Wall clock time and date at job start Fri Apr 10 2020 17:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36544 * 126.37302 * 2 1 4 4 N 1.37898 * 125.06510 * 359.93775 * 3 2 1 5 5 S 1.65596 * 120.00252 * 194.99870 * 4 3 2 6 6 O 1.42096 * 106.40099 * 311.46500 * 5 4 3 7 7 O 1.42099 * 106.40170 * 178.54232 * 5 4 3 8 8 C 1.76199 * 107.21576 * 65.00458 * 5 4 3 9 9 H 1.08009 * 120.00150 * 359.72175 * 8 5 4 10 10 C 1.37876 * 120.00184 * 179.97438 * 8 5 4 11 11 N 1.31514 * 119.99769 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00300 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.47118 * 89.99790 * 12 10 8 14 14 H 1.48499 * 109.47134 * 210.00310 * 12 10 8 15 15 H 1.48498 * 109.47011 * 329.99931 * 12 10 8 16 16 N 1.30973 * 109.87050 * 180.20984 * 3 2 1 17 17 C 1.35909 * 109.61999 * 359.62089 * 16 3 2 18 18 C 1.39698 * 133.39758 * 180.10899 * 17 16 3 19 19 C 1.37691 * 119.78065 * 180.32936 * 18 17 16 20 20 C 1.38699 * 120.49185 * 359.95747 * 19 18 17 21 21 C 1.37966 * 120.43661 * 0.02562 * 20 19 18 22 22 C 1.38535 * 126.37696 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46778 * 90.02843 * 1 2 3 24 24 H 1.09006 * 109.46930 * 210.02216 * 1 2 3 25 25 H 1.08993 * 109.47373 * 330.02811 * 1 2 3 26 26 H 0.97001 * 119.99253 * 15.00418 * 4 3 2 27 27 H 0.97005 * 120.00032 * 179.97438 * 11 10 8 28 28 H 1.08007 * 120.11266 * 0.33032 * 18 17 16 29 29 H 1.07997 * 119.75499 * 179.97438 * 19 18 17 30 30 H 1.08003 * 119.78701 * 180.02562 * 20 19 18 31 31 H 1.07998 * 120.07573 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2748 1.0994 0.0000 4 7 1.8358 2.4067 -0.0012 5 16 2.8857 3.6323 -0.3722 6 8 4.0520 3.4118 0.4089 7 8 2.1318 4.8358 -0.3207 8 6 3.3651 3.4172 -2.0540 9 1 2.9736 2.5884 -2.6254 10 6 4.2442 4.3037 -2.6391 11 7 4.7252 5.3096 -1.9418 12 14 4.7519 4.0760 -4.4223 13 1 3.8105 4.8131 -5.3030 14 1 6.1268 4.6025 -4.6166 15 1 4.7221 2.6314 -4.7649 16 7 3.5306 0.7274 -0.0045 17 6 3.6045 -0.6297 0.0008 18 6 4.6703 -1.5329 0.0013 19 6 4.4194 -2.8867 0.0007 20 6 3.1160 -3.3609 0.0004 21 6 2.0525 -2.4821 0.0002 22 6 2.2867 -1.1154 0.0005 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 0.9120 2.6082 0.2153 27 1 5.3439 5.9332 -2.3533 28 1 5.6877 -1.1704 0.0023 29 1 5.2436 -3.5846 0.0007 30 1 2.9322 -4.4252 0.0004 31 1 1.0399 -2.8577 -0.0004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935159.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:36 Heat of formation + Delta-G solvation = -32.986374 kcal Electronic energy + Delta-G solvation = -19815.049952 eV Core-core repulsion = 16608.924595 eV Total energy + Delta-G solvation = -3206.125357 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.07586 -38.53703 -37.54703 -36.29504 -35.75268 -35.21311 -35.10156 -31.28220 -29.50015 -28.32945 -27.82917 -23.87019 -23.26550 -21.77572 -21.09119 -19.65937 -19.18127 -18.34605 -17.85753 -17.26496 -17.17420 -16.73615 -16.00670 -15.78940 -15.35697 -14.91569 -14.83435 -14.24093 -14.06052 -13.53770 -13.51336 -13.38406 -13.06933 -13.01381 -12.72914 -12.60823 -12.49670 -12.35783 -12.26425 -11.65854 -11.30107 -11.27069 -10.96382 -10.76241 -9.10459 -8.89182 -8.76338 -7.52218 -0.13775 0.10903 0.62482 1.27386 1.31372 1.46141 1.57822 1.81934 2.16984 2.43465 2.54148 2.99682 3.38842 3.51071 3.80622 3.83137 4.19110 4.28183 4.31968 4.43275 4.51828 4.58791 4.61912 4.81174 4.92955 5.18303 5.21324 5.49066 5.56227 5.65536 5.71078 5.80359 6.06146 6.29975 6.72428 6.95380 8.17068 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.020092 B = 0.006505 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.226740 B = 4303.343222 C = 4938.753427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.500 5.500 3 C 0.515 3.485 4 N -1.014 6.014 5 S 2.719 3.281 6 O -1.002 7.002 7 O -1.018 7.018 8 C -1.020 5.020 9 H 0.107 0.893 10 C 0.074 3.926 11 N -0.890 5.890 12 Si 0.991 3.009 13 H -0.246 1.246 14 H -0.258 1.258 15 H -0.259 1.259 16 N -0.551 5.551 17 C 0.024 3.976 18 C -0.101 4.101 19 C -0.114 4.114 20 C -0.103 4.103 21 C -0.101 4.101 22 C 0.033 3.967 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.096 0.904 26 H 0.437 0.563 27 H 0.301 0.699 28 H 0.119 0.881 29 H 0.160 0.840 30 H 0.172 0.828 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.134 -17.970 0.774 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.198 5.198 3 C 0.158 3.842 4 N -0.765 5.765 5 S 2.819 3.181 6 O -0.992 6.992 7 O -1.008 7.008 8 C -1.154 5.154 9 H 0.125 0.875 10 C -0.139 4.139 11 N -0.521 5.521 12 Si 0.808 3.192 13 H -0.170 1.170 14 H -0.182 1.182 15 H -0.183 1.183 16 N -0.279 5.279 17 C -0.094 4.094 18 C -0.121 4.121 19 C -0.134 4.134 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.075 4.075 23 H 0.108 0.892 24 H 0.137 0.863 25 H 0.114 0.886 26 H 0.275 0.725 27 H 0.112 0.888 28 H 0.137 0.863 29 H 0.178 0.822 30 H 0.190 0.810 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.105 -16.549 1.426 18.482 hybrid contribution -0.703 0.197 -0.915 1.171 sum -8.808 -16.352 0.511 18.581 Atomic orbital electron populations 1.22414 0.73300 1.06633 1.05222 1.45289 1.08322 1.02957 1.63204 1.19029 0.85786 0.81822 0.97610 1.52970 1.27572 1.13777 1.82213 1.00395 0.71237 0.69750 0.76682 1.93375 1.48277 1.84369 1.73137 1.93371 1.73359 1.44111 1.89935 1.30500 1.40981 1.22247 1.21721 0.87510 1.25939 0.91051 0.91062 1.05847 1.69954 1.27904 1.13596 1.40639 0.85133 0.79085 0.79990 0.74943 1.16953 1.18169 1.18311 1.70913 1.15260 1.13373 1.28377 1.19458 0.94871 0.88779 1.06266 1.20531 0.96822 0.92866 1.01880 1.21246 0.98875 0.93099 1.00208 1.21345 0.90878 1.00858 0.99123 1.20316 1.01867 0.86589 1.03426 1.19091 0.89764 0.90115 1.08517 0.89198 0.86318 0.88585 0.72535 0.88827 0.86334 0.82222 0.81038 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 11.04 127.77 1.41 2.56 16 2 N -0.50 -15.75 3.23 -541.36 -1.75 -17.50 16 3 C 0.51 21.93 8.27 260.52 2.15 24.08 16 4 N -1.01 -43.05 5.79 -58.54 -0.34 -43.38 16 5 S 2.72 152.86 4.84 -56.49 -0.27 152.59 16 6 O -1.00 -64.00 16.89 -128.00 -2.16 -66.16 16 7 O -1.02 -60.22 18.02 -128.00 -2.31 -62.52 16 8 C -1.02 -59.24 9.67 67.73 0.65 -58.59 16 9 H 0.11 5.84 7.81 -2.91 -0.02 5.82 16 10 C 0.07 4.29 5.46 84.65 0.46 4.75 16 11 N -0.89 -54.13 13.19 21.45 0.28 -53.84 16 12 Si 0.99 43.27 29.54 68.60 2.03 45.30 16 13 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 14 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 15 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 16 N -0.55 -27.19 9.99 -190.37 -1.90 -29.10 16 17 C 0.02 0.98 7.22 39.40 0.28 1.26 16 18 C -0.10 -3.34 10.10 22.49 0.23 -3.11 16 19 C -0.11 -2.55 10.01 22.25 0.22 -2.32 16 20 C -0.10 -1.85 10.03 22.32 0.22 -1.63 16 21 C -0.10 -2.15 10.04 22.31 0.22 -1.93 16 22 C 0.03 1.05 6.87 38.72 0.27 1.32 16 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.10 1.44 7.34 -2.39 -0.02 1.42 16 26 H 0.44 14.07 8.00 -96.74 -0.77 13.29 16 27 H 0.30 16.37 8.31 -92.70 -0.77 15.60 16 28 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 29 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -88.94 291.49 0.11 -88.83 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.40 Total: 19.40 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 6.13 Total: -33.60 kcal Atomic # 7 Polarization: -140.12 SS G_CDS: -3.71 Total: -143.82 kcal Atomic # 8 Polarization: -124.22 SS G_CDS: -4.47 Total: -128.69 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 152.86 SS G_CDS: -0.27 Total: 152.59 kcal Total: -88.94 0.11 -88.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935159.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.839 kcal (2) G-P(sol) polarization free energy of solvation -88.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds