3.9034 10 1 2.0744 -3.1989 -3.9603 11 1 3.7487 -1.9100 -5.1504 12 1 3.8586 -2.1046 -2.7357 13 6 2.0400 -0.7212 1.2493 14 7 3.4986 -0.5721 1.3396 15 6 4.1893 -1.8006 0.8702 16 6 5.6169 -1.2992 0.5367 17 1 6.2211 -1.2264 1.4409 18 7 6.2606 -2.1800 -0.4470 19 6 7.6023 -1.6767 -0.8107 20 6 8.4459 -2.9501 -1.0686 21 6 7.8984 -3.9138 0.0168 22 6 6.4002 -3.5494 0.0816 23 6 5.3593 0.1001 -0.0679 24 6 3.9753 0.5187 0.4619 25 1 3.2828 0.6567 -0.3685 26 6 4.0943 1.8172 1.2621 27 1 -0.3633 0.4329 0.9321 28 1 -0.3633 0.5908 -0.8409 29 1 -0.3633 -1.0236 -0.0911 30 1 3.1298 -0.7346 -1.2416 31 1 1.6642 -1.7444 -1.2569 32 1 1.7038 -0.1674 -5.6866 33 1 1.7861 -1.7794 1.1869 34 1 1.5749 -0.2874 2.1345 35 1 3.7034 -2.1985 -0.0206 36 1 4.2201 -2.5527 1.6586 37 1 8.0270 -1.1001 0.0110 38 1 7.5475 -1.0687 -1.7137 39 1 9.5071 -2.7529 -0.9162 40 1 8.2632 -3.3438 -2.0684 41 1 8.0296 -4.9521 -0.2881 42 1 8.3841 -3.7307 0.9753 43 1 5.8231 -4.2433 -0.5294 44 1 6.0535 -3.5880 1.1143 45 1 6.1214 0.8034 0.2677 46 1 5.3470 0.0455 -1.1565 47 1 4.8030 1.6772 2.0785 48 1 4.4464 2.6156 0.6090 49 1 3.1190 2.0839 1.6694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602662497.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:25 Heat of formation + Delta-G solvation = -0.815797 kcal Electronic energy + Delta-G solvation = -24334.866428 eV Core-core repulsion = 21296.141511 eV Total energy + Delta-G solvation = -3038.724918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37324 -39.46086 -36.45855 -34.51816 -32.99781 -32.49598 -30.08003 -29.86876 -29.10884 -26.82908 -25.45895 -24.81865 -22.89550 -22.16198 -21.51518 -20.90734 -19.51751 -18.84057 -17.80402 -17.15240 -16.60145 -16.28538 -15.94086 -15.48471 -15.03238 -14.85752 -14.51677 -14.35536 -14.21518 -14.08977 -13.76576 -13.63412 -13.37076 -13.13363 -12.98450 -12.82473 -12.64233 -12.51482 -12.28395 -12.12532 -12.06729 -11.96898 -11.82847 -11.73210 -11.64784 -11.59761 -11.47131 -11.27861 -11.08877 -10.89258 -10.74252 -9.22095 -9.13831 -8.27845 -6.28279 1.30107 1.35576 1.52139 2.35710 2.81956 3.08387 3.34834 3.51904 3.76574 3.78910 3.90713 4.05786 4.11628 4.16680 4.26688 4.35229 4.38805 4.42748 4.52882 4.59957 4.66692 4.67644 4.74425 4.79478 4.83043 4.91072 4.92855 4.96840 4.98549 4.99976 5.03031 5.05629 5.08433 5.12906 5.23515 5.28226 5.33759 5.35248 5.38896 5.46538 5.54534 5.64366 5.70897 5.99736 6.05647 6.22022 6.25839 6.33250 6.78996 7.35440 8.88263 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.007511 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.575799 B = 3727.116392 C = 4938.250258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 H 0.068 0.932 4 C -0.007 4.007 5 C -0.510 4.510 6 H 0.038 0.962 7 C 0.010 3.990 8 N -0.951 5.951 9 Si 0.932 3.068 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.237 1.237 13 C 0.055 3.945 14 N -0.502 5.502 15 C 0.039 3.961 16 C 0.089 3.911 17 H 0.063 0.937 18 N -0.550 5.550 19 C 0.042 3.958 20 C -0.126 4.126 21 C -0.132 4.132 22 C 0.038 3.962 23 C -0.114 4.114 24 C 0.020 3.980 25 H 0.083 0.917 26 C -0.123 4.123 27 H 0.067 0.933 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.033 0.967 31 H -0.001 1.001 32 H 0.262 0.738 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.049 0.951 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.274 -5.830 14.897 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.127 4.127 3 H 0.086 0.914 4 C -0.044 4.044 5 C -0.548 4.548 6 H 0.056 0.944 7 C -0.186 4.186 8 N -0.592 5.592 9 Si 0.756 3.244 10 H -0.203 1.203 11 H -0.218 1.218 12 H -0.160 1.160 13 C -0.074 4.074 14 N -0.225 5.225 15 C -0.089 4.089 16 C -0.020 4.020 17 H 0.081 0.919 18 N -0.275 5.275 19 C -0.086 4.086 20 C -0.164 4.164 21 C -0.171 4.171 22 C -0.090 4.090 23 C -0.152 4.152 24 C -0.088 4.088 25 H 0.101 0.899 26 C -0.180 4.180 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.018 0.982 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.068 -5.726 14.856 20.598 hybrid contribution 0.108 -0.584 -1.242 1.377 sum 13.176 -6.310 13.614 19.969 Atomic orbital electron populations 1.21601 0.95108 1.01019 1.00656 1.21583 0.96345 0.99923 0.94800 0.91355 1.19814 0.96748 0.94580 0.93227 1.21420 1.31024 1.11513 0.90832 0.94409 1.25816 0.97151 0.99891 0.95746 1.70058 1.48309 1.42433 0.98441 0.85916 0.79907 0.79979 0.78559 1.20325 1.21784 1.16043 1.22401 0.87999 1.00025 0.96944 1.65029 1.05302 1.03373 1.48811 1.23359 0.93536 0.93389 0.98614 1.22568 0.94449 0.92248 0.92737 0.91910 1.63545 1.21087 1.02563 1.40321 1.23029 0.87438 0.97797 1.00298 1.22701 0.99884 0.94467 0.99335 1.22743 0.94249 1.00549 0.99524 1.22840 0.97396 0.89642 0.99106 1.22439 0.96963 0.96070 0.99735 1.23116 0.96292 0.93148 0.96240 0.89943 1.21648 1.01846 0.94855 0.99684 0.91412 0.94758 0.93629 0.94901 0.98238 0.92891 0.92148 0.89387 0.94566 0.89426 0.92647 0.91773 0.88893 0.91563 0.89707 0.90325 0.91955 0.91909 0.90064 0.93256 0.91618 0.92491 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.85 71.98 0.64 -4.01 16 2 C -0.11 -4.13 1.85 -10.79 -0.02 -4.15 16 3 H 0.07 2.75 5.70 -2.38 -0.01 2.73 16 4 C -0.01 -0.31 1.85 29.85 0.06 -0.26 16 5 C -0.51 -29.37 9.00 25.60 0.23 -29.14 16 6 H 0.04 2.39 7.02 -2.91 -0.02 2.37 16 7 C 0.01 0.62 5.47 84.66 0.46 1.08 16 8 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 9 Si 0.93 46.74 27.47 68.60 1.88 48.62 16 10 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 12 H -0.24 -11.43 6.54 99.48 0.65 -10.78 16 13 C 0.05 1.72 5.43 86.30 0.47 2.19 16 14 N -0.50 -15.44 5.17 -858.06 -4.43 -19.88 16 15 C 0.04 1.20 4.61 86.65 0.40 1.60 16 16 C 0.09 2.50 2.32 46.12 0.11 2.61 16 17 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 18 N -0.55 -15.55 5.00 -853.34 -4.26 -19.81 16 19 C 0.04 0.99 6.09 86.77 0.53 1.51 16 20 C -0.13 -2.35 7.08 31.98 0.23 -2.12 16 21 C -0.13 -2.29 6.94 31.77 0.22 -2.07 16 22 C 0.04 0.87 6.36 86.65 0.55 1.42 16 23 C -0.11 -3.53 5.23 31.47 0.16 -3.37 16 24 C 0.02 0.66 1.65 45.06 0.07 0.73 16 25 H 0.08 3.34 2.99 -2.39 -0.01 3.33 16 26 C -0.12 -3.36 9.07 71.98 0.65 -2.71 16 27 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.03 1.45 6.85 -2.39 -0.02 1.43 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 1.56 3.41 -2.39 -0.01 1.55 16 31 H 0.00 -0.03 7.57 -2.39 -0.02 -0.05 16 32 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 33 H 0.06 1.89 7.63 -2.39 -0.02 1.87 16 34 H 0.09 2.43 8.13 -2.39 -0.02 2.41 16 35 H 0.04 1.33 6.25 -2.39 -0.01 1.32 16 36 H 0.09 2.31 7.63 -2.38 -0.02 2.29 16 37 H 0.06 1.17 7.78 -2.39 -0.02 1.15 16 38 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.06 1.33 6.82 -2.38 -0.02 1.32 16 45 H 0.08 2.16 7.69 -2.39 -0.02 2.14 16 46 H 0.05 1.83 7.98 -2.38 -0.02 1.81 16 47 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 48 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.05 1.43 8.01 -2.39 -0.02 1.41 16 Total: -1.00 -66.32 353.43 -0.92 -67.24 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.83 Total: 21.13 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 4.76 Total: -36.67 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -8.40 Total: -100.32 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.88 Total: 48.62 kcal Total: -66.32 -0.92 -67.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602662497.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.424 kcal (2) G-P(sol) polarization free energy of solvation -66.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds