Wall clock time and date at job start Fri Apr 10 2020 17:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35156 * 125.70454 * 2 1 4 4 N 1.36783 * 107.17068 * 179.84351 * 3 2 1 5 5 C 1.36731 * 132.52958 * 180.11577 * 4 3 2 6 6 C 1.34914 * 120.74293 * 180.37264 * 5 4 3 7 7 C 1.40422 * 120.36597 * 359.95686 * 6 5 4 8 8 C 1.36627 * 119.62573 * 0.02562 * 7 6 5 9 9 N 1.39660 * 120.39545 * 180.02562 * 8 7 6 10 10 S 1.65600 * 119.99551 * 326.91715 * 9 8 7 11 11 O 1.42099 * 106.40091 * 181.16213 * 10 9 8 12 12 O 1.42102 * 106.40492 * 314.08210 * 10 9 8 13 13 C 1.76201 * 107.22006 * 67.62342 * 10 9 8 14 14 H 1.08002 * 120.00109 * 359.97438 * 13 10 9 15 15 C 1.37881 * 120.00105 * 180.02562 * 13 10 9 16 16 N 1.31517 * 120.00028 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99825 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.47108 * 90.00191 * 17 15 13 19 19 H 1.48502 * 109.47063 * 209.99821 * 17 15 13 20 20 H 1.48495 * 109.47474 * 329.99684 * 17 15 13 21 21 C 1.36926 * 107.00690 * 0.41151 * 4 3 2 22 22 N 1.32521 * 108.08630 * 359.74080 * 21 4 3 23 23 H 1.08996 * 109.47364 * 269.71559 * 1 2 3 24 24 H 1.09007 * 109.47022 * 149.71725 * 1 2 3 25 25 H 1.08997 * 109.47321 * 29.71798 * 1 2 3 26 26 H 1.08005 * 126.41719 * 359.97438 * 3 2 1 27 27 H 1.07999 * 119.62757 * 0.35474 * 5 4 3 28 28 H 1.07991 * 119.81680 * 179.97438 * 6 5 4 29 29 H 1.07995 * 120.18619 * 180.02562 * 7 6 5 30 30 H 0.96994 * 120.00235 * 146.91369 * 9 8 7 31 31 H 0.96989 * 120.00002 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2958 1.0975 0.0000 4 7 3.5927 0.6627 0.0036 5 6 4.7893 1.3243 0.0072 6 6 5.9539 0.6432 0.0028 7 6 5.9550 -0.7610 -0.0048 8 6 4.7679 -1.4373 -0.0081 9 7 4.7502 -2.8338 -0.0151 10 16 5.9414 -3.6729 -0.8021 11 8 5.6291 -5.0508 -0.6499 12 8 6.1032 -3.0479 -2.0680 13 6 7.4414 -3.4021 0.0818 14 1 7.4436 -2.7780 0.9633 15 6 8.6125 -3.9860 -0.3524 16 7 8.6099 -4.7455 -1.4261 17 14 10.2029 -3.6983 0.5843 18 1 10.3594 -4.7441 1.6269 19 1 11.3500 -3.7618 -0.3566 20 1 10.1636 -2.3603 1.2272 21 6 3.5562 -0.7060 -0.0037 22 7 2.2860 -1.0837 -0.0057 23 1 -0.3634 -0.0051 1.0276 24 1 -0.3633 -0.8875 -0.5183 25 1 -0.3634 0.8925 -0.5094 26 1 1.9642 2.1254 -0.0004 27 1 4.8023 2.4042 0.0134 28 1 6.8904 1.1809 0.0053 29 1 6.8889 -1.3032 -0.0079 30 1 4.0404 -3.3121 0.4411 31 1 9.4338 -5.1560 -1.7318 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192934751.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:35 Heat of formation + Delta-G solvation = -2.335326 kcal Electronic energy + Delta-G solvation = -19739.482230 eV Core-core repulsion = 16534.686002 eV Total energy + Delta-G solvation = -3204.796227 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.57494 -37.63738 -35.53385 -35.19129 -34.14762 -33.26864 -31.96996 -31.01647 -28.07258 -27.21755 -26.27411 -22.80659 -22.48296 -20.42241 -19.18899 -18.13098 -17.75408 -16.79959 -16.09217 -15.77270 -15.63874 -15.34065 -14.76431 -14.14904 -13.93189 -13.65485 -13.22057 -12.94159 -12.66074 -12.23871 -12.20331 -12.00604 -11.62447 -11.29656 -11.23083 -11.05375 -10.71077 -10.60777 -10.45899 -10.36169 -9.88783 -9.58489 -9.35466 -8.91549 -8.33628 -7.26482 -6.82957 -5.48632 1.10040 1.52626 1.99814 2.83860 3.00494 3.01090 3.08157 3.12991 3.79227 3.94778 4.30341 4.38533 4.51302 4.72658 4.86482 5.18086 5.29725 5.38908 5.48086 5.62400 5.66036 5.76331 5.92040 6.01877 6.22688 6.30337 6.41194 6.66324 6.79143 6.90564 7.18718 7.27799 7.63404 7.79051 8.09803 8.73125 10.11028 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.005816 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.536053 B = 4813.150124 C = 5504.625822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.048 3.952 3 C -0.106 4.106 4 N -0.343 5.343 5 C -0.002 4.002 6 C -0.087 4.087 7 C -0.184 4.184 8 C 0.240 3.760 9 N -1.053 6.053 10 S 2.700 3.300 11 O -0.991 6.991 12 O -0.987 6.987 13 C -1.023 5.023 14 H 0.112 0.888 15 C 0.134 3.866 16 N -0.839 5.839 17 Si 0.924 3.076 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.260 1.260 21 C 0.213 3.787 22 N -0.487 5.487 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.179 0.821 27 H 0.160 0.840 28 H 0.154 0.846 29 H 0.178 0.822 30 H 0.420 0.580 31 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 13.175 4.840 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 C -0.238 4.238 4 N -0.014 5.014 5 C -0.124 4.124 6 C -0.108 4.108 7 C -0.212 4.212 8 C 0.138 3.862 9 N -0.792 5.792 10 S 2.800 3.200 11 O -0.982 6.982 12 O -0.977 6.977 13 C -1.156 5.156 14 H 0.130 0.870 15 C -0.085 4.085 16 N -0.467 5.467 17 Si 0.748 3.252 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.184 1.184 21 C -0.034 4.034 22 N -0.208 5.208 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.196 0.804 27 H 0.177 0.823 28 H 0.172 0.828 29 H 0.195 0.805 30 H 0.254 0.746 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.108 11.762 3.801 14.259 hybrid contribution 1.122 1.027 1.056 1.852 sum -5.987 12.789 4.857 14.933 Atomic orbital electron populations 1.20078 0.87173 1.02903 1.02404 1.20859 0.96686 0.88134 1.03001 1.22283 0.80789 1.00720 1.19992 1.42543 1.06132 1.07962 1.44731 1.21422 0.82855 0.98324 1.09834 1.20616 0.97193 0.93769 0.99231 1.21785 0.98996 0.94987 1.05448 1.16097 0.89141 0.83610 0.97387 1.54241 1.45267 1.10623 1.69074 1.01208 0.73423 0.71755 0.73590 1.93405 1.85253 1.32574 1.86950 1.93412 1.86116 1.77141 1.41028 1.30525 1.13055 1.44325 1.27691 0.87012 1.24767 1.00493 0.90158 0.93094 1.69886 1.31500 1.25126 1.20234 0.86097 0.79448 0.79982 0.79721 1.19079 1.19880 1.18371 1.20634 0.93703 0.80910 1.08147 1.70543 0.98066 1.29394 1.22815 0.91087 0.90832 0.91131 0.80387 0.82279 0.82815 0.80491 0.74609 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.42 36.01 0.38 -0.34 16 2 C 0.05 0.72 7.06 -82.98 -0.59 0.14 16 3 C -0.11 -1.43 11.66 -16.44 -0.19 -1.62 16 4 N -0.34 -5.43 2.95 -62.48 -0.18 -5.61 16 5 C 0.00 -0.03 10.95 -16.55 -0.18 -0.21 16 6 C -0.09 -1.23 9.98 -39.94 -0.40 -1.63 16 7 C -0.18 -3.44 8.98 -39.34 -0.35 -3.79 16 8 C 0.24 4.91 6.22 -83.62 -0.52 4.39 16 9 N -1.05 -22.91 5.82 32.50 0.19 -22.72 16 10 S 2.70 71.41 4.63 -107.50 -0.50 70.91 16 11 O -0.99 -28.95 18.02 -57.17 -1.03 -29.98 16 12 O -0.99 -28.66 17.45 -57.17 -1.00 -29.65 16 13 C -1.02 -26.44 7.61 30.60 0.23 -26.21 16 14 H 0.11 2.57 6.89 -52.49 -0.36 2.21 16 15 C 0.13 3.53 5.46 -17.82 -0.10 3.44 16 16 N -0.84 -23.63 13.19 55.43 0.73 -22.90 16 17 Si 0.92 19.30 29.54 -169.99 -5.02 14.28 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 C 0.21 4.11 7.75 -155.99 -1.21 2.90 16 22 N -0.49 -9.28 11.31 -8.89 -0.10 -9.38 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.18 1.63 8.06 -52.48 -0.42 1.21 16 27 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.18 3.54 4.48 -52.49 -0.24 3.30 16 30 H 0.42 8.27 8.95 -34.47 -0.31 7.96 16 31 H 0.29 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 287.54 15.07 4.33 4.33 Total: -1.00 -35.85 287.54 -8.08 -43.93 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -2.58 Total: 9.73 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -2.93 Total: -22.94 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.64 Total: -60.61 kcal Atomic # 8 Polarization: -57.60 SS G_CDS: -2.03 Total: -59.63 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: 71.41 SS G_CDS: -0.50 Total: 70.91 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -35.85 -8.08 -43.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192934751.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.594 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds