Wall clock time and date at job start Fri Apr 10 2020 17:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.47216 * 2 1 4 4 C 1.46897 * 110.99763 * 66.04758 * 3 2 1 5 5 C 1.53001 * 109.47519 * 199.64149 * 4 3 2 6 6 C 1.46898 * 111.00034 * 190.00042 * 3 2 1 7 7 C 1.53007 * 109.47113 * 75.76675 * 6 3 2 8 8 H 1.08995 * 110.27138 * 303.48343 * 7 6 3 9 9 C 1.54595 * 110.39035 * 65.62555 * 7 6 3 10 10 C 1.54928 * 102.92172 * 140.91691 * 9 7 6 11 11 N 1.48533 * 103.22807 * 322.58651 * 10 9 7 12 12 C 1.46900 * 111.00042 * 159.72069 * 11 10 9 13 13 C 1.52997 * 109.47386 * 58.69844 * 12 11 10 14 14 C 1.50700 * 115.54949 * 54.49310 * 13 12 11 15 15 H 1.07998 * 120.00238 * 219.67064 * 14 13 12 16 16 C 1.37878 * 120.00238 * 39.94066 * 14 13 12 17 17 N 1.31518 * 119.99856 * 10.08148 * 16 14 13 18 18 Si 1.86799 * 120.00061 * 190.08283 * 16 14 13 19 19 H 1.48495 * 109.47383 * 60.00221 * 18 16 14 20 20 H 1.48504 * 109.46898 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47036 * 300.00001 * 18 16 14 22 22 C 1.52997 * 117.52196 * 200.19099 * 13 12 11 23 23 C 1.52998 * 117.49865 * 268.82398 * 13 12 11 24 24 C 1.47898 * 105.82204 * 39.20582 * 11 10 9 25 25 H 1.09001 * 109.47323 * 59.99990 * 1 2 3 26 26 H 1.09000 * 109.47062 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46866 * 299.99579 * 1 2 3 28 28 H 1.09001 * 109.46866 * 240.00421 * 2 1 3 29 29 H 1.09001 * 109.47136 * 120.00530 * 2 1 3 30 30 H 1.09009 * 109.47179 * 319.64094 * 4 3 2 31 31 H 1.09000 * 109.46913 * 79.63838 * 4 3 2 32 32 H 1.09007 * 109.46766 * 304.31623 * 5 4 3 33 33 H 1.09002 * 109.47034 * 64.30783 * 5 4 3 34 34 H 1.08993 * 109.47456 * 184.31474 * 5 4 3 35 35 H 1.09001 * 109.47226 * 315.76677 * 6 3 2 36 36 H 1.08994 * 109.47099 * 195.76463 * 6 3 2 37 37 H 1.09010 * 110.72241 * 259.27617 * 9 7 6 38 38 H 1.08998 * 110.72863 * 22.37660 * 9 7 6 39 39 H 1.08996 * 110.67177 * 204.14868 * 10 9 7 40 40 H 1.09002 * 110.66848 * 81.01997 * 10 9 7 41 41 H 1.08994 * 109.47305 * 298.69221 * 12 11 10 42 42 H 1.09007 * 109.46933 * 178.69912 * 12 11 10 43 43 H 0.97002 * 119.99883 * 184.99003 * 17 16 14 44 44 H 1.08994 * 117.50338 * 214.97283 * 22 13 12 45 45 H 1.09007 * 117.49501 * 359.97438 * 22 13 12 46 46 H 1.08997 * 117.49683 * 359.97096 * 23 13 12 47 47 H 1.08996 * 117.49624 * 144.99826 * 23 13 12 48 48 H 1.09002 * 109.92205 * 94.02149 * 24 11 10 49 49 H 1.08997 * 109.91859 * 215.12407 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 1.7402 3.5813 1.0468 6 6 3.4685 1.4311 -0.2382 7 6 3.7502 1.1742 -1.7199 8 1 3.3185 0.2216 -2.0268 9 6 3.1820 2.3237 -2.5835 10 6 4.2717 2.5133 -3.6683 11 7 5.5369 2.2971 -2.9207 12 6 6.6375 1.9621 -3.8342 13 6 6.8225 3.0941 -4.8467 14 6 7.0246 4.4664 -4.2576 15 1 6.5571 5.3252 -4.7163 16 6 7.8107 4.6264 -3.1363 17 7 8.5413 3.6249 -2.6970 18 14 7.8382 6.2656 -2.2410 19 1 6.4693 6.5950 -1.7692 20 1 8.7559 6.1784 -1.0767 21 1 8.3118 7.3268 -3.1656 22 6 7.5620 2.7671 -6.1455 23 6 6.0496 2.9974 -6.1635 24 6 5.2671 1.1838 -1.9851 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.6592 1.7870 1.5496 31 1 2.3719 1.7738 2.0342 32 1 2.7292 3.8521 0.6769 33 1 0.9854 3.8843 0.3211 34 1 1.5561 4.0862 1.9950 35 1 3.9601 0.6663 0.3631 36 1 3.8512 2.4132 0.0394 37 1 2.2336 2.0338 -3.0359 38 1 3.0633 3.2300 -1.9896 39 1 4.2349 3.5225 -4.0784 40 1 4.1606 1.7714 -4.4591 41 1 6.4033 1.0375 -4.3616 42 1 7.5567 1.8316 -3.2630 43 1 9.0378 3.7136 -1.8684 44 1 8.1947 3.5444 -6.5739 45 1 7.9174 1.7452 -6.2787 46 1 5.4096 2.1271 -6.3087 47 1 5.6873 3.9263 -6.6037 48 1 5.5714 0.2387 -2.4348 49 1 5.8090 1.3427 -1.0528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602781042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:39 Heat of formation + Delta-G solvation = 32.523412 kcal Electronic energy + Delta-G solvation = -23535.226001 eV Core-core repulsion = 20497.946780 eV Total energy + Delta-G solvation = -3037.279221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.03496 -37.63205 -35.89335 -31.97949 -31.87427 -31.75931 -29.39515 -28.11419 -25.72222 -24.92029 -23.55406 -23.09969 -21.23879 -20.71425 -20.17788 -19.36299 -18.82244 -16.25411 -15.91328 -15.51151 -14.96452 -14.58037 -14.51744 -14.13777 -13.88301 -13.59929 -13.45074 -13.15006 -12.75631 -12.45452 -12.17848 -11.93947 -11.87322 -11.61649 -11.51432 -11.34344 -11.16281 -10.94506 -10.85556 -10.77388 -10.67511 -10.49782 -10.44090 -10.34765 -10.12256 -9.91679 -9.90575 -9.14573 -8.93454 -8.51250 -8.26421 -7.87889 -7.18697 -5.85683 -3.85708 3.42241 3.46197 3.51342 3.86783 4.56230 4.85599 4.91937 4.98337 5.08812 5.16188 5.22874 5.25038 5.36006 5.41123 5.48392 5.54575 5.61733 5.70652 5.73591 5.79853 5.88339 5.96403 5.97997 5.99757 6.07118 6.11904 6.17552 6.24946 6.30272 6.32972 6.45920 6.51192 6.60687 6.64215 6.74797 6.84437 6.87858 6.90693 7.02667 7.15294 7.15656 7.23607 7.41368 7.68086 8.06223 8.12156 8.30007 8.62453 9.07796 9.74858 11.19644 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.005046 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.487776 B = 5547.326914 C = 6437.452537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.048 3.952 5 C -0.148 4.148 6 C 0.066 3.934 7 C -0.089 4.089 8 H 0.063 0.937 9 C -0.100 4.100 10 C 0.042 3.958 11 N -0.475 5.475 12 C 0.094 3.906 13 C 0.067 3.933 14 C -0.474 4.474 15 H 0.053 0.947 16 C 0.089 3.911 17 N -0.876 5.876 18 Si 0.885 3.115 19 H -0.276 1.276 20 H -0.290 1.290 21 H -0.282 1.282 22 C -0.205 4.205 23 C -0.215 4.215 24 C 0.042 3.958 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.030 0.970 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.024 0.976 41 H -0.014 1.014 42 H 0.112 0.888 43 H 0.257 0.743 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.028 0.972 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.083 -6.835 6.638 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 N -0.260 5.260 4 C -0.080 4.080 5 C -0.205 4.205 6 C -0.062 4.062 7 C -0.109 4.109 8 H 0.081 0.919 9 C -0.139 4.139 10 C -0.086 4.086 11 N -0.198 5.198 12 C -0.034 4.034 13 C 0.067 3.933 14 C -0.511 4.511 15 H 0.071 0.929 16 C -0.114 4.114 17 N -0.513 5.513 18 Si 0.714 3.286 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.208 1.208 22 C -0.244 4.244 23 C -0.253 4.253 24 C -0.087 4.087 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.043 0.957 41 H 0.004 0.996 42 H 0.129 0.871 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.047 0.953 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.951 -6.147 6.667 15.810 hybrid contribution 0.259 -0.464 0.617 0.814 sum -12.692 -6.612 7.284 16.058 Atomic orbital electron populations 1.21817 0.95205 1.01150 1.02381 1.22085 0.95756 0.89467 1.00566 1.62014 1.14625 1.15106 1.34268 1.22117 1.00359 0.95284 0.90231 1.21781 1.02986 0.94577 1.01205 1.22243 0.86453 1.01492 0.95989 1.21950 0.95569 0.98873 0.94459 0.91900 1.22362 0.96971 0.97908 0.96615 1.23179 0.89623 1.01305 0.94513 1.64668 1.03482 1.35491 1.16167 1.21879 0.95541 0.92248 0.93728 1.18889 0.95189 0.95448 0.83803 1.20224 1.28745 0.90315 1.11797 0.92907 1.24696 0.93735 0.96112 0.96828 1.69850 1.28436 1.31696 1.21314 0.86789 0.77823 0.84696 0.79326 1.20175 1.21603 1.20790 1.22947 0.93039 0.99177 1.09212 1.22927 0.93861 1.00067 1.08413 1.22833 0.93929 0.93516 0.98457 0.91807 0.92665 0.92830 0.90703 0.95435 0.90989 0.95202 0.92095 0.92041 0.92834 0.95179 0.90040 0.92390 0.91069 0.89818 0.95732 0.99563 0.87068 0.93274 0.90503 0.92126 0.91973 0.90885 0.95333 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.88 37.16 0.37 -0.96 16 2 C 0.05 0.52 5.50 -3.82 -0.02 0.50 16 3 N -0.54 -6.47 4.15 -234.62 -0.97 -7.44 16 4 C 0.05 0.52 5.55 -3.83 -0.02 0.50 16 5 C -0.15 -1.64 10.07 37.16 0.37 -1.26 16 6 C 0.07 0.90 3.90 -3.82 -0.01 0.89 16 7 C -0.09 -1.35 3.05 -89.26 -0.27 -1.62 16 8 H 0.06 0.90 6.75 -51.93 -0.35 0.55 16 9 C -0.10 -1.63 6.40 -24.88 -0.16 -1.79 16 10 C 0.04 0.81 5.07 -1.90 -0.01 0.80 16 11 N -0.48 -10.26 5.03 -230.46 -1.16 -11.42 16 12 C 0.09 2.21 4.07 -3.83 -0.02 2.20 16 13 C 0.07 1.67 1.24 -155.66 -0.19 1.48 16 14 C -0.47 -12.91 8.69 -34.44 -0.30 -13.21 16 15 H 0.05 1.46 7.84 -52.49 -0.41 1.05 16 16 C 0.09 2.43 5.26 -17.82 -0.09 2.34 16 17 N -0.88 -24.34 10.97 55.43 0.61 -23.73 16 18 Si 0.89 21.50 29.55 -169.99 -5.02 16.47 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.21 -4.79 9.96 -26.73 -0.27 -5.05 16 23 C -0.22 -4.76 8.81 -26.73 -0.24 -4.99 16 24 C 0.04 0.76 6.36 -2.76 -0.02 0.74 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.46 6.25 -51.93 -0.32 0.13 16 28 H 0.07 0.82 6.61 -51.93 -0.34 0.48 16 29 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 30 H 0.07 0.69 5.88 -51.92 -0.31 0.39 16 31 H 0.03 0.33 8.00 -51.93 -0.42 -0.09 16 32 H 0.06 0.78 6.67 -51.92 -0.35 0.43 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.03 0.40 8.00 -51.93 -0.42 -0.01 16 36 H 0.08 1.23 6.39 -51.93 -0.33 0.90 16 37 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 38 H 0.07 1.22 7.83 -51.93 -0.41 0.81 16 39 H 0.08 1.78 7.80 -51.93 -0.41 1.38 16 40 H 0.02 0.47 7.46 -51.93 -0.39 0.09 16 41 H -0.01 -0.31 7.92 -51.93 -0.41 -0.72 16 42 H 0.11 2.93 6.09 -51.92 -0.32 2.61 16 43 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 44 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 45 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 47 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 48 H 0.03 0.51 7.67 -51.93 -0.40 0.11 16 49 H 0.07 1.28 7.69 -51.93 -0.40 0.88 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -27.40 368.89 -11.17 -38.57 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -9.30 Total: 1.44 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -0.88 Total: -19.46 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -1.52 Total: -42.59 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.40 -11.17 -38.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602781042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.092 kcal (2) G-P(sol) polarization free energy of solvation -27.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds