Wall clock time and date at job start Fri Apr 10 2020 17:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46848 * 2 1 4 4 C 1.53001 * 109.46802 * 240.00077 * 2 1 3 5 5 C 1.50694 * 109.47372 * 65.00037 * 4 2 1 6 6 H 1.08007 * 120.00162 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00275 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00276 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47450 * 89.99375 * 9 7 5 11 11 H 1.48495 * 109.47333 * 209.99734 * 9 7 5 12 12 H 1.48509 * 109.47032 * 329.99757 * 9 7 5 13 13 C 1.52999 * 109.46990 * 120.00059 * 2 1 3 14 14 N 1.46899 * 109.47219 * 297.73116 * 13 2 1 15 15 C 1.47687 * 111.00097 * 292.01048 * 14 13 2 16 16 C 1.50774 * 108.09658 * 151.99056 * 15 14 13 17 17 N 1.47746 * 111.91811 * 94.61174 * 16 15 14 18 18 C 1.46896 * 111.00255 * 192.81067 * 17 16 15 19 19 C 1.52999 * 117.49614 * 265.76631 * 18 17 16 20 20 C 1.52999 * 117.49789 * 197.14450 * 18 17 16 21 21 C 1.48064 * 113.78589 * 318.87620 * 17 16 15 22 22 C 1.50747 * 112.94062 * 318.28276 * 21 17 16 23 23 H 1.09001 * 109.64325 * 332.75966 * 22 21 17 24 24 C 1.53001 * 109.56239 * 212.48926 * 22 21 17 25 25 C 1.40088 * 111.00070 * 163.36916 * 14 13 2 26 26 H 1.09008 * 109.47009 * 299.99756 * 1 2 3 27 27 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47419 * 59.99597 * 1 2 3 29 29 H 1.09001 * 109.46533 * 184.99903 * 4 2 1 30 30 H 1.09003 * 109.47176 * 304.99643 * 4 2 1 31 31 H 0.97003 * 120.00095 * 180.02562 * 8 7 5 32 32 H 1.08993 * 109.47223 * 57.73369 * 13 2 1 33 33 H 1.09007 * 109.46998 * 177.73570 * 13 2 1 34 34 H 1.09003 * 109.73756 * 271.64041 * 15 14 13 35 35 H 1.08997 * 109.73775 * 32.33620 * 15 14 13 36 36 H 1.08999 * 108.99228 * 333.98218 * 16 15 14 37 37 H 1.09000 * 108.92862 * 215.19241 * 16 15 14 38 38 H 1.08996 * 115.54993 * 51.47144 * 18 17 16 39 39 H 1.08994 * 117.49994 * 0.02562 * 19 18 17 40 40 H 1.09007 * 117.49569 * 145.02027 * 19 18 17 41 41 H 1.09002 * 117.49902 * 214.97620 * 20 18 17 42 42 H 1.09000 * 117.49978 * 359.97438 * 20 18 17 43 43 H 1.09000 * 108.79176 * 197.39068 * 21 17 16 44 44 H 1.09004 * 108.70273 * 79.10950 * 21 17 16 45 45 H 1.08998 * 109.47076 * 300.53631 * 24 22 21 46 46 H 1.08997 * 109.46852 * 60.53584 * 24 22 21 47 47 H 1.08994 * 109.46819 * 180.53811 * 24 22 21 48 48 H 1.08994 * 109.07105 * 308.67357 * 25 14 13 49 49 H 1.08997 * 109.07042 * 67.62748 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9922 -0.4023 -3.7283 8 7 2.6754 -1.5193 -3.8512 9 14 1.4987 0.5628 -5.2496 10 1 2.5647 1.5416 -5.5824 11 1 1.3108 -0.3709 -6.3889 12 1 0.2280 1.2852 -4.9869 13 6 2.0400 -0.7213 1.2492 14 7 1.5956 0.0021 2.4480 15 6 2.2643 1.3148 2.5524 16 6 1.3486 2.2486 3.3026 17 7 1.6608 2.2854 4.7463 18 6 0.5887 2.9488 5.5000 19 6 0.7451 4.4442 5.7829 20 6 0.9136 3.4296 6.9157 21 6 1.9726 0.9581 5.3238 22 6 1.0592 -0.1307 4.8212 23 1 0.0981 0.2988 4.5384 24 6 0.8505 -1.1729 5.9217 25 6 1.7084 -0.8015 3.5900 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 3.1263 -0.7994 -1.2056 30 1 1.6054 -1.7198 -1.2952 31 1 2.9226 -1.8423 -4.7318 32 1 1.6439 -1.7365 1.2698 33 1 3.1293 -0.7566 1.2292 34 1 3.2042 1.2071 3.0938 35 1 2.4566 1.7103 1.5551 36 1 0.3186 1.9172 3.1708 37 1 1.4533 3.2526 2.8914 38 1 -0.4178 2.5739 5.3144 39 1 1.6433 4.9358 5.4094 40 1 -0.1588 5.0536 5.7834 41 1 0.1207 3.3715 7.6614 42 1 1.9228 3.2534 7.2879 43 1 1.8841 1.0177 6.4086 44 1 3.0005 0.6991 5.0697 45 1 1.8127 -1.5987 6.2061 46 1 0.3925 -0.6982 6.7895 47 1 0.1976 -1.9642 5.5536 48 1 1.2165 -1.7561 3.4037 49 1 2.7636 -0.9802 3.7968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602671075.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:16 Heat of formation + Delta-G solvation = 6.916996 kcal Electronic energy + Delta-G solvation = -23169.787600 eV Core-core repulsion = 20131.398001 eV Total energy + Delta-G solvation = -3038.389599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.05400 -38.68605 -37.00270 -35.23230 -34.34612 -33.74967 -29.76041 -28.96582 -27.64566 -26.95919 -25.66009 -24.06169 -23.06550 -22.36987 -21.70235 -20.67907 -19.96358 -18.52443 -17.62261 -17.08362 -16.71924 -16.26945 -16.22087 -16.01503 -15.53425 -14.66654 -14.49177 -14.38135 -14.16282 -13.99535 -13.81392 -13.27966 -13.23856 -13.15757 -13.06285 -12.77756 -12.58680 -12.46025 -12.31479 -12.30285 -12.19476 -12.11747 -11.94346 -11.72619 -11.52481 -11.36953 -11.25766 -11.02590 -10.91491 -10.79523 -10.52324 -9.16392 -9.12635 -8.16843 -6.25774 1.40464 1.41342 1.52403 2.42409 2.78120 2.89024 2.99131 3.16702 3.72687 3.89687 3.99720 4.07219 4.09177 4.25738 4.26342 4.30446 4.34444 4.38512 4.47282 4.54122 4.58162 4.65429 4.71369 4.79082 4.83846 4.84265 4.88567 4.92461 4.95743 5.01413 5.10082 5.10917 5.14029 5.21665 5.27741 5.30235 5.35926 5.43192 5.48583 5.50944 5.57141 5.82148 5.89960 6.04754 6.16238 6.25210 6.32386 6.55384 6.90297 7.42483 8.95289 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.025412 B = 0.003570 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.560267 B = 7840.450174 C = 8567.522529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.070 4.070 3 H 0.055 0.945 4 C 0.034 3.966 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.079 3.921 14 N -0.552 5.552 15 C 0.062 3.938 16 C 0.077 3.923 17 N -0.526 5.526 18 C -0.006 4.006 19 C -0.164 4.164 20 C -0.157 4.157 21 C 0.067 3.933 22 C -0.108 4.108 23 H 0.065 0.935 24 C -0.134 4.134 25 C 0.078 3.922 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.036 0.964 29 H -0.016 1.016 30 H -0.011 1.011 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.020 0.980 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.067 0.933 49 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 7.085 23.302 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.048 4.048 14 N -0.275 5.275 15 C -0.065 4.065 16 C -0.050 4.050 17 N -0.250 5.250 18 C -0.115 4.115 19 C -0.201 4.201 20 C -0.194 4.194 21 C -0.060 4.060 22 C -0.128 4.128 23 H 0.083 0.917 24 C -0.192 4.192 25 C -0.052 4.052 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.003 0.997 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.086 0.914 49 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -4.134 7.334 23.190 24.671 hybrid contribution 0.243 -0.691 -1.390 1.572 sum -3.890 6.642 21.800 23.119 Atomic orbital electron populations 1.21421 0.94766 1.00147 1.00199 1.21026 0.96602 0.98412 0.92825 0.92715 1.19000 0.93992 0.94653 0.92755 1.21629 1.34316 1.08517 0.92044 0.92129 1.25942 0.95302 0.96073 1.02625 1.70103 1.40397 1.22949 1.24245 0.85519 0.79035 0.78392 0.78563 1.19905 1.20966 1.18724 1.21978 0.96467 0.96980 0.89402 1.59012 1.60443 1.04894 1.03197 1.21875 0.95387 0.88908 1.00296 1.21665 0.97962 0.98875 0.86508 1.61975 1.40619 1.20229 1.02187 1.22355 0.93416 0.97225 0.98454 1.23060 1.03568 0.91148 1.02367 1.23037 1.03321 1.02619 0.90462 1.21998 0.98282 0.86217 0.99517 1.21506 0.99383 0.97095 0.94861 0.91657 1.21713 1.02086 0.98088 0.97352 1.21138 0.97893 0.96124 0.90000 0.91853 0.94761 0.94506 0.99722 0.99243 0.92973 0.91701 0.96150 0.93791 0.90569 0.94011 0.90678 0.90296 0.89001 0.87766 0.87326 0.88598 0.89888 0.92286 0.92063 0.91419 0.92529 0.91442 0.96739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.19 8.87 71.98 0.64 -3.55 16 2 C -0.07 -2.89 2.28 -10.79 -0.02 -2.91 16 3 H 0.05 2.28 6.29 -2.39 -0.02 2.27 16 4 C 0.03 1.78 4.45 29.85 0.13 1.92 16 5 C -0.53 -30.05 8.41 25.60 0.22 -29.84 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -57.73 13.29 21.45 0.28 -57.44 16 9 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.08 2.78 4.35 86.30 0.38 3.15 16 14 N -0.55 -16.00 3.29 -912.28 -3.00 -19.01 16 15 C 0.06 1.72 5.17 85.43 0.44 2.16 16 16 C 0.08 1.89 5.10 85.42 0.44 2.32 16 17 N -0.53 -11.25 4.85 -874.33 -4.24 -15.49 16 18 C -0.01 -0.10 4.83 44.92 0.22 0.11 16 19 C -0.16 -2.57 10.46 30.59 0.32 -2.25 16 20 C -0.16 -2.22 9.73 30.59 0.30 -1.92 16 21 C 0.07 1.32 4.67 85.35 0.40 1.72 16 22 C -0.11 -2.18 2.43 -11.01 -0.03 -2.21 16 23 H 0.07 1.52 7.10 -2.39 -0.02 1.50 16 24 C -0.13 -2.10 8.91 71.98 0.64 -1.46 16 25 C 0.08 1.94 4.32 88.05 0.38 2.32 16 26 H 0.06 2.17 7.67 -2.38 -0.02 2.15 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.04 1.52 6.95 -2.39 -0.02 1.50 16 29 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 30 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.06 2.30 7.72 -2.39 -0.02 2.28 16 33 H 0.02 0.75 8.10 -2.38 -0.02 0.73 16 34 H 0.04 1.22 6.77 -2.39 -0.02 1.20 16 35 H 0.08 2.33 5.96 -2.39 -0.01 2.31 16 36 H 0.04 1.11 7.07 -2.39 -0.02 1.09 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.51 8.13 -2.39 -0.02 1.49 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.08 1.41 6.85 -2.39 -0.02 1.39 16 44 H 0.06 1.29 6.52 -2.39 -0.02 1.27 16 45 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 1.70 7.66 -2.39 -0.02 1.68 16 49 H 0.01 0.37 7.60 -2.39 -0.02 0.35 16 Total: -1.00 -62.45 367.01 0.85 -61.60 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.88 Total: 13.57 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 4.91 Total: -30.10 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -6.96 Total: -91.94 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -62.45 0.85 -61.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671075.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.516 kcal (2) G-P(sol) polarization free energy of solvation -62.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds