Wall clock time and date at job start Fri Apr 10 2020 17:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36885 * 125.00566 * 2 1 4 4 C 1.34238 * 109.92216 * 179.97438 * 3 2 1 5 5 C 1.46392 * 106.90323 * 0.02562 * 4 3 2 6 6 C 1.39703 * 134.23122 * 180.02562 * 5 4 3 7 7 C 1.38769 * 117.98898 * 179.73071 * 6 5 4 8 8 N 1.40014 * 120.37238 * 180.25623 * 7 6 5 9 9 S 1.65603 * 120.00069 * 225.27075 * 8 7 6 10 10 O 1.42100 * 106.40239 * 178.53502 * 9 8 7 11 11 O 1.42094 * 106.40074 * 311.45950 * 9 8 7 12 12 C 1.76204 * 107.21646 * 64.99679 * 9 8 7 13 13 H 1.08007 * 119.99796 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00240 * 179.97438 * 12 9 8 15 15 N 1.31518 * 119.99458 * 0.02562 * 14 12 9 16 16 Si 1.86791 * 120.00297 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47228 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47229 * 120.00168 * 16 14 12 19 19 H 1.48502 * 109.47403 * 240.00093 * 16 14 12 20 20 C 1.39267 * 119.25499 * 0.52306 * 7 6 5 21 21 N 1.31564 * 121.48062 * 359.45093 * 20 7 6 22 22 C 1.32623 * 121.78250 * 0.28433 * 21 20 7 23 23 H 1.09008 * 109.46866 * 270.04162 * 1 2 3 24 24 H 1.08999 * 109.46713 * 30.03830 * 1 2 3 25 25 H 1.08994 * 109.47230 * 150.04074 * 1 2 3 26 26 H 1.07997 * 125.03705 * 359.97438 * 3 2 1 27 27 H 1.07998 * 126.54615 * 179.97438 * 4 3 2 28 28 H 1.08001 * 121.00641 * 359.97438 * 6 5 4 29 29 H 0.97001 * 120.00357 * 45.27006 * 8 7 6 30 30 H 0.97001 * 119.99764 * 179.97438 * 15 14 12 31 31 H 1.08002 * 119.26189 * 179.73537 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2503 1.1212 0.0000 4 6 3.5464 0.7719 0.0006 5 6 3.5929 -0.6913 0.0003 6 6 4.6244 -1.6335 0.0011 7 6 4.2787 -2.9775 0.0063 8 7 5.2723 -3.9639 0.0127 9 16 5.1509 -5.2680 -1.0007 10 8 6.3133 -6.0556 -0.7821 11 8 3.8309 -5.7720 -0.8498 12 6 5.2654 -4.6591 -2.6502 13 1 5.3916 -3.6013 -2.8278 14 6 5.1951 -5.5332 -3.7142 15 7 5.0420 -6.8214 -3.4979 16 14 5.3172 -4.8878 -5.4628 17 1 5.4855 -3.4126 -5.4354 18 1 6.4861 -5.5064 -6.1383 19 1 4.0777 -5.2313 -6.2050 20 6 2.9325 -3.3340 -0.0006 21 7 1.9811 -2.4253 -0.0012 22 6 2.2546 -1.1276 -0.0008 23 1 -0.3633 0.0007 1.0278 24 1 -0.3633 0.8897 -0.5144 25 1 -0.3633 -0.8903 -0.5132 26 1 1.8817 2.1363 -0.0004 27 1 4.3931 1.4423 0.0003 28 1 5.6595 -1.3253 0.0017 29 1 6.0318 -3.8835 0.6107 30 1 4.9922 -7.4363 -4.2464 31 1 2.6634 -4.3800 -0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935414.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:39 Heat of formation + Delta-G solvation = -9.929817 kcal Electronic energy + Delta-G solvation = -19575.276800 eV Core-core repulsion = 16370.151250 eV Total energy + Delta-G solvation = -3205.125549 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27363 -38.08482 -35.36415 -34.44038 -34.11512 -33.14907 -32.97765 -29.85334 -28.34752 -26.16969 -26.05339 -23.33981 -21.81784 -20.22231 -19.13954 -17.88784 -17.32681 -16.67467 -16.61728 -15.76839 -15.45410 -14.91585 -14.78031 -14.03528 -13.65923 -13.46445 -13.22356 -13.15328 -12.64469 -12.50224 -12.27047 -12.07985 -11.67050 -11.29601 -11.24389 -10.84953 -10.60129 -10.45816 -10.35071 -10.17242 -9.63517 -9.28324 -8.97494 -8.84244 -7.89719 -7.50510 -6.73849 -5.36001 1.27513 1.65331 2.20333 2.71951 2.83414 3.05150 3.13399 3.21608 4.03341 4.20705 4.49969 4.60581 4.63227 4.75724 4.86440 5.18008 5.22023 5.32308 5.45676 5.51056 5.69469 5.71953 5.88814 6.10237 6.28024 6.40656 6.63473 6.82422 6.89067 7.20920 7.28347 7.31829 7.75490 7.94756 8.36648 8.85903 10.20196 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.021181 B = 0.005806 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.639556 B = 4821.809009 C = 5299.888910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.480 5.480 3 C 0.055 3.945 4 C -0.199 4.199 5 C -0.139 4.139 6 C -0.061 4.061 7 C 0.102 3.898 8 N -1.068 6.068 9 S 2.705 3.295 10 O -0.996 6.996 11 O -0.995 6.995 12 C -1.013 5.013 13 H 0.104 0.896 14 C 0.134 3.866 15 N -0.844 5.844 16 Si 0.921 3.079 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.270 1.270 20 C 0.124 3.876 21 N -0.479 5.479 22 C 0.263 3.737 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.171 0.829 27 H 0.148 0.852 28 H 0.137 0.863 29 H 0.412 0.588 30 H 0.291 0.709 31 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 15.017 5.727 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.168 5.168 3 C -0.070 4.070 4 C -0.225 4.225 5 C -0.147 4.147 6 C -0.092 4.092 7 C 0.002 3.998 8 N -0.813 5.813 9 S 2.807 3.193 10 O -0.986 6.986 11 O -0.985 6.985 12 C -1.147 5.147 13 H 0.122 0.878 14 C -0.084 4.084 15 N -0.473 5.473 16 Si 0.745 3.255 17 H -0.186 1.186 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.044 4.044 21 N -0.192 5.192 22 C 0.032 3.968 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.188 0.812 27 H 0.165 0.835 28 H 0.154 0.846 29 H 0.246 0.754 30 H 0.102 0.898 31 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.430 13.658 5.869 16.197 hybrid contribution 1.339 1.149 -1.162 2.113 sum -5.091 14.807 4.706 16.349 Atomic orbital electron populations 1.21908 0.77015 1.04168 1.02785 1.43601 1.05995 1.03273 1.63885 1.21725 0.90339 0.90585 1.04361 1.21561 0.96018 0.92446 1.12454 1.19690 0.92828 0.94461 1.07671 1.20894 0.98894 0.90462 0.98914 1.18156 0.89501 0.88783 1.03390 1.53964 1.31031 1.40389 1.55901 1.00882 0.73203 0.70592 0.74640 1.93397 1.51355 1.66570 1.87287 1.93297 1.40245 1.77346 1.87614 1.30443 1.66141 1.04308 1.13845 0.87781 1.24727 0.88473 0.93607 1.01595 1.69893 1.39549 1.02590 1.35318 0.86117 0.78640 0.80107 0.80678 1.18566 1.19508 1.19529 1.23656 0.86547 0.99897 0.94345 1.66585 1.37549 0.98593 1.16456 1.18493 0.87837 0.87333 1.03123 0.91583 0.90314 0.89535 0.81171 0.83473 0.84556 0.75445 0.89825 0.78796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 11.08 59.85 0.66 1.46 16 2 N -0.48 -6.46 3.18 -123.61 -0.39 -6.86 16 3 C 0.05 0.60 11.29 -16.71 -0.19 0.42 16 4 C -0.20 -2.52 11.08 -37.71 -0.42 -2.93 16 5 C -0.14 -2.31 6.38 -105.12 -0.67 -2.98 16 6 C -0.06 -1.03 10.16 -38.84 -0.39 -1.43 16 7 C 0.10 1.99 6.24 -83.54 -0.52 1.47 16 8 N -1.07 -21.30 5.79 32.52 0.19 -21.11 16 9 S 2.71 70.07 4.95 -107.50 -0.53 69.53 16 10 O -1.00 -28.32 18.02 -57.17 -1.03 -29.35 16 11 O -1.00 -27.57 14.97 -57.17 -0.86 -28.43 16 12 C -1.01 -27.82 9.68 30.60 0.30 -27.52 16 13 H 0.10 2.69 7.81 -52.48 -0.41 2.28 16 14 C 0.13 3.73 5.46 -17.82 -0.10 3.63 16 15 N -0.84 -24.49 13.19 55.43 0.73 -23.75 16 16 Si 0.92 20.76 29.54 -169.99 -5.02 15.74 16 17 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 C 0.12 2.58 10.33 -17.28 -0.18 2.40 16 21 N -0.48 -9.42 10.38 -12.08 -0.13 -9.55 16 22 C 0.26 4.62 7.91 -155.51 -1.23 3.39 16 23 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 24 H 0.08 0.52 8.13 -51.93 -0.42 0.09 16 25 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.41 6.78 8.96 -34.47 -0.31 6.47 16 30 H 0.29 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.20 4.29 5.58 -52.49 -0.29 3.99 16 LS Contribution 290.18 15.07 4.37 4.37 Total: -1.00 -35.73 290.18 -8.09 -43.82 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -2.68 Total: 7.67 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -2.74 Total: -22.08 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.40 Total: -61.27 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -1.89 Total: -57.78 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 70.07 SS G_CDS: -0.53 Total: 69.53 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -35.73 -8.09 -43.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935414.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.885 kcal (2) G-P(sol) polarization free energy of solvation -35.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds