Wall clock time and date at job start Fri Apr 10 2020 17:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36885 * 125.00566 * 2 1 4 4 C 1.34238 * 109.92216 * 179.97438 * 3 2 1 5 5 C 1.46392 * 106.90323 * 0.02562 * 4 3 2 6 6 C 1.39703 * 134.23122 * 180.02562 * 5 4 3 7 7 C 1.38769 * 117.98898 * 179.73071 * 6 5 4 8 8 N 1.40014 * 120.37238 * 180.25623 * 7 6 5 9 9 S 1.65603 * 120.00069 * 225.27075 * 8 7 6 10 10 O 1.42100 * 106.40239 * 178.53502 * 9 8 7 11 11 O 1.42094 * 106.40074 * 311.45950 * 9 8 7 12 12 C 1.76204 * 107.21646 * 64.99679 * 9 8 7 13 13 H 1.08007 * 119.99796 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00240 * 179.97438 * 12 9 8 15 15 N 1.31518 * 119.99458 * 0.02562 * 14 12 9 16 16 Si 1.86791 * 120.00297 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47228 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47229 * 120.00168 * 16 14 12 19 19 H 1.48502 * 109.47403 * 240.00093 * 16 14 12 20 20 C 1.39267 * 119.25499 * 0.52306 * 7 6 5 21 21 N 1.31564 * 121.48062 * 359.45093 * 20 7 6 22 22 C 1.32623 * 121.78250 * 0.28433 * 21 20 7 23 23 H 1.09008 * 109.46866 * 270.04162 * 1 2 3 24 24 H 1.08999 * 109.46713 * 30.03830 * 1 2 3 25 25 H 1.08994 * 109.47230 * 150.04074 * 1 2 3 26 26 H 1.07997 * 125.03705 * 359.97438 * 3 2 1 27 27 H 1.07998 * 126.54615 * 179.97438 * 4 3 2 28 28 H 1.08001 * 121.00641 * 359.97438 * 6 5 4 29 29 H 0.97001 * 120.00357 * 45.27006 * 8 7 6 30 30 H 0.97001 * 119.99764 * 179.97438 * 15 14 12 31 31 H 1.08002 * 119.26189 * 179.73537 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2503 1.1212 0.0000 4 6 3.5464 0.7719 0.0006 5 6 3.5929 -0.6913 0.0003 6 6 4.6244 -1.6335 0.0011 7 6 4.2787 -2.9775 0.0063 8 7 5.2723 -3.9639 0.0127 9 16 5.1509 -5.2680 -1.0007 10 8 6.3133 -6.0556 -0.7821 11 8 3.8309 -5.7720 -0.8498 12 6 5.2654 -4.6591 -2.6502 13 1 5.3916 -3.6013 -2.8278 14 6 5.1951 -5.5332 -3.7142 15 7 5.0420 -6.8214 -3.4979 16 14 5.3172 -4.8878 -5.4628 17 1 5.4855 -3.4126 -5.4354 18 1 6.4861 -5.5064 -6.1383 19 1 4.0777 -5.2313 -6.2050 20 6 2.9325 -3.3340 -0.0006 21 7 1.9811 -2.4253 -0.0012 22 6 2.2546 -1.1276 -0.0008 23 1 -0.3633 0.0007 1.0278 24 1 -0.3633 0.8897 -0.5144 25 1 -0.3633 -0.8903 -0.5132 26 1 1.8817 2.1363 -0.0004 27 1 4.3931 1.4423 0.0003 28 1 5.6595 -1.3253 0.0017 29 1 6.0318 -3.8835 0.6107 30 1 4.9922 -7.4363 -4.2464 31 1 2.6634 -4.3800 -0.0009 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935414.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:24:39 Heat of formation + Delta-G solvation = -37.331265 kcal Electronic energy + Delta-G solvation = -19576.465016 eV Core-core repulsion = 16370.151250 eV Total energy + Delta-G solvation = -3206.313765 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.44728 -39.39955 -37.48086 -36.25974 -35.96763 -35.19185 -34.10641 -31.05308 -29.64083 -28.29512 -27.06677 -24.60857 -23.18359 -21.35387 -21.04300 -19.63390 -18.73834 -18.42550 -18.04917 -17.36391 -16.87434 -16.47647 -16.06017 -15.95041 -15.58983 -14.68501 -14.38409 -14.15242 -14.04955 -14.02000 -13.61207 -13.34430 -13.12480 -13.05638 -12.99360 -12.60853 -12.48028 -12.33043 -12.31528 -11.89942 -11.28696 -11.10482 -10.78627 -10.33225 -9.12505 -8.83874 -8.69516 -7.51672 -0.01202 0.05364 0.47540 1.30315 1.31309 1.48912 1.69646 1.82879 2.17488 2.54374 2.73879 2.85434 3.41352 3.59355 3.76384 3.90984 3.96651 4.15844 4.35772 4.44662 4.49198 4.57466 4.74172 4.77026 4.96954 4.99389 5.22851 5.34816 5.51808 5.55433 5.85973 6.05107 6.25570 6.31212 6.74934 7.00394 8.17678 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.021181 B = 0.005806 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.639556 B = 4821.809009 C = 5299.888910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.482 5.482 3 C 0.082 3.918 4 C -0.212 4.212 5 C -0.150 4.150 6 C -0.053 4.053 7 C 0.078 3.922 8 N -1.051 6.051 9 S 2.716 3.284 10 O -1.030 7.030 11 O -1.024 7.024 12 C -1.034 5.034 13 H 0.114 0.886 14 C 0.074 3.926 15 N -0.889 5.889 16 Si 0.987 3.013 17 H -0.252 1.252 18 H -0.253 1.253 19 H -0.260 1.260 20 C 0.091 3.909 21 N -0.496 5.496 22 C 0.235 3.765 23 H 0.079 0.921 24 H 0.120 0.880 25 H 0.066 0.934 26 H 0.228 0.772 27 H 0.179 0.821 28 H 0.166 0.834 29 H 0.427 0.573 30 H 0.300 0.700 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.185 19.339 4.954 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.169 5.169 3 C -0.042 4.042 4 C -0.237 4.237 5 C -0.158 4.158 6 C -0.083 4.083 7 C -0.022 4.022 8 N -0.801 5.801 9 S 2.818 3.182 10 O -1.020 7.020 11 O -1.014 7.014 12 C -1.168 5.168 13 H 0.132 0.868 14 C -0.140 4.140 15 N -0.520 5.520 16 Si 0.805 3.195 17 H -0.175 1.175 18 H -0.177 1.177 19 H -0.184 1.184 20 C -0.077 4.077 21 N -0.209 5.209 22 C 0.002 3.998 23 H 0.098 0.902 24 H 0.138 0.862 25 H 0.085 0.915 26 H 0.244 0.756 27 H 0.196 0.804 28 H 0.183 0.817 29 H 0.264 0.736 30 H 0.111 0.889 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.688 17.976 5.124 19.853 hybrid contribution 1.277 0.037 -0.810 1.512 sum -5.411 18.013 4.314 19.297 Atomic orbital electron populations 1.22186 0.74905 1.05273 1.04093 1.44058 1.07502 1.02565 1.62747 1.22700 0.89547 0.91831 1.00167 1.21974 0.98071 0.90316 1.13359 1.20212 0.92173 0.96791 1.06603 1.21169 1.00671 0.89251 0.97250 1.18170 0.88581 0.89617 1.05855 1.53166 1.31969 1.39628 1.55349 1.00245 0.72042 0.71121 0.74792 1.93338 1.52328 1.68532 1.87829 1.93268 1.41352 1.78751 1.88020 1.30784 1.66094 1.04969 1.14945 0.86782 1.25939 0.87654 0.93731 1.06658 1.69970 1.40720 1.04104 1.37214 0.85150 0.79596 0.79991 0.74781 1.17473 1.17731 1.18391 1.23250 0.87719 0.99275 0.97451 1.66436 1.37564 0.99951 1.16952 1.18939 0.89731 0.87461 1.03652 0.90196 0.86190 0.91494 0.75596 0.80354 0.81667 0.73572 0.88934 0.81578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 11.08 127.77 1.42 2.64 16 2 N -0.48 -11.41 3.18 -544.99 -1.73 -13.14 16 3 C 0.08 1.36 11.29 82.99 0.94 2.30 16 4 C -0.21 -4.42 11.08 23.48 0.26 -4.16 16 5 C -0.15 -4.66 6.38 -20.18 -0.13 -4.79 16 6 C -0.05 -1.75 10.16 22.75 0.23 -1.52 16 7 C 0.08 3.12 6.24 38.21 0.24 3.35 16 8 N -1.05 -43.36 5.79 -51.02 -0.30 -43.66 16 9 S 2.72 146.90 4.95 -56.49 -0.28 146.62 16 10 O -1.03 -60.99 18.02 -128.00 -2.31 -63.30 16 11 O -1.02 -60.34 14.97 -128.00 -1.92 -62.25 16 12 C -1.03 -57.96 9.68 67.73 0.66 -57.31 16 13 H 0.11 5.94 7.81 -2.91 -0.02 5.92 16 14 C 0.07 4.14 5.46 84.65 0.46 4.60 16 15 N -0.89 -53.00 13.19 21.45 0.28 -52.72 16 16 Si 0.99 42.09 29.54 68.60 2.03 44.12 16 17 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 18 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 19 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 20 C 0.09 4.00 10.33 84.98 0.88 4.88 16 21 N -0.50 -20.16 10.38 -192.14 -1.99 -22.15 16 22 C 0.24 8.02 7.91 133.85 1.06 9.07 16 23 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.12 0.96 8.13 -2.39 -0.02 0.94 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.23 1.16 8.06 -2.91 -0.02 1.14 16 27 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 28 H 0.17 4.30 8.06 -2.91 -0.02 4.28 16 29 H 0.43 14.40 8.96 -96.75 -0.87 13.54 16 30 H 0.30 16.01 8.31 -92.71 -0.77 15.24 16 31 H 0.17 8.07 5.58 -2.91 -0.02 8.06 16 Total: -1.00 -82.12 290.18 0.11 -82.01 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.32 Total: 25.41 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 6.01 Total: -40.93 kcal Atomic # 7 Polarization: -127.93 SS G_CDS: -3.74 Total: -131.67 kcal Atomic # 8 Polarization: -121.33 SS G_CDS: -4.22 Total: -125.55 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 146.90 SS G_CDS: -0.28 Total: 146.62 kcal Total: -82.12 0.11 -82.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935414.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.675 kcal (2) G-P(sol) polarization free energy of solvation -82.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds