Wall clock time and date at job start Fri Apr 10 2020 17:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47056 * 2 1 4 4 C 1.46843 * 111.00042 * 314.21354 * 3 2 1 5 5 C 1.53042 * 109.52216 * 174.15686 * 4 3 2 6 6 C 1.53207 * 109.29524 * 59.18099 * 5 4 3 7 7 H 1.08997 * 109.51646 * 62.24247 * 6 5 4 8 8 N 1.46899 * 109.57122 * 182.46146 * 6 5 4 9 9 C 1.46892 * 111.00619 * 58.61363 * 8 6 5 10 10 C 1.46906 * 110.99944 * 294.65382 * 8 6 5 11 11 C 1.52999 * 109.47301 * 196.48666 * 10 8 6 12 12 C 1.50701 * 115.54701 * 40.10379 * 11 10 8 13 13 H 1.08006 * 120.00149 * 265.05552 * 12 11 10 14 14 C 1.37882 * 120.00156 * 85.05757 * 12 11 10 15 15 N 1.31504 * 119.99984 * 4.57407 * 14 12 11 16 16 Si 1.86802 * 119.99785 * 184.58016 * 14 12 11 17 17 H 1.48494 * 109.47460 * 89.99935 * 16 14 12 18 18 H 1.48506 * 109.46688 * 209.99928 * 16 14 12 19 19 H 1.48498 * 109.47104 * 329.99498 * 16 14 12 20 20 C 1.52995 * 117.50199 * 254.39420 * 11 10 8 21 21 C 1.52995 * 117.49910 * 185.76827 * 11 10 8 22 22 C 1.53120 * 109.11592 * 302.36679 * 6 5 4 23 23 C 1.46846 * 111.00233 * 190.00096 * 3 2 1 24 24 H 1.09004 * 109.46003 * 305.86051 * 23 3 2 25 25 C 1.53001 * 109.46201 * 65.82418 * 23 3 2 26 26 H 1.09002 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 299.99482 * 1 2 3 28 28 H 1.09002 * 109.47229 * 59.99714 * 1 2 3 29 29 H 1.09001 * 109.46938 * 240.00518 * 2 1 3 30 30 H 1.08995 * 109.47353 * 120.00671 * 2 1 3 31 31 H 1.09001 * 109.46537 * 294.16959 * 4 3 2 32 32 H 1.09003 * 109.46706 * 54.14622 * 4 3 2 33 33 H 1.08999 * 109.50410 * 179.11664 * 5 4 3 34 34 H 1.08993 * 109.50380 * 299.20419 * 5 4 3 35 35 H 1.09002 * 109.47079 * 61.38677 * 9 8 6 36 36 H 1.08993 * 109.47476 * 181.38887 * 9 8 6 37 37 H 1.08999 * 109.47250 * 301.39304 * 9 8 6 38 38 H 1.08994 * 109.47000 * 316.49463 * 10 8 6 39 39 H 1.08999 * 109.46598 * 76.49329 * 10 8 6 40 40 H 0.97004 * 120.00434 * 185.00622 * 15 14 12 41 41 H 1.08995 * 117.49940 * 359.97438 * 20 11 10 42 42 H 1.08998 * 117.49970 * 145.02155 * 20 11 10 43 43 H 1.09004 * 117.49807 * 214.98678 * 21 11 10 44 44 H 1.09000 * 117.49996 * 0.02562 * 21 11 10 45 45 H 1.08995 * 109.50416 * 297.67803 * 22 6 5 46 46 H 1.09004 * 109.50043 * 177.59787 * 22 6 5 47 47 H 1.08997 * 109.47352 * 180.02562 * 25 23 3 48 48 H 1.09003 * 109.47142 * 300.05473 * 25 23 3 49 49 H 1.08997 * 109.46898 * 60.05545 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2937 2.1998 -0.9826 5 6 1.7263 3.6621 -0.8538 6 6 3.2361 3.7663 -1.0921 7 1 3.4681 3.4403 -2.1060 8 7 3.6678 5.1588 -0.9120 9 6 3.3438 5.6402 0.4374 10 6 3.0778 6.0298 -1.9375 11 6 3.8436 7.3535 -1.9845 12 6 5.3401 7.2439 -1.8443 13 1 5.8020 7.3644 -0.8754 14 6 6.1196 6.9899 -2.9528 15 7 5.5682 6.9325 -4.1453 16 14 7.9591 6.7270 -2.7607 17 1 8.2330 5.2836 -2.5451 18 1 8.6555 7.1849 -3.9899 19 1 8.4510 7.5038 -1.5946 20 6 3.1651 8.5841 -1.3795 21 6 3.2983 8.4530 -2.8980 22 6 3.9654 2.8705 -0.0871 23 6 3.4679 1.4312 -0.2381 24 1 3.9755 0.7936 0.4859 25 6 3.7680 0.9339 -1.6536 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5177 1.8420 -1.9876 32 1 0.2221 2.1207 -0.7994 33 1 1.1989 4.2642 -1.5938 34 1 1.4895 4.0249 0.1463 35 1 3.8698 5.0344 1.1753 36 1 3.6518 6.6811 0.5357 37 1 2.2692 5.5621 0.6028 38 1 3.1389 5.5398 -2.9092 39 1 2.0333 6.2228 -1.6929 40 1 6.1026 6.6825 -4.9153 41 1 2.1730 8.4508 -0.9483 42 1 3.8011 9.3147 -0.8797 43 1 4.0220 9.0973 -3.3973 44 1 2.3938 8.2335 -3.4652 45 1 3.7645 3.2206 0.9253 46 1 5.0379 2.9068 -0.2786 47 1 4.8430 0.9677 -1.8303 48 1 3.4137 -0.0913 -1.7612 49 1 3.2609 1.5715 -2.3777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602779848.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:25 Heat of formation + Delta-G solvation = 40.247006 kcal Electronic energy + Delta-G solvation = -23984.393412 eV Core-core repulsion = 20947.449112 eV Total energy + Delta-G solvation = -3036.944301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.97069 -37.42904 -35.52168 -33.00031 -31.70415 -31.26469 -29.00513 -27.42090 -26.58999 -25.40899 -24.40190 -23.24058 -21.71390 -20.96822 -20.35199 -18.81277 -18.15678 -16.39099 -15.92560 -15.36363 -14.96123 -14.71142 -14.48997 -14.06360 -13.89225 -13.59212 -13.31676 -13.12413 -13.01366 -12.80339 -12.49417 -12.06280 -11.74984 -11.57202 -11.54042 -11.37836 -11.22675 -11.16646 -11.03222 -10.80959 -10.67199 -10.58938 -10.39174 -10.34633 -10.17967 -9.97872 -9.79484 -9.25827 -8.79963 -8.19550 -8.18111 -7.89958 -7.19557 -5.82978 -3.83071 3.42355 3.48075 3.51335 3.92701 4.57377 4.67281 4.85311 4.92905 5.06842 5.18402 5.24400 5.31811 5.34653 5.42147 5.45025 5.49739 5.56238 5.60366 5.68857 5.80796 5.86824 5.90788 5.96318 5.99424 6.03632 6.09167 6.16505 6.22874 6.25358 6.29793 6.35493 6.41121 6.54318 6.60359 6.63207 6.73725 6.81041 6.84005 7.06294 7.17140 7.20924 7.21826 7.53869 7.64444 8.04491 8.09001 8.17155 8.66910 9.13002 9.78676 11.26979 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.020588 B = 0.005135 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.711514 B = 5451.644349 C = 6169.485433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.047 3.953 3 N -0.531 5.531 4 C 0.052 3.948 5 C -0.151 4.151 6 C 0.086 3.914 7 H 0.076 0.924 8 N -0.501 5.501 9 C 0.030 3.970 10 C 0.107 3.893 11 C 0.051 3.949 12 C -0.452 4.452 13 H 0.055 0.945 14 C 0.070 3.930 15 N -0.890 5.890 16 Si 0.884 3.116 17 H -0.282 1.282 18 H -0.292 1.292 19 H -0.277 1.277 20 C -0.219 4.219 21 C -0.154 4.154 22 C -0.102 4.102 23 C 0.084 3.916 24 H 0.078 0.922 25 C -0.189 4.189 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.012 0.988 38 H 0.064 0.936 39 H 0.002 0.998 40 H 0.254 0.746 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.050 0.950 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.499 -12.149 6.683 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.081 4.081 3 N -0.256 5.256 4 C -0.076 4.076 5 C -0.191 4.191 6 C -0.024 4.024 7 H 0.094 0.906 8 N -0.222 5.222 9 C -0.119 4.119 10 C -0.021 4.021 11 C 0.050 3.950 12 C -0.490 4.490 13 H 0.073 0.927 14 C -0.130 4.130 15 N -0.528 5.528 16 Si 0.713 3.287 17 H -0.208 1.208 18 H -0.218 1.218 19 H -0.202 1.202 20 C -0.257 4.257 21 C -0.192 4.192 22 C -0.140 4.140 23 C -0.025 4.025 24 H 0.096 0.904 25 C -0.248 4.248 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.030 0.970 38 H 0.083 0.917 39 H 0.020 0.980 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.000 -11.879 6.891 15.893 hybrid contribution 0.226 -0.624 -0.812 1.049 sum -7.774 -12.503 6.078 15.928 Atomic orbital electron populations 1.21940 0.95382 1.01496 1.02495 1.22102 0.95416 0.89944 1.00659 1.62260 1.03785 1.09796 1.49740 1.22154 0.98200 0.93692 0.93539 1.22349 0.99050 0.95246 1.02448 1.21808 0.91011 0.90367 0.99185 0.90638 1.61982 1.58239 0.99680 1.02268 1.22352 0.96951 1.01490 0.91070 1.21610 0.92048 0.94701 0.93714 1.18860 0.94181 0.84571 0.97343 1.20162 0.88336 1.47207 0.93268 0.92665 1.24835 0.97568 0.95465 0.95160 1.70004 1.35908 1.48608 0.98326 0.86731 0.86587 0.78374 0.77049 1.20843 1.21849 1.20183 1.23075 0.99694 1.05804 0.97100 1.22473 1.00494 1.05894 0.90301 1.21637 1.00227 0.92133 0.99959 1.21669 0.87725 0.97715 0.95410 0.90359 1.22508 1.02733 1.00643 0.98910 0.92537 0.91898 0.92350 0.94666 0.91056 0.94711 0.90790 0.91874 0.91005 0.92624 0.91033 0.97005 0.91715 0.98045 0.93580 0.92321 0.90755 0.89794 0.92479 0.91169 0.90695 0.91730 0.93099 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.16 37.16 0.34 -1.05 16 2 C 0.05 0.47 5.87 -3.83 -0.02 0.45 16 3 N -0.53 -6.53 4.75 -226.69 -1.08 -7.61 16 4 C 0.05 0.67 4.55 -3.83 -0.02 0.65 16 5 C -0.15 -2.24 4.72 -26.60 -0.13 -2.37 16 6 C 0.09 1.44 1.97 -67.54 -0.13 1.31 16 7 H 0.08 1.39 6.39 -51.93 -0.33 1.06 16 8 N -0.50 -9.99 4.03 -234.69 -0.95 -10.94 16 9 C 0.03 0.53 8.67 60.06 0.52 1.06 16 10 C 0.11 2.35 4.32 -3.82 -0.02 2.33 16 11 C 0.05 1.24 1.01 -155.67 -0.16 1.09 16 12 C -0.45 -12.20 8.17 -34.44 -0.28 -12.48 16 13 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 14 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 15 N -0.89 -25.39 12.65 55.43 0.70 -24.69 16 16 Si 0.88 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C -0.22 -4.84 9.38 -26.73 -0.25 -5.09 16 21 C -0.15 -3.67 9.17 -26.73 -0.25 -3.91 16 22 C -0.10 -1.52 4.75 -26.65 -0.13 -1.65 16 23 C 0.08 1.06 2.93 -67.73 -0.20 0.86 16 24 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 25 C -0.19 -2.35 8.20 37.16 0.30 -2.05 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.53 6.21 -51.93 -0.32 0.21 16 29 H 0.04 0.36 6.07 -51.93 -0.32 0.04 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.45 6.19 -51.93 -0.32 0.13 16 32 H 0.07 0.86 5.81 -51.93 -0.30 0.56 16 33 H 0.06 0.98 7.07 -51.93 -0.37 0.61 16 34 H 0.07 1.10 6.24 -51.93 -0.32 0.77 16 35 H 0.06 0.92 6.35 -51.93 -0.33 0.59 16 36 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 37 H 0.01 0.20 6.16 -51.93 -0.32 -0.12 16 38 H 0.06 1.55 7.87 -51.93 -0.41 1.15 16 39 H 0.00 0.03 7.11 -51.93 -0.37 -0.34 16 40 H 0.25 7.04 8.32 -40.82 -0.34 6.70 16 41 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 42 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.08 2.17 8.14 -51.93 -0.42 1.75 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.07 1.06 6.34 -51.93 -0.33 0.73 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.56 6.35 -51.93 -0.33 0.23 16 49 H 0.06 0.88 4.80 -51.93 -0.25 0.64 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -27.81 353.98 -10.27 -38.07 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.75 Total: 2.17 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -0.51 Total: -19.00 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -1.32 Total: -43.24 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.81 -10.27 -38.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602779848.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.322 kcal (2) G-P(sol) polarization free energy of solvation -27.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds