Wall clock time and date at job start Fri Apr 10 2020 17:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39863 * 125.47177 * 2 1 4 4 C 1.30257 * 110.08498 * 179.97438 * 3 2 1 5 5 C 1.45937 * 107.81280 * 0.24587 * 4 3 2 6 6 C 1.39972 * 133.92216 * 180.42470 * 5 4 3 7 7 C 1.38046 * 119.46791 * 179.59748 * 6 5 4 8 8 N 1.39941 * 119.83517 * 179.72440 * 7 6 5 9 9 S 1.65600 * 119.99982 * 225.01870 * 8 7 6 10 10 O 1.42102 * 106.40594 * 178.54361 * 9 8 7 11 11 O 1.42105 * 106.40496 * 311.46661 * 9 8 7 12 12 C 1.76203 * 107.21626 * 65.00476 * 9 8 7 13 13 H 1.07995 * 119.99914 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99699 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00337 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99570 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47031 * 60.00089 * 16 14 12 18 18 H 1.48504 * 109.46957 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47125 * 299.99799 * 16 14 12 20 20 C 1.39551 * 120.32512 * 359.74963 * 7 6 5 21 21 C 1.36494 * 120.75077 * 0.02562 * 20 7 6 22 22 C 1.37254 * 125.47235 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47498 * 89.97232 * 1 2 3 24 24 H 1.08998 * 109.47337 * 209.97203 * 1 2 3 25 25 H 1.09003 * 109.47127 * 329.97624 * 1 2 3 26 26 H 1.08002 * 126.09072 * 179.97438 * 4 3 2 27 27 H 1.08008 * 120.26365 * 359.34442 * 6 5 4 28 28 H 0.97001 * 120.00354 * 45.02765 * 8 7 6 29 29 H 0.97003 * 119.99877 * 179.97438 * 15 14 12 30 30 H 1.07998 * 119.62333 * 180.02562 * 20 7 6 31 31 H 1.07999 * 119.95083 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2766 1.1390 0.0000 4 6 3.5325 0.7934 0.0005 5 6 3.5943 -0.6646 -0.0050 6 6 4.6426 -1.5921 0.0004 7 6 4.3549 -2.9422 0.0007 8 7 5.3971 -3.8761 0.0003 9 16 5.3367 -5.1838 -1.0141 10 8 6.5389 -5.9113 -0.8029 11 8 4.0449 -5.7546 -0.8565 12 6 5.4108 -4.5682 -2.6634 13 1 5.4809 -3.5052 -2.8404 14 6 5.3791 -5.4439 -3.7280 15 7 5.2932 -6.7383 -3.5125 16 14 5.4569 -4.7912 -5.4766 17 1 6.7228 -4.0389 -5.6683 18 1 5.4062 -5.9273 -6.4317 19 1 4.3030 -3.8888 -5.7200 20 6 3.0300 -3.3803 0.0008 21 6 1.9991 -2.4856 0.0001 22 6 2.2615 -1.1178 -0.0005 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 4.3775 1.4661 0.0003 27 1 5.6685 -1.2540 0.0003 28 1 6.1548 -3.7577 0.5942 29 1 5.2705 -7.3543 -4.2615 30 1 2.8178 -4.4392 0.0013 31 1 0.9785 -2.8389 -0.0002 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972324.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:24 Heat of formation + Delta-G solvation = 2.843428 kcal Electronic energy + Delta-G solvation = -19534.164921 eV Core-core repulsion = 16329.593262 eV Total energy + Delta-G solvation = -3204.571660 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.00395 -37.66802 -35.32776 -34.11100 -33.64841 -33.30066 -33.04737 -29.92622 -28.36113 -26.17288 -26.10281 -22.88025 -21.61319 -20.58573 -19.11881 -17.81854 -17.11575 -16.85285 -16.45847 -15.46721 -15.36867 -14.84974 -14.35064 -14.08744 -13.88537 -13.61080 -13.29897 -12.99528 -12.86802 -12.46468 -12.07025 -11.74016 -11.33426 -11.21776 -11.05614 -10.79846 -10.64021 -10.61124 -10.43295 -10.21173 -9.90407 -9.45686 -9.26745 -8.86560 -8.31254 -7.29962 -6.73849 -5.36376 1.17989 1.70271 2.21636 2.51405 2.67439 3.07973 3.11861 3.18221 4.02702 4.04955 4.52264 4.53668 4.61677 4.78629 4.92186 5.15840 5.27155 5.37734 5.47888 5.54586 5.67758 5.74627 5.92838 6.23950 6.35131 6.42268 6.62541 6.68758 6.95458 7.06600 7.24087 7.30378 7.72793 7.83579 7.94058 8.85275 10.19805 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.005747 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.621738 B = 4870.586557 C = 5350.182323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.415 5.415 3 N -0.261 5.261 4 C 0.070 3.930 5 C -0.165 4.165 6 C -0.074 4.074 7 C 0.144 3.856 8 N -1.074 6.074 9 S 2.708 3.292 10 O -0.998 6.998 11 O -0.998 6.998 12 C -1.014 5.014 13 H 0.104 0.896 14 C 0.135 3.865 15 N -0.845 5.845 16 Si 0.920 3.080 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.089 4.089 21 C -0.124 4.124 22 C 0.110 3.890 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.194 0.806 27 H 0.131 0.869 28 H 0.411 0.589 29 H 0.292 0.708 30 H 0.169 0.831 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.759 11.655 5.973 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.206 5.206 3 N -0.074 5.074 4 C -0.127 4.127 5 C -0.173 4.173 6 C -0.099 4.099 7 C 0.046 3.954 8 N -0.818 5.818 9 S 2.809 3.191 10 O -0.989 6.989 11 O -0.987 6.987 12 C -1.148 5.148 13 H 0.122 0.878 14 C -0.084 4.084 15 N -0.475 5.475 16 Si 0.744 3.256 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.188 1.188 20 C -0.112 4.112 21 C -0.146 4.146 22 C -0.004 4.004 23 H 0.085 0.915 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.211 0.789 27 H 0.149 0.851 28 H 0.245 0.755 29 H 0.102 0.898 30 H 0.187 0.813 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.961 11.446 6.114 14.726 hybrid contribution 0.939 0.233 -1.202 1.544 sum -6.022 11.680 4.911 14.029 Atomic orbital electron populations 1.21667 0.74581 1.03806 1.02760 1.48051 1.05487 1.01095 1.65939 1.76467 1.02715 1.09353 1.18838 1.24972 0.94525 0.93085 1.00164 1.19636 0.92682 0.93024 1.11974 1.20482 0.98075 0.90641 1.00667 1.17105 0.87551 0.88516 1.02212 1.53964 1.28512 1.43223 1.56138 1.00780 0.73084 0.70619 0.74586 1.93394 1.48746 1.69323 1.87390 1.93289 1.42409 1.75447 1.87602 1.30402 1.66775 1.03726 1.13885 0.87805 1.24720 0.88436 0.93653 1.01549 1.69876 1.39818 1.02312 1.35478 0.86194 0.79911 0.79234 0.80235 1.18780 1.20070 1.18819 1.21702 0.90612 1.02719 0.96125 1.19631 0.99813 0.88244 1.06952 1.18834 0.90613 0.89430 1.01514 0.91548 0.89882 0.89910 0.78948 0.85080 0.75544 0.89751 0.81344 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.10 11.40 59.85 0.68 1.78 16 2 N -0.42 -5.91 4.05 -65.43 -0.27 -6.17 16 3 N -0.26 -3.80 12.40 31.87 0.40 -3.40 16 4 C 0.07 0.93 12.28 -15.14 -0.19 0.74 16 5 C -0.16 -2.57 6.36 -105.21 -0.67 -3.24 16 6 C -0.07 -1.17 10.03 -39.00 -0.39 -1.56 16 7 C 0.14 2.66 6.21 -83.74 -0.52 2.14 16 8 N -1.07 -20.85 5.77 32.42 0.19 -20.67 16 9 S 2.71 69.08 4.95 -107.50 -0.53 68.55 16 10 O -1.00 -28.23 18.02 -57.17 -1.03 -29.26 16 11 O -1.00 -27.10 14.92 -57.17 -0.85 -27.96 16 12 C -1.01 -27.40 9.68 30.60 0.30 -27.10 16 13 H 0.10 2.62 7.81 -52.49 -0.41 2.21 16 14 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 15 N -0.85 -24.29 13.19 55.43 0.73 -23.56 16 16 Si 0.92 20.50 29.54 -169.99 -5.02 15.48 16 17 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 19 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 20 C -0.09 -1.64 9.10 -39.72 -0.36 -2.01 16 21 C -0.12 -1.98 9.94 -39.82 -0.40 -2.37 16 22 C 0.11 1.74 6.87 -84.09 -0.58 1.16 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 27 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.41 6.62 8.96 -34.47 -0.31 6.31 16 29 H 0.29 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.17 3.39 5.54 -52.49 -0.29 3.10 16 31 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 290.69 15.07 4.38 4.38 Total: -1.00 -35.27 290.69 -6.91 -42.18 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -2.68 Total: 7.30 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -2.22 Total: -26.87 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 1.05 Total: -53.80 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: -1.88 Total: -57.21 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 69.08 SS G_CDS: -0.53 Total: 68.55 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.27 -6.91 -42.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972324.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.019 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds