Wall clock time and date at job start Fri Apr 10 2020 17:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00254 * 2 1 4 4 C 1.46900 * 111.00483 * 123.95422 * 2 1 3 5 5 H 1.08997 * 109.53193 * 300.10250 * 4 2 1 6 6 C 1.53123 * 109.48930 * 60.19939 * 4 2 1 7 7 C 1.53127 * 109.15019 * 177.60800 * 6 4 2 8 8 C 1.53042 * 109.27596 * 302.34079 * 7 6 4 9 9 N 1.46843 * 109.52278 * 59.17923 * 8 7 6 10 10 C 1.46895 * 110.99970 * 174.15687 * 9 8 7 11 11 C 1.53004 * 109.47145 * 59.21210 * 10 9 8 12 12 C 1.52993 * 109.47367 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.47421 * 59.99529 * 12 11 10 14 14 C 1.50699 * 109.46624 * 60.00148 * 13 12 11 15 15 H 1.07998 * 119.99925 * 240.00090 * 14 13 12 16 16 C 1.37875 * 120.00324 * 59.99922 * 14 13 12 17 17 N 1.31523 * 119.99906 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00342 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47064 * 60.00509 * 18 16 14 20 20 H 1.48503 * 109.47465 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47374 * 300.00123 * 18 16 14 22 22 C 1.52995 * 109.47141 * 300.00455 * 13 12 11 23 23 C 1.52995 * 109.47405 * 299.21070 * 10 9 8 24 24 C 1.46847 * 111.20124 * 298.25596 * 9 8 7 25 25 H 1.09001 * 109.46866 * 296.04916 * 1 2 3 26 26 H 1.08997 * 109.47171 * 56.04152 * 1 2 3 27 27 H 1.08996 * 109.47341 * 176.04786 * 1 2 3 28 28 H 1.08993 * 109.47331 * 183.95675 * 3 2 1 29 29 H 1.09006 * 109.47048 * 303.95588 * 3 2 1 30 30 H 1.08997 * 109.47035 * 63.95542 * 3 2 1 31 31 H 1.09003 * 109.53012 * 57.70373 * 6 4 2 32 32 H 1.08997 * 109.57453 * 297.53650 * 6 4 2 33 33 H 1.08997 * 109.49981 * 182.39822 * 7 6 4 34 34 H 1.08999 * 109.50124 * 62.28085 * 7 6 4 35 35 H 1.08993 * 109.46299 * 299.16259 * 8 7 6 36 36 H 1.09000 * 109.45057 * 179.19029 * 8 7 6 37 37 H 1.09001 * 109.47345 * 179.20731 * 10 9 8 38 38 H 1.09001 * 109.46608 * 299.99972 * 11 10 9 39 39 H 1.08999 * 109.46866 * 59.99680 * 11 10 9 40 40 H 1.09000 * 109.47364 * 300.00248 * 12 11 10 41 41 H 1.08996 * 109.47136 * 179.97438 * 12 11 10 42 42 H 1.08994 * 109.47028 * 179.97438 * 13 12 11 43 43 H 0.96996 * 119.99612 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.47257 * 299.99566 * 22 13 12 45 45 H 1.09004 * 109.47193 * 179.97438 * 22 13 12 46 46 H 1.09006 * 109.47147 * 299.99988 * 23 10 9 47 47 H 1.09001 * 109.47145 * 59.99539 * 23 10 9 48 48 H 1.09002 * 109.46481 * 181.76055 * 24 9 8 49 49 H 1.08994 * 109.46283 * 301.73908 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6452 -0.3220 2.0693 6 6 1.5089 -2.2150 1.0468 7 6 2.1103 -3.0201 2.2022 8 6 3.6368 -2.9324 2.1383 9 7 4.0519 -1.5268 2.2294 10 6 5.5142 -1.4139 2.3107 11 6 6.1445 -2.0488 1.0694 12 6 7.6676 -1.9319 1.1543 13 6 8.1659 -2.6562 2.4066 14 6 7.7770 -4.1104 2.3338 15 1 7.1437 -4.5388 3.0965 16 6 8.2297 -4.8938 1.2935 17 7 9.0013 -4.3722 0.3649 18 14 7.7483 -6.6965 1.2037 19 1 6.2700 -6.8105 1.1216 20 1 8.3604 -7.3129 -0.0008 21 1 8.2323 -7.3993 2.4190 22 6 7.5356 -2.0213 3.6477 23 6 6.0129 -2.1379 3.5628 24 6 3.5253 -0.7437 1.1043 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0827 1.3432 -0.0709 29 1 1.5898 1.9164 -0.8525 30 1 1.7045 1.8723 0.9233 31 1 1.8261 -2.6472 0.0977 32 1 0.4212 -2.2398 1.1130 33 1 1.8017 -4.0621 2.1189 34 1 1.7616 -2.6115 3.1507 35 1 3.9857 -3.3538 1.1956 36 1 4.0676 -3.4928 2.9681 37 1 5.7951 -0.3620 2.3630 38 1 5.8636 -3.1007 1.0171 39 1 5.7893 -1.5331 0.1774 40 1 7.9489 -0.8801 1.2070 41 1 8.1166 -2.3846 0.2703 42 1 9.2510 -2.5732 2.4668 43 1 9.3195 -4.9233 -0.3671 44 1 7.8168 -0.9695 3.7004 45 1 7.8902 -2.5376 4.5399 46 1 5.5639 -1.6855 4.4471 47 1 5.7320 -3.1898 3.5105 48 1 3.8753 0.2856 1.1829 49 1 3.8745 -1.1753 0.1664 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173334944.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:08 Heat of formation + Delta-G solvation = -21.805240 kcal Electronic energy + Delta-G solvation = -24138.847483 eV Core-core repulsion = 21099.212394 eV Total energy + Delta-G solvation = -3039.635088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 280.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06801 -39.17131 -37.02869 -34.65374 -33.36072 -31.39106 -30.93625 -29.72526 -28.50878 -26.71453 -25.47324 -24.52734 -23.18133 -22.83595 -21.55486 -20.61218 -19.91224 -17.70409 -17.48772 -16.67710 -16.33742 -15.89567 -15.82424 -15.61272 -15.30899 -15.16046 -14.88912 -14.58688 -14.48203 -13.87436 -13.73462 -13.45891 -13.19652 -13.12606 -12.95187 -12.83102 -12.66045 -12.48610 -12.46759 -12.32708 -12.28671 -12.08235 -11.90416 -11.62526 -11.48717 -11.29596 -11.15402 -10.85760 -10.70291 -10.50438 -10.30810 -9.27615 -9.09029 -8.02245 -6.12043 1.40341 1.40910 1.47340 2.45170 2.74003 3.25858 3.27654 3.74669 3.93945 4.00769 4.11162 4.20782 4.29701 4.33099 4.41927 4.45128 4.50976 4.57584 4.65898 4.69371 4.71466 4.76641 4.76827 4.81949 4.89216 4.90188 4.98173 5.00904 5.02333 5.03371 5.06669 5.11507 5.14963 5.20795 5.29757 5.41473 5.46113 5.54678 5.64851 5.66759 5.73494 5.94517 6.04101 6.13760 6.22908 6.25305 6.34367 6.47464 6.97825 7.53584 9.02202 Molecular weight = 280.22amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.005044 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.369452 B = 5549.614796 C = 5957.180974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.560 5.560 3 C 0.021 3.979 4 C 0.098 3.902 5 H 0.047 0.953 6 C -0.108 4.108 7 C -0.108 4.108 8 C 0.049 3.951 9 N -0.526 5.526 10 C 0.101 3.899 11 C -0.115 4.115 12 C -0.099 4.099 13 C 0.039 3.961 14 C -0.502 4.502 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.920 5.920 18 Si 0.936 3.064 19 H -0.272 1.272 20 H -0.290 1.290 21 H -0.272 1.272 22 C -0.101 4.101 23 C -0.089 4.089 24 C 0.064 3.936 25 H 0.029 0.971 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.015 0.985 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.033 0.967 40 H 0.025 0.975 41 H 0.053 0.947 42 H -0.012 1.012 43 H 0.256 0.744 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.139 8.651 1.785 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.285 5.285 3 C -0.126 4.126 4 C -0.011 4.011 5 H 0.065 0.935 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.079 4.079 9 N -0.249 5.249 10 C -0.007 4.007 11 C -0.154 4.154 12 C -0.138 4.138 13 C 0.021 3.979 14 C -0.540 4.540 15 H 0.071 0.929 16 C -0.183 4.183 17 N -0.561 5.561 18 Si 0.763 3.237 19 H -0.197 1.197 20 H -0.216 1.216 21 H -0.197 1.197 22 C -0.139 4.139 23 C -0.127 4.127 24 C -0.065 4.065 25 H 0.047 0.953 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.033 0.967 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.006 0.994 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.092 0.908 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -17.110 8.574 1.631 19.207 hybrid contribution 0.616 -1.079 -0.545 1.357 sum -16.493 7.495 1.086 18.149 Atomic orbital electron populations 1.22444 0.86072 1.02835 1.00984 1.61970 1.09099 1.14337 1.43056 1.22443 1.00824 0.88322 1.01059 1.21511 0.93407 0.94559 0.91597 0.93524 1.21630 1.00818 0.93769 0.98411 1.21552 0.93208 1.00591 0.99236 1.22153 0.96607 0.89268 0.99887 1.62242 1.10002 1.10429 1.42214 1.21556 0.85526 0.98958 0.94668 1.21799 0.96550 1.00012 0.96991 1.21308 0.94828 0.96091 1.01535 1.18681 0.93417 0.94064 0.91788 1.21355 1.29401 0.95272 1.07972 0.92862 1.25602 0.95446 1.01418 0.95881 1.70015 1.35987 1.36688 1.13361 0.85938 0.78606 0.81863 0.77276 1.19740 1.21606 1.19727 1.21444 0.95576 0.98777 0.98078 1.21362 0.94879 1.00094 0.96331 1.22069 0.94622 0.97952 0.91819 0.95260 0.90430 0.90800 0.91860 0.90236 0.95179 0.92829 0.90048 0.90377 0.90595 0.96659 0.91015 0.90757 0.93474 0.94827 0.95671 0.92869 0.99424 0.93532 0.93139 0.93324 0.91509 0.92660 0.90798 0.95877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.22 127.69 1.18 1.58 16 2 N -0.56 -12.17 4.89 -922.99 -4.51 -16.68 16 3 C 0.02 0.41 9.11 127.69 1.16 1.57 16 4 C 0.10 2.34 2.10 44.97 0.09 2.43 16 5 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 6 C -0.11 -2.48 4.97 30.68 0.15 -2.33 16 7 C -0.11 -2.60 6.09 30.65 0.19 -2.41 16 8 C 0.05 1.54 4.63 86.33 0.40 1.94 16 9 N -0.53 -16.44 4.64 -871.15 -4.04 -20.48 16 10 C 0.10 3.60 2.23 44.92 0.10 3.70 16 11 C -0.11 -4.85 4.29 30.59 0.13 -4.71 16 12 C -0.10 -4.73 5.24 30.59 0.16 -4.57 16 13 C 0.04 1.94 2.59 -11.54 -0.03 1.91 16 14 C -0.50 -26.85 6.61 25.60 0.17 -26.68 16 15 H 0.05 2.80 6.71 -2.91 -0.02 2.78 16 16 C 0.01 0.78 5.30 84.65 0.45 1.23 16 17 N -0.92 -53.71 11.32 21.45 0.24 -53.47 16 18 Si 0.94 43.85 29.54 68.60 2.03 45.88 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 C -0.10 -4.07 5.41 30.58 0.17 -3.91 16 23 C -0.09 -3.26 4.78 30.58 0.15 -3.11 16 24 C 0.06 1.83 3.92 86.32 0.34 2.17 16 25 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 27 H 0.07 1.16 6.37 -2.39 -0.02 1.15 16 28 H 0.06 1.32 6.26 -2.39 -0.01 1.30 16 29 H 0.08 1.27 8.12 -2.38 -0.02 1.25 16 30 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.52 6.55 -2.39 -0.02 1.50 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 35 H 0.02 0.56 6.62 -2.39 -0.02 0.54 16 36 H 0.07 2.40 6.03 -2.39 -0.01 2.38 16 37 H 0.07 2.55 8.08 -2.39 -0.02 2.53 16 38 H 0.05 2.25 5.60 -2.39 -0.01 2.24 16 39 H 0.03 1.37 6.65 -2.39 -0.02 1.35 16 40 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.05 2.93 6.07 -2.39 -0.01 2.92 16 42 H -0.01 -0.70 8.14 -2.39 -0.02 -0.71 16 43 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 45 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.05 2.21 4.77 -2.39 -0.01 2.20 16 48 H 0.07 2.04 6.33 -2.39 -0.02 2.02 16 49 H 0.02 0.77 6.73 -2.39 -0.02 0.75 16 Total: -1.00 -58.86 345.07 -0.59 -59.44 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.90 Total: 16.50 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 4.80 Total: -31.19 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -8.31 Total: -90.63 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -58.86 -0.59 -59.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173334944.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.639 kcal (2) G-P(sol) polarization free energy of solvation -58.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds