Wall clock time and date at job start Fri Apr 10 2020 17:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00004 * 2 1 4 4 H 1.48502 * 109.47366 * 269.99986 * 3 2 1 5 5 H 1.48504 * 109.47266 * 29.99800 * 3 2 1 6 6 H 1.48501 * 109.47229 * 149.99711 * 3 2 1 7 7 C 1.37883 * 119.99569 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99435 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00216 * 0.02562 * 7 2 1 10 10 O 1.42096 * 106.40159 * 66.46253 * 9 7 2 11 11 O 1.42102 * 106.40127 * 293.54111 * 9 7 2 12 12 N 1.65598 * 107.21395 * 179.97438 * 9 7 2 13 13 C 1.46507 * 119.99995 * 65.00413 * 12 9 7 14 14 C 1.50698 * 109.47176 * 164.99567 * 13 12 9 15 15 C 1.35103 * 126.41166 * 95.02478 * 14 13 12 16 16 N 1.33511 * 108.62776 * 179.97438 * 15 14 13 17 17 C 1.32557 * 109.15902 * 359.97438 * 16 15 14 18 18 C 1.40941 * 132.32577 * 179.97438 * 17 16 15 19 19 C 1.36025 * 119.32638 * 180.02562 * 18 17 16 20 20 C 1.40476 * 119.69121 * 359.97438 * 19 18 17 21 21 C 1.34950 * 120.30003 * 0.21238 * 20 19 18 22 22 N 1.36480 * 120.61464 * 359.57565 * 21 20 19 23 23 H 0.97000 * 120.00450 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00052 * 244.99748 * 12 9 7 25 25 H 1.09008 * 109.47033 * 44.99597 * 13 12 9 26 26 H 1.08994 * 109.46887 * 284.99457 * 13 12 9 27 27 H 1.08000 * 125.68139 * 359.94132 * 15 14 13 28 28 H 1.08001 * 120.33739 * 0.02562 * 18 17 16 29 29 H 1.07997 * 120.15407 * 179.97438 * 19 18 17 30 30 H 1.08000 * 119.84351 * 180.02562 * 20 19 18 31 31 H 1.08009 * 119.69185 * 179.70690 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1234 -2.7201 0.0005 10 8 0.4519 -2.7956 -1.2494 11 8 0.4508 -2.7950 1.2500 12 7 2.2482 -3.9354 0.0005 13 6 3.1393 -4.1089 1.1505 14 6 3.7946 -5.4640 1.0783 15 6 5.0075 -5.7412 0.5516 16 7 5.2364 -7.0508 0.6744 17 6 4.1974 -7.6203 1.2687 18 6 3.9263 -8.9546 1.6329 19 6 2.7484 -9.2520 2.2448 20 6 1.8217 -8.2288 2.5049 21 6 2.0939 -6.9565 2.1469 22 7 3.2736 -6.6435 1.5362 23 1 -0.4851 0.8400 -0.0004 24 1 2.3171 -4.5325 -0.7608 25 1 2.5621 -4.0330 2.0721 26 1 3.9053 -3.3337 1.1367 27 1 5.6795 -5.0232 0.1053 28 1 4.6465 -9.7330 1.4283 29 1 2.5267 -10.2700 2.5292 30 1 0.8859 -8.4622 2.9909 31 1 1.3722 -6.1783 2.3474 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192933170.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:32 Heat of formation + Delta-G solvation = -30.991513 kcal Electronic energy + Delta-G solvation = -19351.918225 eV Core-core repulsion = 16145.879372 eV Total energy + Delta-G solvation = -3206.038853 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.82954 -38.38002 -37.46491 -36.38429 -36.17027 -35.16886 -34.31686 -31.24745 -30.18850 -28.25798 -26.54364 -24.53704 -23.38922 -22.16120 -21.06425 -19.44420 -18.70995 -18.07336 -17.74934 -17.17795 -17.03533 -16.63585 -16.42543 -16.00549 -15.65370 -15.34964 -14.64873 -14.42776 -14.19267 -13.96237 -13.32615 -13.19258 -13.00496 -12.88844 -12.75418 -12.54761 -12.46811 -12.39925 -12.28475 -11.91457 -11.24273 -11.20689 -11.01954 -10.32835 -9.84086 -8.83243 -8.75056 -7.48591 -0.16817 0.09926 0.44739 1.36531 1.36835 1.52939 1.59263 1.80576 2.22508 2.57296 2.58869 3.00551 3.25132 3.53637 3.63374 3.70689 3.96471 4.04132 4.15472 4.27568 4.48167 4.53705 4.65157 4.71275 4.98190 5.03424 5.17632 5.24673 5.29818 5.58195 5.61449 5.90550 6.06219 6.22486 6.78884 6.79644 8.20991 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.032168 B = 0.004691 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.230873 B = 5967.603279 C = 6452.893058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.244 1.244 7 C -1.039 5.039 8 H 0.126 0.874 9 S 2.722 3.278 10 O -1.045 7.045 11 O -1.039 7.039 12 N -1.120 6.120 13 C 0.206 3.794 14 C -0.092 4.092 15 C 0.049 3.951 16 N -0.528 5.528 17 C 0.207 3.793 18 C -0.102 4.102 19 C -0.079 4.079 20 C -0.130 4.130 21 C 0.027 3.973 22 N -0.360 5.360 23 H 0.299 0.701 24 H 0.412 0.588 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.203 0.797 28 H 0.170 0.830 29 H 0.186 0.814 30 H 0.185 0.815 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.523 -14.447 5.943 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.167 1.167 7 C -1.173 5.173 8 H 0.144 0.856 9 S 2.823 3.177 10 O -1.036 7.036 11 O -1.029 7.029 12 N -0.879 5.879 13 C 0.079 3.921 14 C -0.206 4.206 15 C -0.104 4.104 16 N -0.249 5.249 17 C -0.036 4.036 18 C -0.122 4.122 19 C -0.102 4.102 20 C -0.150 4.150 21 C -0.095 4.095 22 N -0.031 5.031 23 H 0.109 0.891 24 H 0.245 0.755 25 H 0.092 0.908 26 H 0.126 0.874 27 H 0.220 0.780 28 H 0.188 0.812 29 H 0.203 0.797 30 H 0.203 0.797 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.062 -14.722 5.861 17.348 hybrid contribution -0.157 1.527 -0.274 1.560 sum 6.905 -13.194 5.587 15.905 Atomic orbital electron populations 1.69988 1.08815 1.32364 1.41428 1.26017 0.95350 1.05409 0.87499 0.85115 0.79276 0.74759 0.79956 1.18145 1.18889 1.16720 1.30899 1.07470 1.12225 1.66692 0.85605 0.99866 0.72464 0.73884 0.71499 1.93318 1.74875 1.88366 1.47010 1.93301 1.74362 1.88218 1.46995 1.55589 1.54968 1.49897 1.27455 1.19466 0.93185 0.91042 0.88401 1.21197 0.98490 0.87568 1.13330 1.22755 0.94802 0.92989 0.99899 1.70751 1.24502 1.07723 1.21889 1.21641 0.87139 0.92396 1.02411 1.20684 1.00106 0.90738 1.00641 1.21580 0.91391 1.01738 0.95526 1.21378 1.02748 0.89847 1.01017 1.22163 0.87685 1.00611 0.99059 1.42854 1.14174 1.08813 1.37303 0.89116 0.75476 0.90821 0.87425 0.77996 0.81227 0.79674 0.79733 0.82210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.55 13.19 21.45 0.28 -52.26 16 2 C 0.07 3.82 5.46 84.66 0.46 4.28 16 3 Si 0.99 40.27 29.54 68.60 2.03 42.30 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.24 -9.14 7.11 99.48 0.71 -8.44 16 7 C -1.04 -55.30 9.72 67.74 0.66 -54.64 16 8 H 0.13 5.90 7.81 -2.91 -0.02 5.88 16 9 S 2.72 142.34 5.02 -56.49 -0.28 142.06 16 10 O -1.05 -62.13 18.02 -128.00 -2.31 -64.44 16 11 O -1.04 -59.52 17.49 -128.00 -2.24 -61.76 16 12 N -1.12 -43.56 5.99 -190.78 -1.14 -44.70 16 13 C 0.21 6.80 6.65 85.63 0.57 7.37 16 14 C -0.09 -2.81 6.43 41.06 0.26 -2.55 16 15 C 0.05 1.41 11.75 83.72 0.98 2.40 16 16 N -0.53 -16.44 11.32 -194.34 -2.20 -18.63 16 17 C 0.21 5.81 7.81 134.11 1.05 6.86 16 18 C -0.10 -1.95 10.11 22.42 0.23 -1.72 16 19 C -0.08 -1.06 10.07 22.30 0.22 -0.83 16 20 C -0.13 -2.08 9.99 22.06 0.22 -1.86 16 21 C 0.03 0.65 10.85 83.21 0.90 1.56 16 22 N -0.36 -10.40 2.94 -338.87 -1.00 -11.40 16 23 H 0.30 15.76 8.31 -92.71 -0.77 14.99 16 24 H 0.41 14.74 8.64 -96.75 -0.84 13.91 16 25 H 0.07 2.53 7.75 -2.38 -0.02 2.51 16 26 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.20 4.69 8.06 -2.91 -0.02 4.67 16 28 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.19 0.88 8.06 -2.91 -0.02 0.85 16 30 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 31 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -80.34 294.60 -0.96 -81.31 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.34 Total: 26.68 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 5.56 Total: -39.15 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -4.06 Total: -127.00 kcal Atomic # 8 Polarization: -121.66 SS G_CDS: -4.55 Total: -126.20 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: 142.34 SS G_CDS: -0.28 Total: 142.06 kcal Total: -80.34 -0.96 -81.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933170.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.316 kcal (2) G-P(sol) polarization free energy of solvation -80.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds