Wall clock time and date at job start Fri Apr 10 2020 17:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46848 * 2 1 4 4 C 1.53001 * 109.46802 * 240.00077 * 2 1 3 5 5 C 1.50694 * 109.47372 * 65.00037 * 4 2 1 6 6 H 1.08007 * 120.00162 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00275 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00276 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47450 * 89.99375 * 9 7 5 11 11 H 1.48495 * 109.47333 * 209.99734 * 9 7 5 12 12 H 1.48509 * 109.47032 * 329.99757 * 9 7 5 13 13 C 1.52999 * 109.46990 * 120.00059 * 2 1 3 14 14 N 1.46899 * 109.47219 * 297.73116 * 13 2 1 15 15 C 1.47687 * 111.00097 * 292.01048 * 14 13 2 16 16 C 1.50774 * 108.09658 * 151.99056 * 15 14 13 17 17 N 1.47746 * 111.91811 * 94.61174 * 16 15 14 18 18 C 1.46896 * 111.00255 * 192.81067 * 17 16 15 19 19 C 1.52999 * 117.49614 * 265.76631 * 18 17 16 20 20 C 1.52999 * 117.49789 * 197.14450 * 18 17 16 21 21 C 1.48064 * 113.78589 * 318.87620 * 17 16 15 22 22 C 1.50747 * 112.94062 * 318.28276 * 21 17 16 23 23 H 1.09001 * 109.64325 * 332.75966 * 22 21 17 24 24 C 1.53001 * 109.56239 * 212.48926 * 22 21 17 25 25 C 1.40088 * 111.00070 * 163.36916 * 14 13 2 26 26 H 1.09008 * 109.47009 * 299.99756 * 1 2 3 27 27 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47419 * 59.99597 * 1 2 3 29 29 H 1.09001 * 109.46533 * 184.99903 * 4 2 1 30 30 H 1.09003 * 109.47176 * 304.99643 * 4 2 1 31 31 H 0.97003 * 120.00095 * 180.02562 * 8 7 5 32 32 H 1.08993 * 109.47223 * 57.73369 * 13 2 1 33 33 H 1.09007 * 109.46998 * 177.73570 * 13 2 1 34 34 H 1.09003 * 109.73756 * 271.64041 * 15 14 13 35 35 H 1.08997 * 109.73775 * 32.33620 * 15 14 13 36 36 H 1.08999 * 108.99228 * 333.98218 * 16 15 14 37 37 H 1.09000 * 108.92862 * 215.19241 * 16 15 14 38 38 H 1.08996 * 115.54993 * 51.47144 * 18 17 16 39 39 H 1.08994 * 117.49994 * 0.02562 * 19 18 17 40 40 H 1.09007 * 117.49569 * 145.02027 * 19 18 17 41 41 H 1.09002 * 117.49902 * 214.97620 * 20 18 17 42 42 H 1.09000 * 117.49978 * 359.97438 * 20 18 17 43 43 H 1.09000 * 108.79176 * 197.39068 * 21 17 16 44 44 H 1.09004 * 108.70273 * 79.10950 * 21 17 16 45 45 H 1.08998 * 109.47076 * 300.53631 * 24 22 21 46 46 H 1.08997 * 109.46852 * 60.53584 * 24 22 21 47 47 H 1.08994 * 109.46819 * 180.53811 * 24 22 21 48 48 H 1.08994 * 109.07105 * 308.67357 * 25 14 13 49 49 H 1.08997 * 109.07042 * 67.62748 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9922 -0.4023 -3.7283 8 7 2.6754 -1.5193 -3.8512 9 14 1.4987 0.5628 -5.2496 10 1 2.5647 1.5416 -5.5824 11 1 1.3108 -0.3709 -6.3889 12 1 0.2280 1.2852 -4.9869 13 6 2.0400 -0.7213 1.2492 14 7 1.5956 0.0021 2.4480 15 6 2.2643 1.3148 2.5524 16 6 1.3486 2.2486 3.3026 17 7 1.6608 2.2854 4.7463 18 6 0.5887 2.9488 5.5000 19 6 0.7451 4.4442 5.7829 20 6 0.9136 3.4296 6.9157 21 6 1.9726 0.9581 5.3238 22 6 1.0592 -0.1307 4.8212 23 1 0.0981 0.2988 4.5384 24 6 0.8505 -1.1729 5.9217 25 6 1.7084 -0.8015 3.5900 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 3.1263 -0.7994 -1.2056 30 1 1.6054 -1.7198 -1.2952 31 1 2.9226 -1.8423 -4.7318 32 1 1.6439 -1.7365 1.2698 33 1 3.1293 -0.7566 1.2292 34 1 3.2042 1.2071 3.0938 35 1 2.4566 1.7103 1.5551 36 1 0.3186 1.9172 3.1708 37 1 1.4533 3.2526 2.8914 38 1 -0.4178 2.5739 5.3144 39 1 1.6433 4.9358 5.4094 40 1 -0.1588 5.0536 5.7834 41 1 0.1207 3.3715 7.6614 42 1 1.9228 3.2534 7.2879 43 1 1.8841 1.0177 6.4086 44 1 3.0005 0.6991 5.0697 45 1 1.8127 -1.5987 6.2061 46 1 0.3925 -0.6982 6.7895 47 1 0.1976 -1.9642 5.5536 48 1 1.2165 -1.7561 3.4037 49 1 2.7636 -0.9802 3.7968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602671075.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:18 Heat of formation + Delta-G solvation = 22.868679 kcal Electronic energy + Delta-G solvation = -23169.095883 eV Core-core repulsion = 20131.398001 eV Total energy + Delta-G solvation = -3037.697882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.00901 -37.66088 -35.68351 -33.69164 -33.42655 -31.85874 -28.70101 -27.09249 -26.25324 -26.04253 -24.12091 -22.55270 -22.30513 -21.46874 -20.54046 -19.51529 -18.58907 -16.79847 -16.35020 -16.05557 -15.35812 -15.13722 -15.05023 -14.37873 -14.18709 -13.58160 -13.36701 -13.19972 -12.80929 -12.73952 -12.28719 -12.25652 -12.11470 -11.77408 -11.65559 -11.60421 -11.36072 -11.15678 -11.02474 -10.86324 -10.84350 -10.68556 -10.54921 -10.46958 -10.25425 -10.20966 -10.10059 -9.56532 -9.08994 -8.93036 -8.30674 -8.27012 -7.88061 -5.95693 -3.96601 3.34286 3.40630 3.44009 3.61124 3.66726 4.14466 4.50123 4.68104 4.76984 4.78566 4.85366 5.01013 5.10813 5.22732 5.39515 5.40742 5.41875 5.44611 5.47310 5.56220 5.58135 5.66824 5.68218 5.73587 5.79642 5.87014 5.94711 5.97874 6.01442 6.04243 6.13143 6.18594 6.25448 6.32469 6.43483 6.59050 6.74802 7.00411 7.05825 7.10268 7.20455 7.24737 7.47906 7.71602 7.72096 7.88659 8.04811 8.49151 9.09896 9.66733 11.15889 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.025412 B = 0.003570 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.560267 B = 7840.450174 C = 8567.522529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.080 4.080 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.067 3.933 14 N -0.555 5.555 15 C 0.058 3.942 16 C 0.067 3.933 17 N -0.521 5.521 18 C 0.010 3.990 19 C -0.165 4.165 20 C -0.172 4.172 21 C 0.064 3.936 22 C -0.120 4.120 23 H 0.077 0.923 24 C -0.139 4.139 25 C 0.082 3.918 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.012 0.988 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.068 0.932 49 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 5.841 21.773 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.059 4.059 14 N -0.278 5.278 15 C -0.069 4.069 16 C -0.060 4.060 17 N -0.246 5.246 18 C -0.099 4.099 19 C -0.203 4.203 20 C -0.209 4.209 21 C -0.063 4.063 22 C -0.140 4.140 23 H 0.096 0.904 24 C -0.197 4.197 25 C -0.048 4.048 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -3.152 6.077 21.636 22.693 hybrid contribution -0.091 -0.294 -0.957 1.005 sum -3.243 5.782 20.680 21.716 Atomic orbital electron populations 1.21549 0.95829 1.00343 1.00003 1.21232 0.95919 0.98976 0.93757 0.92612 1.19120 0.95873 0.95538 0.90510 1.21235 1.34490 1.08236 0.90976 0.92585 1.25018 0.95385 0.95076 0.99081 1.69967 1.39198 1.21235 1.23337 0.86639 0.78931 0.79818 0.82891 1.20764 1.21342 1.19885 1.22260 0.97176 0.97240 0.89255 1.59023 1.60625 1.04707 1.03485 1.21916 0.94984 0.89119 1.00842 1.21842 0.99164 0.99425 0.85532 1.61992 1.39917 1.19782 1.02881 1.22318 0.93998 0.96452 0.97107 1.23013 1.03301 0.91667 1.02280 1.22980 1.02823 1.04106 0.91017 1.22008 0.98963 0.86562 0.98753 1.21618 1.00389 0.96698 0.95322 0.90449 1.21747 1.01563 0.98671 0.97759 1.21036 0.97666 0.96165 0.89939 0.94041 0.94397 0.92903 0.96994 0.96666 0.93133 0.91523 0.95264 0.93765 0.89121 0.93005 0.90851 0.89975 0.88266 0.89001 0.89020 0.88500 0.91354 0.91353 0.92708 0.92768 0.92520 0.91330 0.96656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.87 37.16 0.33 -2.01 16 2 C -0.08 -1.63 2.28 -90.62 -0.21 -1.84 16 3 H 0.06 1.15 6.29 -51.93 -0.33 0.82 16 4 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.07 1.17 4.35 -3.83 -0.02 1.15 16 14 N -0.55 -8.16 3.29 -239.70 -0.79 -8.95 16 15 C 0.06 0.82 5.17 -4.51 -0.02 0.79 16 16 C 0.07 0.85 5.10 -4.47 -0.02 0.83 16 17 N -0.52 -5.96 4.85 -227.71 -1.10 -7.06 16 18 C 0.01 0.10 4.83 -67.72 -0.33 -0.22 16 19 C -0.16 -1.46 10.46 -26.73 -0.28 -1.74 16 20 C -0.17 -1.44 9.73 -26.73 -0.26 -1.70 16 21 C 0.06 0.69 4.67 -4.31 -0.02 0.67 16 22 C -0.12 -1.31 2.43 -90.95 -0.22 -1.53 16 23 H 0.08 0.96 7.10 -51.93 -0.37 0.59 16 24 C -0.14 -1.25 8.91 37.16 0.33 -0.92 16 25 C 0.08 1.05 4.32 -6.55 -0.03 1.03 16 26 H 0.04 0.73 7.67 -51.92 -0.40 0.33 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 32 H 0.07 1.17 7.72 -51.93 -0.40 0.77 16 33 H 0.03 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.04 0.62 6.77 -51.93 -0.35 0.27 16 35 H 0.09 1.38 5.96 -51.93 -0.31 1.07 16 36 H 0.05 0.71 7.07 -51.93 -0.37 0.35 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.67 6.85 -51.93 -0.36 0.32 16 44 H 0.07 0.80 6.52 -51.93 -0.34 0.46 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.44 8.10 -51.93 -0.42 0.02 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.90 7.66 -51.93 -0.40 0.50 16 49 H 0.02 0.20 7.60 -51.93 -0.39 -0.19 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -28.98 367.01 -11.27 -40.25 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -9.37 Total: -2.10 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -1.26 Total: -18.06 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -1.16 Total: -42.39 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.98 -11.27 -40.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671075.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.117 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds