Wall clock time and date at job start Fri Apr 10 2020 17:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.47216 * 2 1 4 4 C 1.46897 * 110.99763 * 66.04758 * 3 2 1 5 5 C 1.53001 * 109.47519 * 199.64149 * 4 3 2 6 6 C 1.46898 * 111.00034 * 190.00042 * 3 2 1 7 7 C 1.53007 * 109.47113 * 75.76675 * 6 3 2 8 8 H 1.08995 * 110.27138 * 303.48343 * 7 6 3 9 9 C 1.54595 * 110.39035 * 65.62555 * 7 6 3 10 10 C 1.54928 * 102.92172 * 140.91691 * 9 7 6 11 11 N 1.48533 * 103.22807 * 322.58651 * 10 9 7 12 12 C 1.46900 * 111.00042 * 159.72069 * 11 10 9 13 13 C 1.52997 * 109.47386 * 58.69844 * 12 11 10 14 14 C 1.50700 * 115.54949 * 54.49310 * 13 12 11 15 15 H 1.07998 * 120.00238 * 219.67064 * 14 13 12 16 16 C 1.37878 * 120.00238 * 39.94066 * 14 13 12 17 17 N 1.31518 * 119.99856 * 10.08148 * 16 14 13 18 18 Si 1.86799 * 120.00061 * 190.08283 * 16 14 13 19 19 H 1.48495 * 109.47383 * 60.00221 * 18 16 14 20 20 H 1.48504 * 109.46898 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47036 * 300.00001 * 18 16 14 22 22 C 1.52997 * 117.52196 * 200.19099 * 13 12 11 23 23 C 1.52998 * 117.49865 * 268.82398 * 13 12 11 24 24 C 1.47898 * 105.82204 * 39.20582 * 11 10 9 25 25 H 1.09001 * 109.47323 * 59.99990 * 1 2 3 26 26 H 1.09000 * 109.47062 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46866 * 299.99579 * 1 2 3 28 28 H 1.09001 * 109.46866 * 240.00421 * 2 1 3 29 29 H 1.09001 * 109.47136 * 120.00530 * 2 1 3 30 30 H 1.09009 * 109.47179 * 319.64094 * 4 3 2 31 31 H 1.09000 * 109.46913 * 79.63838 * 4 3 2 32 32 H 1.09007 * 109.46766 * 304.31623 * 5 4 3 33 33 H 1.09002 * 109.47034 * 64.30783 * 5 4 3 34 34 H 1.08993 * 109.47456 * 184.31474 * 5 4 3 35 35 H 1.09001 * 109.47226 * 315.76677 * 6 3 2 36 36 H 1.08994 * 109.47099 * 195.76463 * 6 3 2 37 37 H 1.09010 * 110.72241 * 259.27617 * 9 7 6 38 38 H 1.08998 * 110.72863 * 22.37660 * 9 7 6 39 39 H 1.08996 * 110.67177 * 204.14868 * 10 9 7 40 40 H 1.09002 * 110.66848 * 81.01997 * 10 9 7 41 41 H 1.08994 * 109.47305 * 298.69221 * 12 11 10 42 42 H 1.09007 * 109.46933 * 178.69912 * 12 11 10 43 43 H 0.97002 * 119.99883 * 184.99003 * 17 16 14 44 44 H 1.08994 * 117.50338 * 214.97283 * 22 13 12 45 45 H 1.09007 * 117.49501 * 359.97438 * 22 13 12 46 46 H 1.08997 * 117.49683 * 359.97096 * 23 13 12 47 47 H 1.08996 * 117.49624 * 144.99826 * 23 13 12 48 48 H 1.09002 * 109.92205 * 94.02149 * 24 11 10 49 49 H 1.08997 * 109.91859 * 215.12407 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 1.7402 3.5813 1.0468 6 6 3.4685 1.4311 -0.2382 7 6 3.7502 1.1742 -1.7199 8 1 3.3185 0.2216 -2.0268 9 6 3.1820 2.3237 -2.5835 10 6 4.2717 2.5133 -3.6683 11 7 5.5369 2.2971 -2.9207 12 6 6.6375 1.9621 -3.8342 13 6 6.8225 3.0941 -4.8467 14 6 7.0246 4.4664 -4.2576 15 1 6.5571 5.3252 -4.7163 16 6 7.8107 4.6264 -3.1363 17 7 8.5413 3.6249 -2.6970 18 14 7.8382 6.2656 -2.2410 19 1 6.4693 6.5950 -1.7692 20 1 8.7559 6.1784 -1.0767 21 1 8.3118 7.3268 -3.1656 22 6 7.5620 2.7671 -6.1455 23 6 6.0496 2.9974 -6.1635 24 6 5.2671 1.1838 -1.9851 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.6592 1.7870 1.5496 31 1 2.3719 1.7738 2.0342 32 1 2.7292 3.8521 0.6769 33 1 0.9854 3.8843 0.3211 34 1 1.5561 4.0862 1.9950 35 1 3.9601 0.6663 0.3631 36 1 3.8512 2.4132 0.0394 37 1 2.2336 2.0338 -3.0359 38 1 3.0633 3.2300 -1.9896 39 1 4.2349 3.5225 -4.0784 40 1 4.1606 1.7714 -4.4591 41 1 6.4033 1.0375 -4.3616 42 1 7.5567 1.8316 -3.2630 43 1 9.0378 3.7136 -1.8684 44 1 8.1947 3.5444 -6.5739 45 1 7.9174 1.7452 -6.2787 46 1 5.4096 2.1271 -6.3087 47 1 5.6873 3.9263 -6.6037 48 1 5.5714 0.2387 -2.4348 49 1 5.8090 1.3427 -1.0528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602781042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:35 Heat of formation + Delta-G solvation = 17.721946 kcal Electronic energy + Delta-G solvation = -23535.867841 eV Core-core repulsion = 20497.946780 eV Total energy + Delta-G solvation = -3037.921061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 3.77 seconds Orbital eigenvalues (eV) -40.38282 -38.94593 -37.51067 -34.00810 -33.19641 -32.65289 -30.69130 -29.32582 -27.60625 -26.59807 -24.89483 -23.91390 -22.97892 -22.08471 -21.46817 -20.79292 -20.54593 -18.09878 -17.00974 -16.73054 -16.53634 -16.06693 -15.88220 -15.45403 -15.41136 -14.85074 -14.76433 -14.54650 -14.44759 -13.68572 -13.41618 -13.15955 -13.00687 -12.96775 -12.77518 -12.70488 -12.68839 -12.45992 -12.34511 -12.28270 -12.14487 -11.92386 -11.89285 -11.80662 -11.62510 -11.37589 -11.17240 -11.02110 -10.92926 -10.43465 -9.86512 -9.19696 -8.83951 -7.93006 -5.98392 1.45697 1.48574 1.54588 2.53686 2.92641 3.14324 3.46571 3.75117 3.85510 3.93866 3.98922 4.10572 4.29172 4.32934 4.35052 4.47580 4.49798 4.52054 4.59004 4.63199 4.65434 4.74670 4.76601 4.80291 4.83600 4.87386 4.88993 4.96305 5.02529 5.04391 5.13116 5.15404 5.16509 5.19192 5.28076 5.33819 5.38367 5.40482 5.43255 5.54401 5.56193 5.69348 6.05470 6.18494 6.26755 6.40552 6.53753 6.67792 7.00401 7.63464 9.09867 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.005046 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.487776 B = 5547.326914 C = 6437.452537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 N -0.542 5.542 4 C 0.049 3.951 5 C -0.145 4.145 6 C 0.074 3.926 7 C -0.076 4.076 8 H 0.080 0.920 9 C -0.088 4.088 10 C 0.046 3.954 11 N -0.500 5.500 12 C 0.107 3.893 13 C 0.040 3.960 14 C -0.488 4.488 15 H 0.040 0.960 16 C 0.053 3.947 17 N -0.894 5.894 18 Si 0.934 3.066 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.279 1.279 22 C -0.208 4.208 23 C -0.190 4.190 24 C 0.042 3.958 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.089 0.911 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.029 0.971 41 H -0.008 1.008 42 H 0.081 0.919 43 H 0.255 0.745 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.031 0.969 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.973 -7.647 7.162 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 N -0.267 5.267 4 C -0.079 4.079 5 C -0.202 4.202 6 C -0.054 4.054 7 C -0.095 4.095 8 H 0.098 0.902 9 C -0.126 4.126 10 C -0.082 4.082 11 N -0.223 5.223 12 C -0.021 4.021 13 C 0.039 3.961 14 C -0.525 4.525 15 H 0.058 0.942 16 C -0.148 4.148 17 N -0.532 5.532 18 Si 0.762 3.238 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.205 1.205 22 C -0.246 4.246 23 C -0.227 4.227 24 C -0.086 4.086 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.010 0.990 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.050 0.950 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.850 -6.957 7.187 17.905 hybrid contribution 0.847 -0.210 0.427 0.972 sum -14.003 -7.166 7.614 17.476 Atomic orbital electron populations 1.21773 0.93826 1.02121 1.02257 1.22158 0.96841 0.88408 1.00640 1.62004 1.13181 1.16337 1.35154 1.22156 1.01280 0.94797 0.89653 1.21754 1.01485 0.95161 1.01839 1.22040 0.87868 1.00574 0.94898 1.21843 0.93136 0.99190 0.95343 0.90186 1.22249 0.96776 0.97924 0.95625 1.23090 0.89729 0.99965 0.95394 1.64532 1.03971 1.37277 1.16539 1.21569 0.95179 0.92020 0.93339 1.18978 0.97341 0.94909 0.84886 1.20406 1.28619 0.91203 1.12321 0.94190 1.25221 0.93619 0.98503 0.97474 1.69968 1.28910 1.32917 1.21387 0.86012 0.77574 0.81838 0.78411 1.20302 1.21291 1.20464 1.22940 0.93948 0.99560 1.08189 1.22875 0.93247 1.00803 1.05786 1.22836 0.96117 0.92517 0.97171 0.92518 0.91197 0.92306 0.90986 0.94993 0.89250 0.95221 0.94323 0.92322 0.91296 0.94747 0.91873 0.90372 0.92177 0.92208 0.95253 0.98963 0.90111 0.93523 0.91425 0.90919 0.90047 0.90772 0.95043 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.88 71.98 0.71 -1.42 16 2 C 0.05 0.87 5.50 86.30 0.47 1.34 16 3 N -0.54 -12.01 4.15 -896.21 -3.72 -15.73 16 4 C 0.05 0.96 5.55 86.30 0.48 1.44 16 5 C -0.14 -3.03 10.07 71.98 0.72 -2.31 16 6 C 0.07 1.95 3.90 86.31 0.34 2.28 16 7 C -0.08 -2.18 3.05 -9.91 -0.03 -2.21 16 8 H 0.08 2.07 6.75 -2.39 -0.02 2.06 16 9 C -0.09 -2.73 6.40 31.80 0.20 -2.53 16 10 C 0.05 1.76 5.07 86.65 0.44 2.20 16 11 N -0.50 -21.63 5.03 -883.06 -4.44 -26.08 16 12 C 0.11 5.09 4.07 86.30 0.35 5.44 16 13 C 0.04 1.96 1.24 -52.93 -0.07 1.90 16 14 C -0.49 -26.95 8.69 25.60 0.22 -26.73 16 15 H 0.04 2.25 7.84 -2.91 -0.02 2.22 16 16 C 0.05 2.90 5.26 84.65 0.44 3.35 16 17 N -0.89 -50.51 10.97 21.45 0.24 -50.27 16 18 Si 0.93 44.57 29.55 68.60 2.03 46.60 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 C -0.21 -9.61 9.96 30.59 0.30 -9.30 16 23 C -0.19 -8.19 8.81 30.59 0.27 -7.92 16 24 C 0.04 1.53 6.36 86.45 0.55 2.07 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.82 6.25 -2.39 -0.01 0.80 16 28 H 0.07 1.37 6.61 -2.39 -0.02 1.36 16 29 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 30 H 0.09 1.47 5.88 -2.38 -0.01 1.45 16 31 H 0.03 0.59 8.00 -2.39 -0.02 0.57 16 32 H 0.04 0.97 6.67 -2.38 -0.02 0.96 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.03 0.87 8.00 -2.39 -0.02 0.85 16 36 H 0.06 1.90 6.39 -2.39 -0.02 1.88 16 37 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.06 2.01 7.83 -2.39 -0.02 2.00 16 39 H 0.06 2.55 7.80 -2.39 -0.02 2.53 16 40 H 0.03 1.08 7.46 -2.39 -0.02 1.07 16 41 H -0.01 -0.34 7.92 -2.39 -0.02 -0.36 16 42 H 0.08 4.34 6.09 -2.38 -0.01 4.33 16 43 H 0.26 14.00 8.32 -92.71 -0.77 13.23 16 44 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 45 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 46 H 0.08 3.18 7.66 -2.39 -0.02 3.16 16 47 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 48 H 0.03 1.10 7.67 -2.39 -0.02 1.08 16 49 H 0.06 2.20 7.69 -2.39 -0.02 2.18 16 Total: -1.00 -58.22 368.89 0.40 -57.83 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.88 Total: 20.05 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 5.42 Total: -32.39 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -7.92 Total: -92.08 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -58.22 0.40 -57.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602781042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.549 kcal (2) G-P(sol) polarization free energy of solvation -58.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.77 seconds