Wall clock time and date at job start Fri Apr 10 2020 17:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46337 * 2 1 4 4 C 1.52997 * 109.46880 * 119.99611 * 2 1 3 5 5 C 1.50700 * 109.47248 * 295.00046 * 4 2 1 6 6 H 1.07997 * 120.00464 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00043 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99753 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00416 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47215 * 270.00315 * 9 7 5 11 11 H 1.48504 * 109.47049 * 29.99975 * 9 7 5 12 12 H 1.48498 * 109.47565 * 149.99723 * 9 7 5 13 13 C 1.52998 * 109.47292 * 239.99938 * 2 1 3 14 14 N 1.46905 * 109.47210 * 63.98509 * 13 2 1 15 15 C 1.47958 * 110.99795 * 175.71750 * 14 13 2 16 16 C 1.54151 * 107.03321 * 214.27915 * 15 14 13 17 17 C 1.53905 * 104.97712 * 1.63209 * 16 15 14 18 18 C 1.48655 * 110.99925 * 58.20637 * 14 13 2 19 19 C 1.52314 * 110.58090 * 139.56491 * 17 16 15 20 20 C 1.53266 * 109.22705 * 179.05829 * 19 17 16 21 21 C 1.53038 * 109.16980 * 303.51206 * 20 19 17 22 22 N 1.46852 * 109.66696 * 59.75547 * 21 20 19 23 23 C 1.46899 * 111.00001 * 173.67192 * 22 21 20 24 24 C 1.46989 * 111.11549 * 297.71356 * 22 21 20 25 25 H 1.09009 * 109.47116 * 185.02392 * 1 2 3 26 26 H 1.08996 * 109.47758 * 305.01886 * 1 2 3 27 27 H 1.08997 * 109.47307 * 65.02749 * 1 2 3 28 28 H 1.09007 * 109.46705 * 175.00227 * 4 2 1 29 29 H 1.08996 * 109.47443 * 55.00677 * 4 2 1 30 30 H 0.97003 * 120.00258 * 0.02562 * 8 7 5 31 31 H 1.08997 * 109.46921 * 183.98261 * 13 2 1 32 32 H 1.09005 * 109.46864 * 303.98781 * 13 2 1 33 33 H 1.08994 * 109.92109 * 333.62425 * 15 14 13 34 34 H 1.08996 * 109.92073 * 94.93812 * 15 14 13 35 35 H 1.09001 * 110.33714 * 120.50731 * 16 15 14 36 36 H 1.09001 * 110.33999 * 242.64370 * 16 15 14 37 37 H 1.08997 * 110.67655 * 277.48009 * 18 14 13 38 38 H 1.09005 * 110.67189 * 40.63380 * 18 14 13 39 39 H 1.09002 * 109.50850 * 298.98728 * 19 17 16 40 40 H 1.09002 * 109.51264 * 59.12758 * 19 17 16 41 41 H 1.08998 * 109.51761 * 183.60031 * 20 19 17 42 42 H 1.08998 * 109.57034 * 63.44697 * 20 19 17 43 43 H 1.09001 * 109.44346 * 299.69333 * 21 20 19 44 44 H 1.09007 * 109.40474 * 179.79807 * 21 20 19 45 45 H 1.09006 * 109.46961 * 184.10855 * 23 22 21 46 46 H 1.08997 * 109.47431 * 304.10563 * 23 22 21 47 47 H 1.08995 * 109.47339 * 64.10913 * 23 22 21 48 48 H 1.08999 * 109.44727 * 300.42764 * 24 22 21 49 49 H 1.08999 * 109.44206 * 180.52325 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9931 -0.4015 3.7283 8 7 2.6772 -1.5181 3.8511 9 14 1.4984 0.5628 5.2496 10 1 2.5630 1.5432 5.5822 11 1 0.2266 1.2832 4.9872 12 1 1.3121 -0.3712 6.3890 13 6 2.0400 -0.7212 -1.2492 14 7 1.6306 0.0246 -2.4468 15 6 2.1930 -0.5876 -3.6707 16 6 2.4967 0.5618 -4.6520 17 6 2.1129 1.8445 -3.8930 18 6 2.1509 1.4166 -2.4112 19 6 3.1330 2.9455 -4.1521 20 6 2.7091 4.2131 -3.4021 21 6 1.2959 4.6063 -3.8385 22 7 0.3626 3.5143 -3.5333 23 6 -1.0244 3.9169 -3.8014 24 6 0.7111 2.2961 -4.2784 25 1 -0.3634 -1.0238 0.0900 26 1 -0.3634 0.5897 0.8416 27 1 -0.3634 0.4338 -0.9315 28 1 3.1263 -0.7993 1.2056 29 1 1.6054 -1.7197 1.2952 30 1 2.9344 -2.0187 3.0611 31 1 3.1277 -0.7834 -1.2142 32 1 1.6195 -1.7262 -1.2856 33 1 3.1115 -1.1228 -3.4299 34 1 1.4668 -1.2703 -4.1119 35 1 3.5569 0.5740 -4.9047 36 1 1.8940 0.4588 -5.5544 37 1 1.5032 2.0544 -1.8097 38 1 3.1724 1.4360 -2.0312 39 1 4.1130 2.6241 -3.7991 40 1 3.1806 3.1536 -5.2210 41 1 3.4008 5.0226 -3.6351 42 1 2.7192 4.0229 -2.3289 43 1 1.2883 4.8008 -4.9109 44 1 0.9891 5.5057 -3.3045 45 1 -1.7000 3.1167 -3.4986 46 1 -1.2560 4.8206 -3.2378 47 1 -1.1467 4.1118 -4.8668 48 1 0.6777 2.5029 -5.3480 49 1 -0.0027 1.5078 -4.0392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602677218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:25 Heat of formation + Delta-G solvation = -35.718391 kcal Electronic energy + Delta-G solvation = -23641.403207 eV Core-core repulsion = 20601.164799 eV Total energy + Delta-G solvation = -3040.238408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.36540 -38.79940 -36.98689 -34.92714 -33.92694 -32.22980 -30.15258 -28.41467 -27.77765 -27.59046 -26.02439 -24.64160 -23.80263 -22.76365 -21.48495 -20.77194 -19.45963 -18.83541 -17.06899 -16.75832 -16.28843 -15.95885 -15.77215 -15.68367 -15.45891 -15.22734 -14.95535 -14.51742 -14.04297 -13.88399 -13.79147 -13.73102 -13.50069 -13.13982 -13.06918 -12.83934 -12.76605 -12.67884 -12.51431 -12.36174 -12.07631 -11.94231 -11.88270 -11.68821 -11.52746 -11.34037 -11.28563 -11.16817 -11.09982 -10.55762 -10.51889 -9.31762 -9.15586 -8.65880 -6.34364 1.51513 1.61169 1.78971 2.57371 3.01521 3.07632 3.18581 3.62726 3.67888 3.77023 3.99567 4.11192 4.13948 4.23415 4.29597 4.33328 4.41169 4.43961 4.51542 4.54597 4.62732 4.68635 4.73667 4.78454 4.80269 4.84529 4.86294 4.90565 4.94118 4.99838 5.05612 5.05686 5.07275 5.10145 5.16141 5.26042 5.30695 5.37549 5.41493 5.43309 5.48100 5.63344 6.01557 6.04564 6.13892 6.21430 6.22508 6.24471 6.62233 7.46448 8.74852 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.004321 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.288877 B = 6479.125058 C = 7089.108492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.063 4.063 3 H 0.048 0.952 4 C 0.018 3.982 5 C -0.602 4.602 6 H 0.049 0.951 7 C -0.042 4.042 8 N -0.942 5.942 9 Si 1.118 2.882 10 H -0.273 1.273 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.066 3.934 14 N -0.515 5.515 15 C 0.030 3.970 16 C -0.113 4.113 17 C -0.054 4.054 18 C 0.060 3.940 19 C -0.104 4.104 20 C -0.118 4.118 21 C 0.058 3.942 22 N -0.560 5.560 23 C 0.030 3.970 24 C 0.085 3.915 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.067 0.933 28 H -0.021 1.021 29 H -0.013 1.013 30 H 0.253 0.747 31 H 0.016 0.984 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.021 0.979 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.040 0.960 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.032 0.968 48 H 0.040 0.960 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 11.032 -22.239 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.082 4.082 3 H 0.066 0.934 4 C -0.020 4.020 5 C -0.640 4.640 6 H 0.068 0.932 7 C -0.238 4.238 8 N -0.580 5.580 9 Si 0.939 3.061 10 H -0.198 1.198 11 H -0.194 1.194 12 H -0.208 1.208 13 C -0.063 4.063 14 N -0.238 5.238 15 C -0.098 4.098 16 C -0.151 4.151 17 C -0.055 4.055 18 C -0.068 4.068 19 C -0.142 4.142 20 C -0.156 4.156 21 C -0.070 4.070 22 N -0.285 5.285 23 C -0.118 4.118 24 C -0.043 4.043 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.085 0.915 28 H -0.003 1.003 29 H 0.005 0.995 30 H 0.063 0.937 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.050 0.950 48 H 0.058 0.942 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.013 10.921 -20.121 23.091 hybrid contribution 0.999 -0.413 -1.984 2.259 sum -2.014 10.508 -22.105 24.558 Atomic orbital electron populations 1.21410 0.94496 1.00069 1.00427 1.20876 0.96787 0.97992 0.92580 0.93391 1.19190 0.93477 0.94901 0.94415 1.22419 1.37965 1.10273 0.93383 0.93228 1.27402 0.94029 0.97248 1.05133 1.70889 1.38116 1.16211 1.32768 0.82933 0.76935 0.74424 0.71804 1.19842 1.19408 1.20782 1.22179 0.96259 0.97550 0.90300 1.64789 1.55252 1.02390 1.01391 1.22989 0.98231 0.97671 0.90879 1.22392 1.02266 0.92297 0.98141 1.20944 0.95498 0.95122 0.93893 1.23053 0.96838 0.89767 0.97104 1.21497 0.97451 0.94275 1.00938 1.21623 0.95987 0.97868 1.00137 1.22089 0.92427 0.93615 0.98848 1.61859 1.03305 1.04980 1.58343 1.22312 0.88634 1.01533 0.99336 1.21784 0.95690 0.92092 0.94697 0.94706 0.94724 0.91455 1.00280 0.99483 0.93720 0.96537 0.91561 0.94495 0.89803 0.90296 0.89329 0.90560 0.96096 0.92004 0.90402 0.89890 0.93040 0.94179 0.90589 0.91814 0.91010 0.94968 0.94202 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 8.86 71.98 0.64 -3.79 16 2 C -0.06 -2.80 2.14 -10.80 -0.02 -2.82 16 3 H 0.05 2.20 6.70 -2.38 -0.02 2.18 16 4 C 0.02 0.97 3.76 29.85 0.11 1.08 16 5 C -0.60 -35.67 8.47 25.60 0.22 -35.46 16 6 H 0.05 2.89 7.06 -2.91 -0.02 2.87 16 7 C -0.04 -2.49 5.46 84.65 0.46 -2.03 16 8 N -0.94 -60.44 13.65 21.45 0.29 -60.15 16 9 Si 1.12 52.17 29.90 68.60 2.05 54.22 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 13 C 0.07 2.43 4.24 86.30 0.37 2.80 16 14 N -0.51 -15.68 4.58 -883.57 -4.05 -19.73 16 15 C 0.03 0.72 6.71 86.49 0.58 1.30 16 16 C -0.11 -2.11 6.07 31.29 0.19 -1.92 16 17 C -0.05 -1.14 0.58 -51.92 -0.03 -1.17 16 18 C 0.06 1.76 3.33 86.40 0.29 2.05 16 19 C -0.10 -1.89 4.64 30.46 0.14 -1.75 16 20 C -0.12 -2.21 5.91 30.70 0.18 -2.03 16 21 C 0.06 1.05 5.44 86.33 0.47 1.52 16 22 N -0.56 -12.08 4.28 -923.82 -3.95 -16.03 16 23 C 0.03 0.54 9.60 127.69 1.23 1.76 16 24 C 0.09 1.77 4.05 86.03 0.35 2.12 16 25 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.03 1.52 7.10 -2.39 -0.02 1.50 16 27 H 0.07 2.50 7.58 -2.39 -0.02 2.48 16 28 H -0.02 -1.23 8.01 -2.38 -0.02 -1.25 16 29 H -0.01 -0.76 8.01 -2.39 -0.02 -0.78 16 30 H 0.25 16.52 7.22 -92.71 -0.67 15.85 16 31 H 0.02 0.64 7.97 -2.39 -0.02 0.62 16 32 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.04 0.92 7.67 -2.39 -0.02 0.90 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 1.32 7.82 -2.39 -0.02 1.30 16 36 H 0.09 1.35 7.84 -2.39 -0.02 1.33 16 37 H 0.08 2.58 6.92 -2.39 -0.02 2.57 16 38 H 0.02 0.67 7.82 -2.38 -0.02 0.65 16 39 H 0.06 1.17 8.05 -2.39 -0.02 1.15 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.22 7.55 -2.39 -0.02 1.20 16 43 H 0.04 0.63 8.14 -2.39 -0.02 0.62 16 44 H 0.08 1.30 8.08 -2.38 -0.02 1.28 16 45 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 47 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 1.69 8.06 -2.39 -0.02 1.67 16 Total: -1.00 -67.21 363.83 0.47 -66.74 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.96 Total: 13.29 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 5.17 Total: -38.34 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -7.70 Total: -95.91 kcal Atomic # 14 Polarization: 52.17 SS G_CDS: 2.05 Total: 54.22 kcal Total: -67.21 0.47 -66.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602677218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.019 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds