Wall clock time and date at job start Fri Apr 10 2020 17:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34943 * 125.66798 * 2 1 4 4 N 1.37193 * 107.15546 * 180.02562 * 3 2 1 5 5 C 1.37147 * 106.98179 * 0.25433 * 4 3 2 6 6 C 1.40786 * 119.69778 * 180.35755 * 5 4 3 7 7 C 1.36268 * 119.50136 * 359.70081 * 6 5 4 8 8 C 1.39975 * 119.77924 * 0.02562 * 7 6 5 9 9 C 1.36156 * 120.19054 * 0.02562 * 8 7 6 10 10 N 1.38285 * 119.77980 * 179.97438 * 9 8 7 11 11 S 1.65594 * 120.00346 * 0.02562 * 10 9 8 12 12 O 1.42092 * 106.40549 * 178.53973 * 11 10 9 13 13 O 1.42104 * 106.40212 * 311.46044 * 11 10 9 14 14 C 1.76197 * 107.21938 * 64.99653 * 11 10 9 15 15 H 1.07998 * 120.00185 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00474 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99350 * 0.02562 * 16 14 11 18 18 Si 1.86791 * 120.00608 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47294 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47640 * 119.99583 * 18 16 14 21 21 H 1.48506 * 109.47083 * 240.00149 * 18 16 14 22 22 N 1.32620 * 107.98446 * 0.12656 * 5 4 3 23 23 H 1.09004 * 109.47274 * 89.99965 * 1 2 3 24 24 H 1.08997 * 109.47705 * 209.99990 * 1 2 3 25 25 H 1.08999 * 109.47024 * 330.00236 * 1 2 3 26 26 H 1.07998 * 126.42008 * 0.02562 * 3 2 1 27 27 H 1.08003 * 120.24936 * 179.72821 * 6 5 4 28 28 H 1.07997 * 120.11140 * 180.02562 * 7 6 5 29 29 H 1.07997 * 119.90204 * 180.02562 * 8 7 6 30 30 H 0.97005 * 119.99744 * 180.02562 * 10 9 8 31 31 H 0.97004 * 119.99966 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2938 1.0963 0.0000 4 7 3.5947 0.6607 -0.0006 5 6 3.5581 -0.7103 -0.0068 6 6 4.7619 -1.4402 -0.0011 7 6 5.9506 -0.7740 0.0042 8 6 5.9631 0.6257 0.0046 9 6 4.7923 1.3209 0.0002 10 7 4.8146 2.7035 0.0011 11 16 6.2617 3.5084 0.0070 12 8 5.9503 4.8943 -0.0281 13 8 7.0473 2.9140 1.0311 14 6 7.0690 3.1412 -1.5156 15 1 6.5933 2.4927 -2.2363 16 6 8.3080 3.6818 -1.7870 17 7 8.8875 4.4712 -0.9090 18 14 9.1634 3.2932 -3.4013 19 1 8.3079 2.3875 -4.2095 20 1 9.3996 4.5523 -4.1522 21 1 10.4633 2.6300 -3.1256 22 7 2.2862 -1.0859 -0.0125 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.9616 2.1239 0.0004 27 1 4.7434 -2.5201 -0.0015 28 1 6.8800 -1.3241 0.0081 29 1 6.9040 1.1557 0.0084 30 1 3.9824 3.2020 -0.0017 31 1 9.7590 4.8519 -1.1000 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192928578.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:27 Heat of formation + Delta-G solvation = -23.534569 kcal Electronic energy + Delta-G solvation = -19822.342850 eV Core-core repulsion = 16616.627355 eV Total energy + Delta-G solvation = -3205.715496 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.85716 -39.32688 -37.69438 -36.48466 -36.33025 -35.27314 -33.98556 -32.11294 -29.53917 -28.38513 -28.15796 -24.16861 -23.84603 -21.67940 -21.15861 -19.85779 -19.65680 -18.59679 -17.88223 -17.24898 -16.98342 -16.83165 -16.22506 -16.09088 -15.82588 -15.02712 -14.50174 -14.09616 -14.01016 -13.65741 -13.53719 -13.36662 -13.23737 -13.05039 -12.93290 -12.90335 -12.75869 -12.36686 -12.28268 -12.02453 -11.52675 -11.30579 -11.20966 -11.00942 -9.60584 -8.86930 -8.50119 -7.60368 -0.24277 -0.14337 0.27305 1.33177 1.34192 1.44186 1.54462 1.78825 2.14847 2.39512 2.51473 2.55006 3.23372 3.38271 3.52935 3.69071 3.91510 4.10051 4.27870 4.31786 4.47837 4.61299 4.81586 4.87373 4.99766 5.03050 5.12892 5.19992 5.35183 5.52724 5.58746 5.74757 5.79315 6.05826 6.68699 6.83156 8.12485 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.024737 B = 0.005876 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.631402 B = 4763.902419 C = 5167.614801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.053 3.947 3 C -0.132 4.132 4 N -0.380 5.380 5 C 0.235 3.765 6 C -0.132 4.132 7 C -0.041 4.041 8 C -0.232 4.232 9 C 0.355 3.645 10 N -1.047 6.047 11 S 2.710 3.290 12 O -1.019 7.019 13 O -1.008 7.008 14 C -1.025 5.025 15 H 0.122 0.878 16 C 0.080 3.920 17 N -0.885 5.885 18 Si 0.993 3.007 19 H -0.250 1.250 20 H -0.261 1.261 21 H -0.254 1.254 22 N -0.525 5.525 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.201 0.799 27 H 0.180 0.820 28 H 0.183 0.817 29 H 0.159 0.841 30 H 0.428 0.572 31 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 -8.714 -1.653 12.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 C -0.260 4.260 4 N -0.058 5.058 5 C -0.009 4.009 6 C -0.153 4.153 7 C -0.065 4.065 8 C -0.258 4.258 9 C 0.152 3.848 10 N -0.790 5.790 11 S 2.812 3.188 12 O -1.009 7.009 13 O -0.998 6.998 14 C -1.159 5.159 15 H 0.140 0.860 16 C -0.135 4.135 17 N -0.516 5.516 18 Si 0.811 3.189 19 H -0.174 1.174 20 H -0.186 1.186 21 H -0.178 1.178 22 N -0.247 5.247 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.113 0.887 26 H 0.218 0.782 27 H 0.198 0.802 28 H 0.200 0.800 29 H 0.176 0.824 30 H 0.263 0.737 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.624 -8.743 -0.817 12.308 hybrid contribution 0.406 1.319 -0.922 1.660 sum -8.218 -7.424 -1.739 11.211 Atomic orbital electron populations 1.20252 0.84042 1.04250 1.03805 1.21519 0.98458 0.87324 1.00566 1.22893 0.80112 1.02588 1.20410 1.43085 1.05053 1.09459 1.48162 1.21536 0.95477 0.79239 1.04598 1.20496 0.86645 1.01652 1.06533 1.21124 0.99863 0.91271 0.94258 1.21248 0.95738 0.97573 1.11277 1.17122 0.85451 0.81957 1.00302 1.53849 1.28515 1.10798 1.85805 1.00772 0.70207 0.71054 0.76793 1.93367 1.83890 1.33942 1.89730 1.93372 1.67179 1.78047 1.61152 1.30552 1.15521 1.44204 1.25671 0.85970 1.25915 0.95683 0.89642 1.02258 1.69955 1.17971 1.26592 1.37079 0.85049 0.78517 0.79637 0.75735 1.17351 1.18563 1.17770 1.70741 0.98240 1.29709 1.26007 0.89594 0.90490 0.88719 0.78235 0.80229 0.79969 0.82364 0.73660 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.41 71.23 0.74 -0.48 16 2 C 0.05 1.51 7.06 41.52 0.29 1.80 16 3 C -0.13 -3.91 11.17 83.10 0.93 -2.98 16 4 N -0.38 -13.21 2.97 -349.69 -1.04 -14.25 16 5 C 0.23 7.94 7.81 134.03 1.05 8.99 16 6 C -0.13 -3.70 10.10 22.43 0.23 -3.47 16 7 C -0.04 -1.18 10.05 22.23 0.22 -0.96 16 8 C -0.23 -8.74 8.40 22.21 0.19 -8.55 16 9 C 0.35 13.52 7.49 131.25 0.98 14.50 16 10 N -1.05 -41.15 5.83 -55.21 -0.32 -41.47 16 11 S 2.71 135.71 4.56 -56.49 -0.26 135.45 16 12 O -1.02 -56.86 18.02 -128.00 -2.31 -59.17 16 13 O -1.01 -54.89 15.60 -128.00 -2.00 -56.88 16 14 C -1.02 -51.74 8.32 67.73 0.56 -51.18 16 15 H 0.12 5.67 7.81 -2.91 -0.02 5.65 16 16 C 0.08 4.07 5.46 84.65 0.46 4.53 16 17 N -0.89 -48.59 13.19 21.45 0.28 -48.30 16 18 Si 0.99 38.13 29.54 68.60 2.03 40.16 16 19 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 H -0.25 -9.10 7.11 99.48 0.71 -8.40 16 22 N -0.52 -17.49 11.32 -182.46 -2.07 -19.55 16 23 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.20 4.54 7.79 -2.91 -0.02 4.52 16 27 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 28 H 0.18 3.76 8.06 -2.91 -0.02 3.73 16 29 H 0.16 6.77 4.58 -2.91 -0.01 6.75 16 30 H 0.43 14.07 8.16 -96.74 -0.79 13.28 16 31 H 0.30 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -72.17 285.81 0.38 -71.80 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.40 Total: 30.02 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 5.65 Total: -37.79 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -3.14 Total: -123.57 kcal Atomic # 8 Polarization: -111.75 SS G_CDS: -4.30 Total: -116.05 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Atomic # 16 Polarization: 135.71 SS G_CDS: -0.26 Total: 135.45 kcal Total: -72.17 0.38 -71.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192928578.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.261 kcal (2) G-P(sol) polarization free energy of solvation -72.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds