Wall clock time and date at job start Fri Apr 10 2020 17:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46337 * 2 1 4 4 C 1.52997 * 109.46880 * 119.99611 * 2 1 3 5 5 C 1.50700 * 109.47248 * 295.00046 * 4 2 1 6 6 H 1.07997 * 120.00464 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00043 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99753 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00416 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47215 * 270.00315 * 9 7 5 11 11 H 1.48504 * 109.47049 * 29.99975 * 9 7 5 12 12 H 1.48498 * 109.47565 * 149.99723 * 9 7 5 13 13 C 1.52998 * 109.47292 * 239.99938 * 2 1 3 14 14 N 1.46905 * 109.47210 * 63.98509 * 13 2 1 15 15 C 1.47958 * 110.99795 * 175.71750 * 14 13 2 16 16 C 1.54151 * 107.03321 * 214.27915 * 15 14 13 17 17 C 1.53905 * 104.97712 * 1.63209 * 16 15 14 18 18 C 1.48655 * 110.99925 * 58.20637 * 14 13 2 19 19 C 1.52314 * 110.58090 * 139.56491 * 17 16 15 20 20 C 1.53266 * 109.22705 * 179.05829 * 19 17 16 21 21 C 1.53038 * 109.16980 * 303.51206 * 20 19 17 22 22 N 1.46852 * 109.66696 * 59.75547 * 21 20 19 23 23 C 1.46899 * 111.00001 * 173.67192 * 22 21 20 24 24 C 1.46989 * 111.11549 * 297.71356 * 22 21 20 25 25 H 1.09009 * 109.47116 * 185.02392 * 1 2 3 26 26 H 1.08996 * 109.47758 * 305.01886 * 1 2 3 27 27 H 1.08997 * 109.47307 * 65.02749 * 1 2 3 28 28 H 1.09007 * 109.46705 * 175.00227 * 4 2 1 29 29 H 1.08996 * 109.47443 * 55.00677 * 4 2 1 30 30 H 0.97003 * 120.00258 * 0.02562 * 8 7 5 31 31 H 1.08997 * 109.46921 * 183.98261 * 13 2 1 32 32 H 1.09005 * 109.46864 * 303.98781 * 13 2 1 33 33 H 1.08994 * 109.92109 * 333.62425 * 15 14 13 34 34 H 1.08996 * 109.92073 * 94.93812 * 15 14 13 35 35 H 1.09001 * 110.33714 * 120.50731 * 16 15 14 36 36 H 1.09001 * 110.33999 * 242.64370 * 16 15 14 37 37 H 1.08997 * 110.67655 * 277.48009 * 18 14 13 38 38 H 1.09005 * 110.67189 * 40.63380 * 18 14 13 39 39 H 1.09002 * 109.50850 * 298.98728 * 19 17 16 40 40 H 1.09002 * 109.51264 * 59.12758 * 19 17 16 41 41 H 1.08998 * 109.51761 * 183.60031 * 20 19 17 42 42 H 1.08998 * 109.57034 * 63.44697 * 20 19 17 43 43 H 1.09001 * 109.44346 * 299.69333 * 21 20 19 44 44 H 1.09007 * 109.40474 * 179.79807 * 21 20 19 45 45 H 1.09006 * 109.46961 * 184.10855 * 23 22 21 46 46 H 1.08997 * 109.47431 * 304.10563 * 23 22 21 47 47 H 1.08995 * 109.47339 * 64.10913 * 23 22 21 48 48 H 1.08999 * 109.44727 * 300.42764 * 24 22 21 49 49 H 1.08999 * 109.44206 * 180.52325 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9931 -0.4015 3.7283 8 7 2.6772 -1.5181 3.8511 9 14 1.4984 0.5628 5.2496 10 1 2.5630 1.5432 5.5822 11 1 0.2266 1.2832 4.9872 12 1 1.3121 -0.3712 6.3890 13 6 2.0400 -0.7212 -1.2492 14 7 1.6306 0.0246 -2.4468 15 6 2.1930 -0.5876 -3.6707 16 6 2.4967 0.5618 -4.6520 17 6 2.1129 1.8445 -3.8930 18 6 2.1509 1.4166 -2.4112 19 6 3.1330 2.9455 -4.1521 20 6 2.7091 4.2131 -3.4021 21 6 1.2959 4.6063 -3.8385 22 7 0.3626 3.5143 -3.5333 23 6 -1.0244 3.9169 -3.8014 24 6 0.7111 2.2961 -4.2784 25 1 -0.3634 -1.0238 0.0900 26 1 -0.3634 0.5897 0.8416 27 1 -0.3634 0.4338 -0.9315 28 1 3.1263 -0.7993 1.2056 29 1 1.6054 -1.7197 1.2952 30 1 2.9344 -2.0187 3.0611 31 1 3.1277 -0.7834 -1.2142 32 1 1.6195 -1.7262 -1.2856 33 1 3.1115 -1.1228 -3.4299 34 1 1.4668 -1.2703 -4.1119 35 1 3.5569 0.5740 -4.9047 36 1 1.8940 0.4588 -5.5544 37 1 1.5032 2.0544 -1.8097 38 1 3.1724 1.4360 -2.0312 39 1 4.1130 2.6241 -3.7991 40 1 3.1806 3.1536 -5.2210 41 1 3.4008 5.0226 -3.6351 42 1 2.7192 4.0229 -2.3289 43 1 1.2883 4.8008 -4.9109 44 1 0.9891 5.5057 -3.3045 45 1 -1.7000 3.1167 -3.4986 46 1 -1.2560 4.8206 -3.2378 47 1 -1.1467 4.1118 -4.8668 48 1 0.6777 2.5029 -5.3480 49 1 -0.0027 1.5078 -4.0392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602677218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:26 Heat of formation + Delta-G solvation = -17.196044 kcal Electronic energy + Delta-G solvation = -23640.600018 eV Core-core repulsion = 20601.164799 eV Total energy + Delta-G solvation = -3039.435218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36844 -37.61794 -35.38602 -33.48920 -32.42027 -30.97650 -29.06890 -26.95227 -26.43105 -26.22773 -24.62690 -23.04915 -22.73937 -21.55303 -20.47128 -19.18950 -18.34379 -16.69648 -16.01694 -15.65201 -15.25546 -14.93807 -14.60633 -14.28047 -13.92265 -13.65242 -13.51841 -13.34846 -12.98227 -12.77295 -12.57906 -12.37239 -12.17990 -11.93724 -11.79002 -11.52076 -11.31196 -11.26618 -11.08655 -10.94376 -10.87100 -10.57445 -10.39978 -10.32552 -10.24487 -10.09062 -9.99514 -9.64628 -9.33355 -8.39324 -8.35364 -8.22734 -8.02412 -6.25922 -3.93186 3.48895 3.52929 3.68556 3.82254 4.27516 4.58445 4.61197 4.63570 4.69610 4.92340 4.98221 5.18003 5.20330 5.29834 5.31444 5.36446 5.44963 5.50575 5.54829 5.60493 5.69462 5.74508 5.79689 5.80699 5.82490 5.86103 5.89670 5.93877 5.94959 6.11755 6.16313 6.23336 6.30690 6.40711 6.49453 6.54126 6.70423 7.00572 7.01947 7.03449 7.12666 7.20066 7.31297 7.44969 7.52532 7.68847 8.35389 8.58448 9.00016 9.78107 11.14619 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.004321 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.288877 B = 6479.125058 C = 7089.108492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.074 4.074 3 H 0.057 0.943 4 C 0.014 3.986 5 C -0.590 4.590 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.053 3.947 14 N -0.511 5.511 15 C 0.034 3.966 16 C -0.121 4.121 17 C -0.060 4.060 18 C 0.057 3.943 19 C -0.107 4.107 20 C -0.119 4.119 21 C 0.056 3.944 22 N -0.537 5.537 23 C 0.028 3.972 24 C 0.080 3.920 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.001 0.999 29 H 0.006 0.994 30 H 0.268 0.732 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.027 0.973 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.019 0.981 48 H 0.025 0.975 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 9.562 -20.437 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.092 4.092 3 H 0.076 0.924 4 C -0.024 4.024 5 C -0.628 4.628 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.555 5.555 9 Si 0.898 3.102 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.075 4.075 14 N -0.235 5.235 15 C -0.095 4.095 16 C -0.159 4.159 17 C -0.061 4.061 18 C -0.071 4.071 19 C -0.145 4.145 20 C -0.157 4.157 21 C -0.072 4.072 22 N -0.261 5.261 23 C -0.120 4.120 24 C -0.048 4.048 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.019 0.981 29 H 0.024 0.976 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.038 0.962 48 H 0.043 0.957 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.512 9.446 -18.283 20.731 hybrid contribution 0.839 0.053 -2.520 2.656 sum -1.673 9.499 -20.802 22.930 Atomic orbital electron populations 1.21548 0.95501 1.00499 1.00169 1.21069 0.96148 0.98935 0.93086 0.92447 1.19264 0.94987 0.95582 0.92532 1.22059 1.38352 1.10186 0.92222 0.93197 1.25806 0.94814 0.97156 1.01339 1.70748 1.36340 1.14986 1.33465 0.83544 0.75975 0.75243 0.75436 1.21612 1.21486 1.21130 1.22466 0.97055 0.97744 0.90242 1.64831 1.54956 1.02110 1.01615 1.22883 0.98165 0.96669 0.91752 1.22400 1.01072 0.94148 0.98293 1.20965 0.94574 0.94115 0.96401 1.23154 0.98566 0.90513 0.94858 1.21509 0.98216 0.94941 0.99802 1.21628 0.95198 0.97154 1.01691 1.22079 0.93008 0.93992 0.98096 1.61872 1.02286 1.04376 1.57597 1.22322 0.89570 1.01626 0.98487 1.21877 0.96534 0.92427 0.93938 0.94393 0.93007 0.93489 0.98072 0.97595 0.92205 0.95612 0.91478 0.94182 0.90887 0.91512 0.91358 0.88324 0.94447 0.91704 0.92387 0.91681 0.90549 0.95440 0.90943 0.91110 0.91491 0.96207 0.95722 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.86 37.16 0.33 -2.14 16 2 C -0.07 -1.58 2.14 -90.62 -0.19 -1.77 16 3 H 0.06 1.27 6.70 -51.93 -0.35 0.93 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -17.10 8.47 -34.44 -0.29 -17.40 16 6 H 0.05 1.44 7.06 -52.49 -0.37 1.07 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.84 13.65 55.43 0.76 -28.08 16 9 Si 1.07 26.05 29.90 -169.99 -5.08 20.97 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.05 0.96 4.24 -3.82 -0.02 0.95 16 14 N -0.51 -7.92 4.58 -230.63 -1.06 -8.97 16 15 C 0.03 0.43 6.71 -2.64 -0.02 0.41 16 16 C -0.12 -1.29 6.07 -25.66 -0.16 -1.45 16 17 C -0.06 -0.69 0.58 -154.11 -0.09 -0.78 16 18 C 0.06 0.83 3.33 -2.18 -0.01 0.83 16 19 C -0.11 -1.09 4.64 -26.94 -0.12 -1.22 16 20 C -0.12 -1.21 5.91 -26.57 -0.16 -1.36 16 21 C 0.06 0.57 5.44 -3.83 -0.02 0.55 16 22 N -0.54 -6.21 4.28 -243.35 -1.04 -7.25 16 23 C 0.03 0.28 9.60 60.06 0.58 0.85 16 24 C 0.08 0.92 4.05 -4.17 -0.02 0.90 16 25 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.05 1.14 7.10 -51.93 -0.37 0.77 16 27 H 0.05 0.88 7.58 -51.93 -0.39 0.49 16 28 H 0.00 0.03 8.01 -51.93 -0.42 -0.39 16 29 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 30 H 0.27 8.39 7.22 -40.82 -0.29 8.09 16 31 H 0.03 0.48 7.97 -51.93 -0.41 0.07 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.04 0.52 7.67 -51.93 -0.40 0.13 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.66 7.82 -51.93 -0.41 0.26 16 36 H 0.07 0.65 7.84 -51.93 -0.41 0.25 16 37 H 0.10 1.65 6.92 -51.93 -0.36 1.29 16 38 H 0.04 0.59 7.82 -51.93 -0.41 0.18 16 39 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.91 7.55 -51.93 -0.39 0.52 16 43 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.07 0.69 8.08 -51.92 -0.42 0.27 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 47 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -30.79 363.83 -11.00 -41.78 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -9.67 Total: -2.81 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -0.39 Total: -21.12 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -1.34 Total: -44.31 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.08 Total: 20.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.79 -11.00 -41.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602677218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.586 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds