Wall clock time and date at job start Fri Apr 10 2020 17:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.47280 * 2 1 4 4 C 1.46896 * 110.99881 * 162.29656 * 3 2 1 5 5 C 1.52995 * 109.47376 * 288.12625 * 4 3 2 6 6 C 1.46905 * 110.99602 * 286.24809 * 3 2 1 7 7 C 1.52998 * 109.46962 * 170.00205 * 6 3 2 8 8 H 1.08999 * 110.62926 * 51.89419 * 7 6 3 9 9 C 1.55147 * 110.85647 * 288.68497 * 7 6 3 10 10 C 1.54902 * 101.65386 * 205.89493 * 9 7 6 11 11 N 1.47852 * 104.79589 * 37.06832 * 10 9 7 12 12 C 1.46899 * 110.99710 * 213.63571 * 11 10 9 13 13 C 1.53003 * 109.47235 * 286.38594 * 12 11 10 14 14 C 1.50697 * 115.54481 * 63.94685 * 13 12 11 15 15 H 1.08010 * 120.00083 * 240.01891 * 14 13 12 16 16 C 1.37882 * 120.00315 * 60.02176 * 14 13 12 17 17 N 1.31503 * 119.99841 * 1.48092 * 16 14 13 18 18 Si 1.86797 * 119.99952 * 181.75830 * 16 14 13 19 19 H 1.48503 * 109.47218 * 59.99850 * 18 16 14 20 20 H 1.48506 * 109.47123 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47331 * 299.99659 * 18 16 14 22 22 C 1.52995 * 117.49959 * 209.61239 * 13 12 11 23 23 C 1.53003 * 117.50146 * 278.27529 * 13 12 11 24 24 C 1.47439 * 108.56667 * 335.90831 * 11 10 9 25 25 H 1.08994 * 109.47350 * 185.84043 * 1 2 3 26 26 H 1.09001 * 109.47144 * 305.84612 * 1 2 3 27 27 H 1.09001 * 109.46742 * 65.83618 * 1 2 3 28 28 H 1.08997 * 109.46886 * 239.99120 * 2 1 3 29 29 H 1.09009 * 109.46447 * 119.99381 * 2 1 3 30 30 H 1.08997 * 109.47183 * 48.13483 * 4 3 2 31 31 H 1.09009 * 109.46853 * 168.12791 * 4 3 2 32 32 H 1.08995 * 109.47190 * 305.55054 * 5 4 3 33 33 H 1.09007 * 109.46943 * 65.54662 * 5 4 3 34 34 H 1.08991 * 109.47350 * 185.54461 * 5 4 3 35 35 H 1.09003 * 109.46731 * 50.00101 * 6 3 2 36 36 H 1.08996 * 109.46941 * 290.00306 * 6 3 2 37 37 H 1.09002 * 110.98770 * 323.98913 * 9 7 6 38 38 H 1.09000 * 110.98617 * 87.76421 * 9 7 6 39 39 H 1.08999 * 110.37315 * 278.24164 * 10 9 7 40 40 H 1.09000 * 110.37226 * 155.90272 * 10 9 7 41 41 H 1.09005 * 109.46433 * 166.39394 * 12 11 10 42 42 H 1.08996 * 109.47428 * 46.39366 * 12 11 10 43 43 H 0.97002 * 120.00204 * 180.02562 * 17 16 14 44 44 H 1.08998 * 117.50199 * 215.00672 * 22 13 12 45 45 H 1.08998 * 117.49830 * 0.02756 * 22 13 12 46 46 H 1.08993 * 117.49615 * 359.97438 * 23 13 12 47 47 H 1.09002 * 117.49748 * 144.97246 * 23 13 12 48 48 H 1.08994 * 109.89057 * 120.39764 * 24 11 10 49 49 H 1.09008 * 109.88459 * 241.58010 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4270 1.4458 0.4170 5 6 3.5273 1.1598 1.9167 6 6 1.8334 2.0092 -1.3167 7 6 2.1185 3.5089 -1.2151 8 1 3.0882 3.6848 -0.7495 9 6 0.9934 4.2330 -0.4295 10 6 1.0858 5.6690 -1.0029 11 7 1.4018 5.4840 -2.4353 12 6 2.2623 6.5675 -2.9287 13 6 1.4378 7.8483 -3.0726 14 6 0.8772 8.4077 -1.7905 15 1 -0.1907 8.5158 -1.6697 16 6 1.7275 8.7816 -0.7714 17 7 3.0288 8.6773 -0.9294 18 14 1.0306 9.4289 0.8363 19 1 0.1648 8.3923 1.4536 20 1 2.1444 9.7582 1.7617 21 1 0.2286 10.6505 0.5720 22 6 1.8643 8.8456 -4.1516 23 6 0.5967 8.0085 -4.3406 24 6 2.0529 4.1723 -2.6068 25 1 -0.3634 -1.0223 0.1046 26 1 -0.3633 0.6018 0.8330 27 1 -0.3633 0.4207 -0.9376 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.0017 0.7015 -0.1341 31 1 3.8249 2.4391 0.2091 32 1 2.8749 1.8423 2.4612 33 1 3.2216 0.1318 2.1117 34 1 4.5568 1.3013 2.2454 35 1 0.8067 1.8561 -1.6493 36 1 2.5188 1.5568 -2.0335 37 1 0.0208 3.7893 -0.6423 38 1 1.1979 4.2255 0.6411 39 1 1.8817 6.2250 -0.5075 40 1 0.1327 6.1854 -0.8881 41 1 2.6752 6.2904 -3.8988 42 1 3.0753 6.7361 -2.2226 43 1 3.6270 8.9400 -0.2124 44 1 1.7394 9.9064 -3.9342 45 1 2.7320 8.5891 -4.7593 46 1 0.6312 7.2016 -5.0725 47 1 -0.3623 8.5182 -4.2474 48 1 1.4664 3.5531 -3.2856 49 1 3.0601 4.3071 -3.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602781041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:33 Heat of formation + Delta-G solvation = 28.117384 kcal Electronic energy + Delta-G solvation = -23462.472170 eV Core-core repulsion = 20425.001889 eV Total energy + Delta-G solvation = -3037.470281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.03794 -37.58461 -35.87897 -32.05177 -31.92533 -31.80055 -29.32400 -28.12002 -25.84295 -24.96679 -23.56145 -23.06281 -20.99559 -20.91052 -20.00446 -19.46868 -18.83883 -16.26938 -15.86851 -15.61044 -14.93963 -14.63105 -14.54238 -14.05752 -13.93122 -13.72885 -13.35926 -12.98646 -12.66279 -12.49461 -12.21992 -12.00902 -11.92262 -11.69493 -11.61617 -11.50952 -11.15318 -10.99945 -10.83932 -10.82409 -10.70325 -10.48156 -10.35748 -10.31818 -10.11491 -9.98532 -9.80137 -9.26210 -8.75647 -8.42632 -8.29036 -8.01736 -7.14618 -5.97883 -3.98890 3.31991 3.36934 3.40464 3.84793 4.43191 4.85880 4.89279 4.93776 5.08609 5.12844 5.19554 5.26538 5.38607 5.40843 5.44610 5.53126 5.58052 5.64555 5.71310 5.79345 5.86699 5.90229 5.97944 6.01500 6.11713 6.16495 6.17951 6.21131 6.27728 6.43685 6.50344 6.59327 6.68134 6.69965 6.88409 6.89825 7.02924 7.10328 7.12013 7.15174 7.26722 7.28404 7.50952 7.59920 7.92618 8.17834 8.28058 8.55823 8.97691 9.60573 11.08698 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.004799 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.988825 B = 5833.691672 C = 6549.319024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.045 3.955 5 C -0.146 4.146 6 C 0.069 3.931 7 C -0.105 4.105 8 H 0.071 0.929 9 C -0.115 4.115 10 C 0.063 3.937 11 N -0.517 5.517 12 C 0.092 3.908 13 C 0.063 3.937 14 C -0.475 4.475 15 H 0.057 0.943 16 C 0.071 3.929 17 N -0.885 5.885 18 Si 0.880 3.120 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.189 4.189 23 C -0.199 4.199 24 C 0.049 3.951 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.028 0.972 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.030 0.970 42 H 0.064 0.936 43 H 0.259 0.741 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -15.714 2.078 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 N -0.259 5.259 4 C -0.082 4.082 5 C -0.203 4.203 6 C -0.059 4.059 7 C -0.125 4.125 8 H 0.089 0.911 9 C -0.154 4.154 10 C -0.064 4.064 11 N -0.241 5.241 12 C -0.036 4.036 13 C 0.063 3.937 14 C -0.513 4.513 15 H 0.075 0.925 16 C -0.131 4.131 17 N -0.522 5.522 18 Si 0.707 3.293 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.227 4.227 23 C -0.236 4.236 24 C -0.080 4.080 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.466 -15.394 2.227 15.561 hybrid contribution 1.047 -0.017 0.637 1.226 sum 0.581 -15.411 2.864 15.685 Atomic orbital electron populations 1.21769 0.94917 1.01096 1.02667 1.22092 0.96253 0.89209 1.00320 1.62049 1.18713 1.16845 1.28338 1.22139 0.88540 1.01491 0.96074 1.21771 1.01394 1.01464 0.95709 1.22136 1.01071 0.94225 0.88501 1.22415 0.99689 0.93261 0.97126 0.91118 1.22731 0.97391 0.96382 0.98847 1.23029 1.02623 0.93810 0.86946 1.63469 1.42235 1.00236 1.18148 1.21810 0.94658 0.89976 0.97128 1.18735 0.95294 0.91511 0.88197 1.20405 0.92522 1.40628 0.97721 0.92493 1.24885 0.94754 0.95386 0.98032 1.69932 1.01746 1.47848 1.32716 0.86851 0.78713 0.79715 0.83978 1.19903 1.21394 1.20324 1.22791 0.95992 0.97622 1.06329 1.22766 0.94657 1.02405 1.03805 1.22790 0.97267 0.92462 0.95517 0.92769 0.91694 0.92714 0.95263 0.91056 0.95335 0.90257 0.91654 0.93191 0.92575 0.90416 0.95422 0.91850 0.91846 0.92326 0.90186 0.95134 0.91768 0.93149 0.90626 0.92201 0.91642 0.91046 0.91941 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.90 37.16 0.37 -1.05 16 2 C 0.05 0.50 5.54 -3.82 -0.02 0.48 16 3 N -0.53 -6.43 4.33 -234.62 -1.01 -7.44 16 4 C 0.05 0.51 5.56 -3.83 -0.02 0.49 16 5 C -0.15 -1.46 9.88 37.16 0.37 -1.10 16 6 C 0.07 0.88 4.10 -3.82 -0.02 0.87 16 7 C -0.11 -1.63 2.90 -88.79 -0.26 -1.88 16 8 H 0.07 1.14 6.10 -51.93 -0.32 0.82 16 9 C -0.12 -1.97 6.45 -24.59 -0.16 -2.13 16 10 C 0.06 1.34 5.00 -2.30 -0.01 1.33 16 11 N -0.52 -10.83 5.13 -231.25 -1.19 -12.02 16 12 C 0.09 2.14 4.50 -3.82 -0.02 2.12 16 13 C 0.06 1.57 1.64 -155.66 -0.26 1.31 16 14 C -0.47 -12.58 6.37 -34.44 -0.22 -12.80 16 15 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 16 C 0.07 1.88 4.09 -17.82 -0.07 1.81 16 17 N -0.88 -24.22 11.76 55.43 0.65 -23.57 16 18 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.19 -4.46 9.93 -26.69 -0.27 -4.73 16 23 C -0.20 -4.50 9.96 -26.69 -0.27 -4.76 16 24 C 0.05 0.84 6.44 -2.84 -0.02 0.82 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.55 6.89 -51.93 -0.36 0.19 16 28 H 0.03 0.29 8.03 -51.93 -0.42 -0.12 16 29 H 0.07 0.67 6.35 -51.92 -0.33 0.34 16 30 H 0.03 0.31 8.05 -51.93 -0.42 -0.11 16 31 H 0.08 0.99 5.87 -51.92 -0.30 0.69 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.45 6.72 -51.93 -0.35 0.10 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.01 6.48 -51.93 -0.34 0.67 16 36 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 37 H 0.06 1.05 7.95 -51.93 -0.41 0.64 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.40 6.33 -51.93 -0.33 1.07 16 40 H 0.08 1.83 7.24 -51.93 -0.38 1.46 16 41 H 0.03 0.68 7.86 -51.93 -0.41 0.27 16 42 H 0.06 1.66 6.18 -51.93 -0.32 1.34 16 43 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 44 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 45 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 48 H 0.06 1.01 7.82 -51.93 -0.41 0.60 16 49 H 0.04 0.72 7.49 -51.92 -0.39 0.33 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -26.71 367.20 -11.14 -37.86 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -9.24 Total: 3.12 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -0.86 Total: -19.22 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -1.55 Total: -43.03 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.71 -11.14 -37.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602781041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.976 kcal (2) G-P(sol) polarization free energy of solvation -26.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds