Wall clock time and date at job start Fri Apr 10 2020 17:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34828 * 116.99736 * 2 1 4 4 O 1.21574 * 120.00423 * 359.97438 * 3 2 1 5 5 C 1.46976 * 119.99717 * 180.02562 * 3 2 1 6 6 N 1.33908 * 119.84251 * 6.34045 * 5 3 2 7 7 C 1.30666 * 120.79691 * 180.25974 * 6 5 3 8 8 C 1.41475 * 120.41528 * 359.75259 * 7 6 5 9 9 O 1.21870 * 120.16794 * 179.97438 * 8 7 6 10 10 N 1.34951 * 119.65650 * 359.97438 * 8 7 6 11 11 H 0.96998 * 120.37749 * 180.02562 * 10 8 7 12 12 C 1.36065 * 119.23159 * 0.02562 * 10 8 7 13 13 N 1.37383 * 120.20500 * 179.97438 * 12 10 8 14 14 C 1.34776 * 120.00073 * 6.80721 * 13 12 10 15 15 O 1.21245 * 120.00122 * 355.07818 * 14 13 12 16 16 C 1.50700 * 119.99765 * 174.80749 * 14 13 12 17 17 C 1.50697 * 109.47087 * 180.27715 * 16 14 13 18 18 H 1.08000 * 119.99869 * 359.97438 * 17 16 14 19 19 C 1.37884 * 120.00130 * 179.97438 * 17 16 14 20 20 N 1.31513 * 119.99819 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00005 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47245 * 120.00196 * 21 19 17 24 24 H 1.48502 * 109.47126 * 239.99977 * 21 19 17 25 25 H 1.09001 * 109.46895 * 299.99779 * 1 2 3 26 26 H 1.08997 * 109.47561 * 59.99652 * 1 2 3 27 27 H 1.09002 * 109.47313 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.78987 * 179.73506 * 7 6 5 29 29 H 0.97003 * 119.99847 * 186.81229 * 13 12 10 30 30 H 1.09001 * 109.47205 * 300.27548 * 16 14 13 31 31 H 1.09000 * 109.47513 * 60.27633 * 16 14 13 32 32 H 0.96997 * 119.99862 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2014 0.0000 4 8 1.4019 2.2210 -0.0005 5 6 3.5318 1.2783 -0.0006 6 7 4.2576 0.1603 -0.1294 7 6 5.5634 0.2065 -0.1272 8 6 6.2361 1.4439 0.0065 9 8 7.4542 1.4817 0.0084 10 7 5.5219 2.5821 0.1320 11 1 5.9724 3.4362 0.2239 12 6 4.1628 2.5175 0.1279 13 7 3.4161 3.6637 0.2549 14 6 4.0223 4.8674 0.2459 15 8 5.2323 4.9366 0.2158 16 6 3.1958 6.1274 0.2672 17 6 4.1078 7.3268 0.2449 18 1 5.1789 7.1903 0.2184 19 6 3.5750 8.5985 0.2582 20 7 2.2708 8.7646 0.2899 21 14 4.7056 10.0852 0.2314 22 1 6.1193 9.6315 0.1975 23 1 4.4188 10.9034 -0.9742 24 1 4.4776 10.9025 1.4500 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 6.1328 -0.7057 -0.2279 29 1 2.4525 3.6066 0.3510 30 1 2.5448 6.1497 -0.6068 31 1 2.5893 6.1489 1.1726 32 1 1.8960 9.6592 0.2997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203567.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:00 Heat of formation + Delta-G solvation = -95.954729 kcal Electronic energy + Delta-G solvation = -21651.618347 eV Core-core repulsion = 18000.009607 eV Total energy + Delta-G solvation = -3651.608740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.30334 -40.32284 -39.84828 -37.66920 -36.70631 -35.56091 -34.22270 -33.26032 -30.58335 -29.31345 -27.72066 -25.62702 -24.77916 -23.54244 -22.18517 -21.13993 -19.02621 -18.63406 -18.33887 -17.22343 -16.75756 -16.67750 -16.23822 -16.07369 -15.98913 -15.25936 -15.07233 -14.77248 -14.51209 -13.72131 -13.64289 -13.47133 -12.81617 -12.44119 -12.22141 -12.16664 -11.65120 -11.55453 -11.03630 -10.94512 -10.92493 -10.86740 -10.38325 -10.32505 -10.14822 -9.61926 -9.23842 -8.70700 -8.13534 -6.33105 -4.37120 0.39969 0.99600 2.07237 2.38551 2.64325 2.67716 2.94913 3.18471 3.26920 3.34174 3.58083 4.01669 4.13743 4.26281 4.58328 4.92812 4.98067 5.05705 5.06898 5.31165 5.38758 5.61839 5.78409 6.15088 6.23176 6.49070 6.71836 6.83946 7.18529 7.36339 7.61422 7.64254 7.72205 7.81843 8.08799 8.72455 9.30177 10.78389 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.004965 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.233366 B = 5637.839705 C = 7147.691502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.330 6.330 3 C 0.555 3.445 4 O -0.525 6.525 5 C -0.149 4.149 6 N -0.323 5.323 7 C -0.015 4.015 8 C 0.499 3.501 9 O -0.516 6.516 10 N -0.596 5.596 11 H 0.439 0.561 12 C 0.487 3.513 13 N -0.649 5.649 14 C 0.521 3.479 15 O -0.507 6.507 16 C 0.009 3.991 17 C -0.526 4.526 18 H 0.079 0.921 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.192 0.808 29 H 0.446 0.554 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 -15.830 -0.039 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.244 6.244 3 C 0.403 3.597 4 O -0.416 6.416 5 C -0.276 4.276 6 N -0.038 5.038 7 C -0.205 4.205 8 C 0.294 3.706 9 O -0.390 6.390 10 N -0.258 5.258 11 H 0.302 0.698 12 C 0.260 3.740 13 N -0.307 5.307 14 C 0.315 3.685 15 O -0.379 6.379 16 C -0.029 4.029 17 C -0.564 4.564 18 H 0.097 0.903 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.209 0.791 29 H 0.301 0.699 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.102 -15.861 -0.129 16.162 hybrid contribution 0.369 1.898 0.129 1.937 sum -2.733 -13.964 0.001 14.229 Atomic orbital electron populations 1.23363 0.75962 1.03866 1.02870 1.86670 1.23168 1.30893 1.83680 1.19781 0.86615 0.81733 0.71601 1.90536 1.65621 1.35444 1.49960 1.18343 0.91521 0.86497 1.31263 1.67497 1.07755 1.27765 1.00750 1.24369 0.89545 0.97228 1.09351 1.18684 0.88660 0.84921 0.78380 1.90970 1.12226 1.86166 1.49637 1.45702 1.04162 1.16983 1.58995 0.69831 1.19337 0.82730 0.88567 0.83347 1.45387 1.15356 1.03500 1.66464 1.23285 0.89540 0.85077 0.70562 1.90011 1.15760 1.84894 1.47273 1.19438 0.96136 0.86196 1.01158 1.21070 0.93892 0.88912 1.52528 0.90289 1.24999 0.95350 0.99374 0.94417 1.69945 1.10502 1.23148 1.49436 0.86287 0.80898 0.81710 0.77765 1.19360 1.20729 1.20735 0.91617 0.91588 0.87903 0.79145 0.69946 0.91451 0.91594 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 101.05 1.07 1.34 16 2 O -0.33 -3.98 10.39 -40.84 -0.42 -4.40 16 3 C 0.55 7.64 7.90 34.27 0.27 7.91 16 4 O -0.52 -7.64 13.39 -19.32 -0.26 -7.90 16 5 C -0.15 -2.15 6.74 -82.89 -0.56 -2.71 16 6 N -0.32 -4.41 10.19 -9.25 -0.09 -4.51 16 7 C -0.01 -0.19 11.19 -16.82 -0.19 -0.38 16 8 C 0.50 7.77 7.72 -14.95 -0.12 7.65 16 9 O -0.52 -9.36 17.94 5.04 0.09 -9.26 16 10 N -0.60 -9.65 5.12 -13.52 -0.07 -9.72 16 11 H 0.44 7.82 5.08 -43.65 -0.22 7.60 16 12 C 0.49 7.52 7.44 -153.14 -1.14 6.39 16 13 N -0.65 -10.45 5.15 -10.95 -0.06 -10.50 16 14 C 0.52 10.10 7.77 -10.99 -0.09 10.01 16 15 O -0.51 -10.70 12.29 5.59 0.07 -10.63 16 16 C 0.01 0.21 5.46 -29.04 -0.16 0.05 16 17 C -0.53 -13.68 8.92 -34.44 -0.31 -13.99 16 18 H 0.08 2.12 6.75 -52.49 -0.35 1.76 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -24.20 13.29 55.43 0.74 -23.46 16 21 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.19 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.45 6.76 5.20 -41.11 -0.21 6.55 16 30 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -29.50 291.88 -4.40 -33.90 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -2.46 Total: 8.71 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: -1.31 Total: 17.81 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.52 Total: -48.19 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.52 Total: -32.20 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.50 -4.40 -33.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203567.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.054 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds