Wall clock time and date at job start Fri Apr 10 2020 17:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35156 * 125.70454 * 2 1 4 4 N 1.36783 * 107.17068 * 179.84351 * 3 2 1 5 5 C 1.36731 * 132.52958 * 180.11577 * 4 3 2 6 6 C 1.34914 * 120.74293 * 180.37264 * 5 4 3 7 7 C 1.40422 * 120.36597 * 359.95686 * 6 5 4 8 8 C 1.36627 * 119.62573 * 0.02562 * 7 6 5 9 9 N 1.39660 * 120.39545 * 180.02562 * 8 7 6 10 10 S 1.65600 * 119.99551 * 326.91715 * 9 8 7 11 11 O 1.42099 * 106.40091 * 181.16213 * 10 9 8 12 12 O 1.42102 * 106.40492 * 314.08210 * 10 9 8 13 13 C 1.76201 * 107.22006 * 67.62342 * 10 9 8 14 14 H 1.08002 * 120.00109 * 359.97438 * 13 10 9 15 15 C 1.37881 * 120.00105 * 180.02562 * 13 10 9 16 16 N 1.31517 * 120.00028 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99825 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.47108 * 90.00191 * 17 15 13 19 19 H 1.48502 * 109.47063 * 209.99821 * 17 15 13 20 20 H 1.48495 * 109.47474 * 329.99684 * 17 15 13 21 21 C 1.36926 * 107.00690 * 0.41151 * 4 3 2 22 22 N 1.32521 * 108.08630 * 359.74080 * 21 4 3 23 23 H 1.08996 * 109.47364 * 269.71559 * 1 2 3 24 24 H 1.09007 * 109.47022 * 149.71725 * 1 2 3 25 25 H 1.08997 * 109.47321 * 29.71798 * 1 2 3 26 26 H 1.08005 * 126.41719 * 359.97438 * 3 2 1 27 27 H 1.07999 * 119.62757 * 0.35474 * 5 4 3 28 28 H 1.07991 * 119.81680 * 179.97438 * 6 5 4 29 29 H 1.07995 * 120.18619 * 180.02562 * 7 6 5 30 30 H 0.96994 * 120.00235 * 146.91369 * 9 8 7 31 31 H 0.96989 * 120.00002 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2958 1.0975 0.0000 4 7 3.5927 0.6627 0.0036 5 6 4.7893 1.3243 0.0072 6 6 5.9539 0.6432 0.0028 7 6 5.9550 -0.7610 -0.0048 8 6 4.7679 -1.4373 -0.0081 9 7 4.7502 -2.8338 -0.0151 10 16 5.9414 -3.6729 -0.8021 11 8 5.6291 -5.0508 -0.6499 12 8 6.1032 -3.0479 -2.0680 13 6 7.4414 -3.4021 0.0818 14 1 7.4436 -2.7780 0.9633 15 6 8.6125 -3.9860 -0.3524 16 7 8.6099 -4.7455 -1.4261 17 14 10.2029 -3.6983 0.5843 18 1 10.3594 -4.7441 1.6269 19 1 11.3500 -3.7618 -0.3566 20 1 10.1636 -2.3603 1.2272 21 6 3.5562 -0.7060 -0.0037 22 7 2.2860 -1.0837 -0.0057 23 1 -0.3634 -0.0051 1.0276 24 1 -0.3633 -0.8875 -0.5183 25 1 -0.3634 0.8925 -0.5094 26 1 1.9642 2.1254 -0.0004 27 1 4.8023 2.4042 0.0134 28 1 6.8904 1.1809 0.0053 29 1 6.8889 -1.3032 -0.0079 30 1 4.0404 -3.3121 0.4411 31 1 9.4338 -5.1560 -1.7318 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192934751.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:34 Heat of formation + Delta-G solvation = -30.413458 kcal Electronic energy + Delta-G solvation = -19740.699789 eV Core-core repulsion = 16534.686002 eV Total energy + Delta-G solvation = -3206.013787 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.75724 -38.94696 -37.56030 -36.70416 -36.33338 -35.26974 -33.17312 -32.20209 -29.39121 -28.57826 -27.96241 -24.09077 -23.72849 -21.56509 -21.09452 -19.70360 -19.38040 -18.59114 -17.44813 -17.35306 -17.01611 -16.86371 -16.16239 -15.98068 -15.70635 -14.99429 -14.17562 -14.04739 -14.01009 -13.78794 -13.69218 -13.17235 -13.07330 -12.97506 -12.91567 -12.67775 -12.59852 -12.37901 -12.32914 -12.21698 -11.25794 -11.16443 -11.08628 -10.78776 -9.49521 -8.81519 -8.52923 -7.56006 -0.17973 0.08934 0.31098 1.38098 1.38862 1.56190 1.71373 1.91715 2.20373 2.50370 2.55257 2.66999 3.13823 3.53185 3.61940 3.85318 4.05132 4.11573 4.28538 4.39916 4.45408 4.72204 4.89000 4.93951 5.01242 5.08101 5.19381 5.20154 5.25633 5.60698 5.72224 5.83163 6.01732 6.18660 6.70708 6.92008 8.17760 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.005816 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.536053 B = 4813.150124 C = 5504.625822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.023 3.977 3 C -0.084 4.084 4 N -0.349 5.349 5 C 0.025 3.975 6 C -0.104 4.104 7 C -0.188 4.188 8 C 0.190 3.810 9 N -1.049 6.049 10 S 2.704 3.296 11 O -1.035 7.035 12 O -1.026 7.026 13 C -1.027 5.027 14 H 0.135 0.865 15 C 0.073 3.927 16 N -0.891 5.891 17 Si 0.998 3.002 18 H -0.259 1.259 19 H -0.263 1.263 20 H -0.236 1.236 21 C 0.178 3.822 22 N -0.529 5.529 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.232 0.768 27 H 0.219 0.781 28 H 0.196 0.804 29 H 0.158 0.842 30 H 0.423 0.577 31 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.517 17.303 6.263 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.215 4.215 4 N -0.021 5.021 5 C -0.096 4.096 6 C -0.124 4.124 7 C -0.216 4.216 8 C 0.089 3.911 9 N -0.793 5.793 10 S 2.807 3.193 11 O -1.025 7.025 12 O -1.016 7.016 13 C -1.161 5.161 14 H 0.153 0.847 15 C -0.141 4.141 16 N -0.522 5.522 17 Si 0.815 3.185 18 H -0.183 1.183 19 H -0.187 1.187 20 H -0.158 1.158 21 C -0.068 4.068 22 N -0.252 5.252 23 H 0.103 0.897 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.248 0.752 27 H 0.236 0.764 28 H 0.213 0.787 29 H 0.176 0.824 30 H 0.258 0.742 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.817 15.910 5.213 18.077 hybrid contribution 0.856 -0.098 0.616 1.059 sum -5.961 15.812 5.829 17.875 Atomic orbital electron populations 1.20214 0.84440 1.03945 1.03594 1.21714 0.98636 0.87831 1.02889 1.23158 0.79384 1.02443 1.16515 1.42914 1.07838 1.06853 1.44466 1.22386 0.81321 1.00689 1.05163 1.21065 0.99795 0.91664 0.99916 1.21946 0.97544 0.97472 1.04652 1.16370 0.90789 0.82541 1.01352 1.53497 1.44479 1.11908 1.69371 1.00712 0.74189 0.70931 0.73495 1.93333 1.86157 1.35426 1.87574 1.93342 1.86963 1.77545 1.43712 1.30716 1.12538 1.44661 1.28217 0.84716 1.26101 1.04840 0.89284 0.93859 1.69994 1.33129 1.26676 1.22356 0.85020 0.74048 0.81115 0.78341 1.18328 1.18749 1.15826 1.20487 0.93332 0.82689 1.10297 1.70488 0.98840 1.31882 1.23974 0.89712 0.92081 0.87819 0.75175 0.76432 0.78710 0.82430 0.74219 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.21 10.42 71.24 0.74 -0.47 16 2 C 0.02 0.64 7.06 41.60 0.29 0.93 16 3 C -0.08 -1.93 11.66 83.21 0.97 -0.96 16 4 N -0.35 -10.03 2.95 -351.59 -1.04 -11.06 16 5 C 0.03 0.54 10.95 83.16 0.91 1.46 16 6 C -0.10 -2.63 9.98 22.04 0.22 -2.41 16 7 C -0.19 -7.03 8.98 22.42 0.20 -6.83 16 8 C 0.19 8.02 6.22 38.33 0.24 8.26 16 9 N -1.05 -48.65 5.82 -51.10 -0.30 -48.95 16 10 S 2.70 151.34 4.63 -56.49 -0.26 151.08 16 11 O -1.03 -64.36 18.02 -128.00 -2.31 -66.67 16 12 O -1.03 -63.11 17.45 -128.00 -2.23 -65.34 16 13 C -1.03 -54.44 7.61 67.74 0.52 -53.92 16 14 H 0.14 6.27 6.89 -2.91 -0.02 6.25 16 15 C 0.07 3.89 5.46 84.66 0.46 4.35 16 16 N -0.89 -51.84 13.19 21.45 0.28 -51.56 16 17 Si 1.00 38.79 29.54 68.60 2.03 40.82 16 18 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 19 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 20 H -0.24 -8.18 7.11 99.48 0.71 -7.47 16 21 C 0.18 6.89 7.75 134.32 1.04 7.93 16 22 N -0.53 -20.41 11.31 -182.05 -2.06 -22.47 16 23 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.23 2.65 8.06 -2.91 -0.02 2.62 16 27 H 0.22 2.08 8.06 -2.91 -0.02 2.05 16 28 H 0.20 3.14 8.06 -2.92 -0.02 3.12 16 29 H 0.16 6.43 4.48 -2.91 -0.01 6.41 16 30 H 0.42 18.19 8.95 -96.75 -0.87 17.32 16 31 H 0.30 15.68 8.31 -92.72 -0.77 14.91 16 Total: -1.00 -84.79 287.54 0.03 -84.75 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.32 Total: 31.05 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 5.59 Total: -41.66 kcal Atomic # 7 Polarization: -130.93 SS G_CDS: -3.11 Total: -134.04 kcal Atomic # 8 Polarization: -127.47 SS G_CDS: -4.54 Total: -132.01 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Atomic # 16 Polarization: 151.34 SS G_CDS: -0.26 Total: 151.08 kcal Total: -84.79 0.03 -84.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192934751.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.341 kcal (2) G-P(sol) polarization free energy of solvation -84.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds