Wall clock time and date at job start Fri Apr 10 2020 17:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47056 * 2 1 4 4 C 1.46843 * 111.00042 * 314.21354 * 3 2 1 5 5 C 1.53042 * 109.52216 * 174.15686 * 4 3 2 6 6 C 1.53207 * 109.29524 * 59.18099 * 5 4 3 7 7 H 1.08997 * 109.51646 * 62.24247 * 6 5 4 8 8 N 1.46899 * 109.57122 * 182.46146 * 6 5 4 9 9 C 1.46892 * 111.00619 * 58.61363 * 8 6 5 10 10 C 1.46906 * 110.99944 * 294.65382 * 8 6 5 11 11 C 1.52999 * 109.47301 * 196.48666 * 10 8 6 12 12 C 1.50701 * 115.54701 * 40.10379 * 11 10 8 13 13 H 1.08006 * 120.00149 * 265.05552 * 12 11 10 14 14 C 1.37882 * 120.00156 * 85.05757 * 12 11 10 15 15 N 1.31504 * 119.99984 * 4.57407 * 14 12 11 16 16 Si 1.86802 * 119.99785 * 184.58016 * 14 12 11 17 17 H 1.48494 * 109.47460 * 89.99935 * 16 14 12 18 18 H 1.48506 * 109.46688 * 209.99928 * 16 14 12 19 19 H 1.48498 * 109.47104 * 329.99498 * 16 14 12 20 20 C 1.52995 * 117.50199 * 254.39420 * 11 10 8 21 21 C 1.52995 * 117.49910 * 185.76827 * 11 10 8 22 22 C 1.53120 * 109.11592 * 302.36679 * 6 5 4 23 23 C 1.46846 * 111.00233 * 190.00096 * 3 2 1 24 24 H 1.09004 * 109.46003 * 305.86051 * 23 3 2 25 25 C 1.53001 * 109.46201 * 65.82418 * 23 3 2 26 26 H 1.09002 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 299.99482 * 1 2 3 28 28 H 1.09002 * 109.47229 * 59.99714 * 1 2 3 29 29 H 1.09001 * 109.46938 * 240.00518 * 2 1 3 30 30 H 1.08995 * 109.47353 * 120.00671 * 2 1 3 31 31 H 1.09001 * 109.46537 * 294.16959 * 4 3 2 32 32 H 1.09003 * 109.46706 * 54.14622 * 4 3 2 33 33 H 1.08999 * 109.50410 * 179.11664 * 5 4 3 34 34 H 1.08993 * 109.50380 * 299.20419 * 5 4 3 35 35 H 1.09002 * 109.47079 * 61.38677 * 9 8 6 36 36 H 1.08993 * 109.47476 * 181.38887 * 9 8 6 37 37 H 1.08999 * 109.47250 * 301.39304 * 9 8 6 38 38 H 1.08994 * 109.47000 * 316.49463 * 10 8 6 39 39 H 1.08999 * 109.46598 * 76.49329 * 10 8 6 40 40 H 0.97004 * 120.00434 * 185.00622 * 15 14 12 41 41 H 1.08995 * 117.49940 * 359.97438 * 20 11 10 42 42 H 1.08998 * 117.49970 * 145.02155 * 20 11 10 43 43 H 1.09004 * 117.49807 * 214.98678 * 21 11 10 44 44 H 1.09000 * 117.49996 * 0.02562 * 21 11 10 45 45 H 1.08995 * 109.50416 * 297.67803 * 22 6 5 46 46 H 1.09004 * 109.50043 * 177.59787 * 22 6 5 47 47 H 1.08997 * 109.47352 * 180.02562 * 25 23 3 48 48 H 1.09003 * 109.47142 * 300.05473 * 25 23 3 49 49 H 1.08997 * 109.46898 * 60.05545 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2937 2.1998 -0.9826 5 6 1.7263 3.6621 -0.8538 6 6 3.2361 3.7663 -1.0921 7 1 3.4681 3.4403 -2.1060 8 7 3.6678 5.1588 -0.9120 9 6 3.3438 5.6402 0.4374 10 6 3.0778 6.0298 -1.9375 11 6 3.8436 7.3535 -1.9845 12 6 5.3401 7.2439 -1.8443 13 1 5.8020 7.3644 -0.8754 14 6 6.1196 6.9899 -2.9528 15 7 5.5682 6.9325 -4.1453 16 14 7.9591 6.7270 -2.7607 17 1 8.2330 5.2836 -2.5451 18 1 8.6555 7.1849 -3.9899 19 1 8.4510 7.5038 -1.5946 20 6 3.1651 8.5841 -1.3795 21 6 3.2983 8.4530 -2.8980 22 6 3.9654 2.8705 -0.0871 23 6 3.4679 1.4312 -0.2381 24 1 3.9755 0.7936 0.4859 25 6 3.7680 0.9339 -1.6536 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5177 1.8420 -1.9876 32 1 0.2221 2.1207 -0.7994 33 1 1.1989 4.2642 -1.5938 34 1 1.4895 4.0249 0.1463 35 1 3.8698 5.0344 1.1753 36 1 3.6518 6.6811 0.5357 37 1 2.2692 5.5621 0.6028 38 1 3.1389 5.5398 -2.9092 39 1 2.0333 6.2228 -1.6929 40 1 6.1026 6.6825 -4.9153 41 1 2.1730 8.4508 -0.9483 42 1 3.8011 9.3147 -0.8797 43 1 4.0220 9.0973 -3.3973 44 1 2.3938 8.2335 -3.4652 45 1 3.7645 3.2206 0.9253 46 1 5.0379 2.9068 -0.2786 47 1 4.8430 0.9677 -1.8303 48 1 3.4137 -0.0913 -1.7612 49 1 3.2609 1.5715 -2.3777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602779848.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:24 Heat of formation + Delta-G solvation = 24.467697 kcal Electronic energy + Delta-G solvation = -23985.077655 eV Core-core repulsion = 20947.449112 eV Total energy + Delta-G solvation = -3037.628543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.12769 -39.00150 -37.06856 -34.08144 -33.78205 -32.42762 -30.06558 -28.69399 -27.95801 -27.38685 -25.78190 -24.41483 -22.83900 -22.78917 -21.55055 -20.72577 -19.31291 -17.86763 -17.46342 -16.61271 -16.52585 -16.00410 -15.79450 -15.76877 -15.26753 -14.91503 -14.67121 -14.36374 -14.30627 -14.05198 -13.88921 -13.37010 -13.20310 -12.97188 -12.78082 -12.63506 -12.57872 -12.51104 -12.49936 -12.37297 -12.27102 -12.07857 -11.89689 -11.81509 -11.61745 -11.32193 -11.19169 -11.01363 -10.75554 -10.22018 -9.81385 -9.14408 -8.70905 -7.95044 -5.98958 1.44694 1.46627 1.53910 2.53476 2.97536 3.21527 3.36687 3.59799 3.80162 3.91615 4.09678 4.15363 4.23411 4.28966 4.39555 4.41720 4.45701 4.49148 4.56731 4.59271 4.63768 4.69823 4.72404 4.73176 4.78541 4.84405 4.88508 4.96076 5.01205 5.02806 5.09709 5.13341 5.16104 5.20223 5.23437 5.28094 5.31888 5.34479 5.39345 5.51746 5.70148 5.73532 5.92800 6.20233 6.24114 6.43878 6.61460 6.68112 7.02186 7.64596 9.14147 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.020588 B = 0.005135 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.711514 B = 5451.644349 C = 6169.485433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 N -0.536 5.536 4 C 0.058 3.942 5 C -0.141 4.141 6 C 0.088 3.912 7 H 0.053 0.947 8 N -0.524 5.524 9 C 0.037 3.963 10 C 0.124 3.876 11 C 0.028 3.972 12 C -0.455 4.455 13 H 0.044 0.956 14 C 0.026 3.974 15 N -0.916 5.916 16 Si 0.937 3.063 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.272 1.272 20 C -0.192 4.192 21 C -0.162 4.162 22 C -0.095 4.095 23 C 0.089 3.911 24 H 0.094 0.906 25 C -0.185 4.185 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.027 0.973 38 H 0.034 0.966 39 H 0.015 0.985 40 H 0.252 0.748 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.067 0.933 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.431 -13.590 8.243 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.082 4.082 3 N -0.261 5.261 4 C -0.070 4.070 5 C -0.181 4.181 6 C -0.021 4.021 7 H 0.071 0.929 8 N -0.246 5.246 9 C -0.111 4.111 10 C -0.004 4.004 11 C 0.027 3.973 12 C -0.493 4.493 13 H 0.062 0.938 14 C -0.172 4.172 15 N -0.557 5.557 16 Si 0.764 3.236 17 H -0.208 1.208 18 H -0.219 1.219 19 H -0.197 1.197 20 C -0.229 4.229 21 C -0.200 4.200 22 C -0.133 4.133 23 C -0.020 4.020 24 H 0.112 0.888 25 C -0.243 4.243 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.033 0.967 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.933 -13.324 8.469 18.140 hybrid contribution 0.509 -0.169 -1.272 1.381 sum -8.424 -13.494 7.197 17.460 Atomic orbital electron populations 1.21910 0.94325 1.02555 1.02156 1.22194 0.96308 0.88497 1.01207 1.62262 1.03269 1.11208 1.49330 1.22085 0.99097 0.92265 0.93564 1.22210 0.97110 0.96835 1.01942 1.21765 0.92828 0.88875 0.98602 0.92923 1.61886 1.59161 1.00868 1.02668 1.22282 0.98036 1.00561 0.90219 1.21274 0.92467 0.93561 0.93075 1.19000 0.93479 0.86235 0.98609 1.20346 0.90051 1.46329 0.92563 0.93778 1.25419 1.00921 0.95760 0.95052 1.70109 1.36991 1.49839 0.98736 0.85892 0.82635 0.78130 0.76911 1.20763 1.21871 1.19693 1.23034 1.00558 1.03843 0.95468 1.22362 1.00342 1.05750 0.91545 1.21563 0.99122 0.93420 0.99218 1.21605 0.88385 0.96181 0.95864 0.88829 1.22454 1.02236 1.01253 0.98373 0.90871 0.92168 0.92673 0.94443 0.90093 0.95177 0.89232 0.92844 0.90978 0.91293 0.92787 0.95477 0.94736 0.96711 0.93898 0.89670 0.90901 0.92452 0.91443 0.90970 0.92242 0.92266 0.91410 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.16 71.98 0.66 -1.60 16 2 C 0.05 0.79 5.87 86.30 0.51 1.29 16 3 N -0.54 -11.92 4.75 -871.12 -4.14 -16.06 16 4 C 0.06 1.38 4.55 86.33 0.39 1.77 16 5 C -0.14 -4.03 4.72 30.68 0.14 -3.89 16 6 C 0.09 2.95 1.97 45.02 0.09 3.04 16 7 H 0.05 2.00 6.39 -2.39 -0.02 1.98 16 8 N -0.52 -20.87 4.03 -896.43 -3.62 -24.49 16 9 C 0.04 1.28 8.67 127.69 1.11 2.39 16 10 C 0.12 5.49 4.32 86.30 0.37 5.86 16 11 C 0.03 1.34 1.01 -52.93 -0.05 1.29 16 12 C -0.45 -24.82 8.17 25.60 0.21 -24.61 16 13 H 0.04 2.46 7.82 -2.91 -0.02 2.43 16 14 C 0.03 1.47 5.43 84.66 0.46 1.93 16 15 N -0.92 -53.47 12.65 21.45 0.27 -53.20 16 16 Si 0.94 45.06 29.54 68.60 2.03 47.08 16 17 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 18 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 19 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 20 C -0.19 -8.25 9.38 30.59 0.29 -7.96 16 21 C -0.16 -7.78 9.17 30.59 0.28 -7.50 16 22 C -0.10 -2.77 4.75 30.64 0.15 -2.62 16 23 C 0.09 2.09 2.93 44.94 0.13 2.23 16 24 H 0.09 1.97 8.12 -2.39 -0.02 1.95 16 25 C -0.18 -4.38 8.20 71.98 0.59 -3.79 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 0.86 6.21 -2.39 -0.01 0.84 16 29 H 0.04 0.65 6.07 -2.39 -0.01 0.64 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.03 0.75 6.19 -2.39 -0.01 0.74 16 32 H 0.09 1.87 5.81 -2.39 -0.01 1.86 16 33 H 0.05 1.61 7.07 -2.39 -0.02 1.60 16 34 H 0.07 2.06 6.24 -2.39 -0.01 2.04 16 35 H 0.07 2.18 6.35 -2.39 -0.02 2.17 16 36 H 0.05 2.06 6.95 -2.39 -0.02 2.04 16 37 H 0.03 0.85 6.16 -2.39 -0.01 0.84 16 38 H 0.03 1.70 7.87 -2.39 -0.02 1.68 16 39 H 0.01 0.61 7.11 -2.39 -0.02 0.59 16 40 H 0.25 14.26 8.32 -92.71 -0.77 13.49 16 41 H 0.08 3.21 8.08 -2.39 -0.02 3.19 16 42 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.07 2.06 6.34 -2.39 -0.02 2.04 16 46 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 47 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.07 1.37 6.35 -2.39 -0.02 1.35 16 49 H 0.05 1.30 4.80 -2.39 -0.01 1.29 16 Total: -1.00 -59.38 353.98 0.77 -58.61 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.90 Total: 20.21 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 5.32 Total: -32.16 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -7.48 Total: -93.75 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -59.38 0.77 -58.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602779848.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.082 kcal (2) G-P(sol) polarization free energy of solvation -59.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds