Wall clock time and date at job start Fri Apr 10 2020 17:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00254 * 2 1 4 4 C 1.46900 * 111.00483 * 123.95422 * 2 1 3 5 5 H 1.08997 * 109.53193 * 300.10250 * 4 2 1 6 6 C 1.53123 * 109.48930 * 60.19939 * 4 2 1 7 7 C 1.53127 * 109.15019 * 177.60800 * 6 4 2 8 8 C 1.53042 * 109.27596 * 302.34079 * 7 6 4 9 9 N 1.46843 * 109.52278 * 59.17923 * 8 7 6 10 10 C 1.46895 * 110.99970 * 174.15687 * 9 8 7 11 11 C 1.53004 * 109.47145 * 59.21210 * 10 9 8 12 12 C 1.52993 * 109.47367 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.47421 * 59.99529 * 12 11 10 14 14 C 1.50699 * 109.46624 * 60.00148 * 13 12 11 15 15 H 1.07998 * 119.99925 * 240.00090 * 14 13 12 16 16 C 1.37875 * 120.00324 * 59.99922 * 14 13 12 17 17 N 1.31523 * 119.99906 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00342 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47064 * 60.00509 * 18 16 14 20 20 H 1.48503 * 109.47465 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47374 * 300.00123 * 18 16 14 22 22 C 1.52995 * 109.47141 * 300.00455 * 13 12 11 23 23 C 1.52995 * 109.47405 * 299.21070 * 10 9 8 24 24 C 1.46847 * 111.20124 * 298.25596 * 9 8 7 25 25 H 1.09001 * 109.46866 * 296.04916 * 1 2 3 26 26 H 1.08997 * 109.47171 * 56.04152 * 1 2 3 27 27 H 1.08996 * 109.47341 * 176.04786 * 1 2 3 28 28 H 1.08993 * 109.47331 * 183.95675 * 3 2 1 29 29 H 1.09006 * 109.47048 * 303.95588 * 3 2 1 30 30 H 1.08997 * 109.47035 * 63.95542 * 3 2 1 31 31 H 1.09003 * 109.53012 * 57.70373 * 6 4 2 32 32 H 1.08997 * 109.57453 * 297.53650 * 6 4 2 33 33 H 1.08997 * 109.49981 * 182.39822 * 7 6 4 34 34 H 1.08999 * 109.50124 * 62.28085 * 7 6 4 35 35 H 1.08993 * 109.46299 * 299.16259 * 8 7 6 36 36 H 1.09000 * 109.45057 * 179.19029 * 8 7 6 37 37 H 1.09001 * 109.47345 * 179.20731 * 10 9 8 38 38 H 1.09001 * 109.46608 * 299.99972 * 11 10 9 39 39 H 1.08999 * 109.46866 * 59.99680 * 11 10 9 40 40 H 1.09000 * 109.47364 * 300.00248 * 12 11 10 41 41 H 1.08996 * 109.47136 * 179.97438 * 12 11 10 42 42 H 1.08994 * 109.47028 * 179.97438 * 13 12 11 43 43 H 0.96996 * 119.99612 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.47257 * 299.99566 * 22 13 12 45 45 H 1.09004 * 109.47193 * 179.97438 * 22 13 12 46 46 H 1.09006 * 109.47147 * 299.99988 * 23 10 9 47 47 H 1.09001 * 109.47145 * 59.99539 * 23 10 9 48 48 H 1.09002 * 109.46481 * 181.76055 * 24 9 8 49 49 H 1.08994 * 109.46283 * 301.73908 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6452 -0.3220 2.0693 6 6 1.5089 -2.2150 1.0468 7 6 2.1103 -3.0201 2.2022 8 6 3.6368 -2.9324 2.1383 9 7 4.0519 -1.5268 2.2294 10 6 5.5142 -1.4139 2.3107 11 6 6.1445 -2.0488 1.0694 12 6 7.6676 -1.9319 1.1543 13 6 8.1659 -2.6562 2.4066 14 6 7.7770 -4.1104 2.3338 15 1 7.1437 -4.5388 3.0965 16 6 8.2297 -4.8938 1.2935 17 7 9.0013 -4.3722 0.3649 18 14 7.7483 -6.6965 1.2037 19 1 6.2700 -6.8105 1.1216 20 1 8.3604 -7.3129 -0.0008 21 1 8.2323 -7.3993 2.4190 22 6 7.5356 -2.0213 3.6477 23 6 6.0129 -2.1379 3.5628 24 6 3.5253 -0.7437 1.1043 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0827 1.3432 -0.0709 29 1 1.5898 1.9164 -0.8525 30 1 1.7045 1.8723 0.9233 31 1 1.8261 -2.6472 0.0977 32 1 0.4212 -2.2398 1.1130 33 1 1.8017 -4.0621 2.1189 34 1 1.7616 -2.6115 3.1507 35 1 3.9857 -3.3538 1.1956 36 1 4.0676 -3.4928 2.9681 37 1 5.7951 -0.3620 2.3630 38 1 5.8636 -3.1007 1.0171 39 1 5.7893 -1.5331 0.1774 40 1 7.9489 -0.8801 1.2070 41 1 8.1166 -2.3846 0.2703 42 1 9.2510 -2.5732 2.4668 43 1 9.3195 -4.9233 -0.3671 44 1 7.8168 -0.9695 3.7004 45 1 7.8902 -2.5376 4.5399 46 1 5.5639 -1.6855 4.4471 47 1 5.7320 -3.1898 3.5105 48 1 3.8753 0.2856 1.1829 49 1 3.8745 -1.1753 0.1664 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173334944.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:09 Heat of formation + Delta-G solvation = -5.905094 kcal Electronic energy + Delta-G solvation = -24138.158000 eV Core-core repulsion = 21099.212394 eV Total energy + Delta-G solvation = -3038.945606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.76707 -37.82755 -35.70541 -33.06611 -31.71088 -29.95994 -29.44559 -28.31696 -27.47223 -24.78670 -24.42234 -23.19487 -21.75920 -21.47210 -20.04891 -19.30936 -18.27319 -16.32908 -15.69905 -15.27883 -14.91618 -14.72396 -14.61403 -14.25857 -14.04250 -13.78614 -13.38341 -13.20912 -12.80072 -12.72993 -12.48127 -12.28192 -11.95326 -11.75451 -11.40611 -11.38446 -11.21028 -11.09653 -10.94052 -10.83454 -10.71070 -10.56441 -10.46318 -10.15304 -9.96578 -9.79687 -9.65681 -9.11685 -8.88949 -8.61011 -8.40082 -8.25437 -7.64424 -5.92938 -3.97186 3.32421 3.37982 3.40128 3.75889 4.44932 4.47300 4.80291 5.00052 5.06256 5.24558 5.26523 5.34939 5.37450 5.43675 5.52099 5.57136 5.65276 5.66764 5.75050 5.81489 5.87226 5.89454 6.03040 6.05187 6.10031 6.17222 6.22021 6.33920 6.37439 6.47703 6.55217 6.58689 6.60191 6.80440 6.81918 6.91726 6.95656 7.00194 7.15378 7.21886 7.44798 7.55725 7.61332 7.70129 7.79689 7.99708 8.20641 8.53367 9.05062 9.65665 11.12813 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.005044 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.369452 B = 5549.614796 C = 5957.180974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.021 3.979 4 C 0.090 3.910 5 H 0.046 0.954 6 C -0.112 4.112 7 C -0.115 4.115 8 C 0.049 3.951 9 N -0.534 5.534 10 C 0.093 3.907 11 C -0.129 4.129 12 C -0.104 4.104 13 C 0.044 3.956 14 C -0.499 4.499 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.882 3.118 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.106 4.106 23 C -0.097 4.097 24 C 0.061 3.939 25 H 0.023 0.977 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.030 0.970 40 H 0.012 0.988 41 H 0.089 0.911 42 H 0.023 0.977 43 H 0.258 0.742 44 H 0.032 0.968 45 H 0.046 0.954 46 H 0.042 0.958 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.651 7.969 0.868 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.127 4.127 4 C -0.019 4.019 5 H 0.064 0.936 6 C -0.150 4.150 7 C -0.153 4.153 8 C -0.079 4.079 9 N -0.258 5.258 10 C -0.014 4.014 11 C -0.168 4.168 12 C -0.142 4.142 13 C 0.025 3.975 14 C -0.537 4.537 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.710 3.290 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.144 4.144 23 C -0.135 4.135 24 C -0.067 4.067 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.030 0.970 41 H 0.107 0.893 42 H 0.041 0.959 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.604 7.889 0.704 16.614 hybrid contribution -0.192 -0.905 -0.232 0.954 sum -14.796 6.984 0.472 16.368 Atomic orbital electron populations 1.22392 0.87654 1.02256 1.00098 1.61971 1.07586 1.13693 1.43643 1.22428 1.01385 0.88742 1.00119 1.21647 0.95176 0.93995 0.91036 0.93605 1.21658 0.99518 0.94347 0.99502 1.21591 0.95818 0.99476 0.98453 1.22145 0.94288 0.89739 1.01729 1.62194 1.11687 1.10188 1.41725 1.21693 0.84218 0.99026 0.96509 1.21982 0.98292 1.01368 0.95135 1.21448 0.93248 0.95946 1.03565 1.18683 0.95223 0.94171 0.89388 1.21099 1.30087 0.94204 1.08360 0.92847 1.24926 0.95238 0.97760 0.95972 1.69862 1.34775 1.35564 1.12845 0.86825 0.78730 0.86116 0.77342 1.20389 1.21455 1.20393 1.21539 0.94572 0.98147 1.00184 1.21456 0.96167 1.00735 0.95097 1.22046 0.92873 0.98268 0.93537 0.95893 0.91660 0.91135 0.90838 0.91669 0.95732 0.91376 0.92318 0.91616 0.91627 0.94061 0.90005 0.91683 0.90761 0.95124 0.96952 0.89300 0.95909 0.93171 0.94888 0.93494 0.93904 0.91075 0.91354 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.22 60.06 0.55 0.79 16 2 N -0.54 -6.52 4.89 -243.09 -1.19 -7.70 16 3 C 0.02 0.23 9.11 60.07 0.55 0.77 16 4 C 0.09 1.17 2.10 -67.63 -0.14 1.03 16 5 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 6 C -0.11 -1.41 4.97 -26.60 -0.13 -1.54 16 7 C -0.11 -1.51 6.09 -26.64 -0.16 -1.67 16 8 C 0.05 0.79 4.63 -3.83 -0.02 0.77 16 9 N -0.53 -8.71 4.64 -226.70 -1.05 -9.77 16 10 C 0.09 1.71 2.23 -67.72 -0.15 1.55 16 11 C -0.13 -2.69 4.29 -26.73 -0.11 -2.81 16 12 C -0.10 -2.42 5.24 -26.73 -0.14 -2.56 16 13 C 0.04 1.07 2.59 -91.77 -0.24 0.83 16 14 C -0.50 -13.12 6.61 -34.44 -0.23 -13.35 16 15 H 0.05 1.39 6.71 -52.49 -0.35 1.04 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 18 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.11 -2.20 5.41 -26.76 -0.14 -2.34 16 23 C -0.10 -1.84 4.78 -26.76 -0.13 -1.97 16 24 C 0.06 0.92 3.92 -3.84 -0.02 0.90 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 27 H 0.07 0.66 6.37 -51.93 -0.33 0.33 16 28 H 0.07 0.82 6.26 -51.93 -0.32 0.49 16 29 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.64 6.55 -51.93 -0.34 0.30 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.74 6.62 -51.93 -0.34 0.40 16 36 H 0.08 1.39 6.03 -51.93 -0.31 1.08 16 37 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 38 H 0.07 1.73 5.60 -51.93 -0.29 1.44 16 39 H 0.03 0.61 6.65 -51.93 -0.35 0.27 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 1.45 4.77 -51.93 -0.25 1.20 16 48 H 0.07 1.00 6.33 -51.93 -0.33 0.67 16 49 H 0.05 0.76 6.73 -51.93 -0.35 0.41 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -27.03 345.07 -10.97 -38.00 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.93 Total: 0.77 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -0.61 Total: -18.02 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -1.61 Total: -42.02 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.03 -10.97 -38.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334944.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.100 kcal (2) G-P(sol) polarization free energy of solvation -27.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds