Wall clock time and date at job start Fri Apr 10 2020 17:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00111 * 2 1 4 4 C 1.52994 * 109.47015 * 276.24113 * 3 2 1 5 5 H 1.09001 * 112.96839 * 65.06086 * 4 3 2 6 6 C 1.53948 * 113.76888 * 293.38556 * 4 3 2 7 7 C 1.53953 * 86.28567 * 222.09228 * 6 4 3 8 8 N 1.47576 * 113.77225 * 196.74027 * 4 3 2 9 9 C 1.36939 * 134.48889 * 318.93442 * 8 4 3 10 10 H 1.07998 * 120.00517 * 5.91259 * 9 8 4 11 11 C 1.38817 * 120.00052 * 185.90900 * 9 8 4 12 12 N 1.31618 * 119.99742 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00234 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47331 * 89.99693 * 13 11 9 15 15 H 1.48494 * 109.46896 * 210.00094 * 13 11 9 16 16 H 1.48501 * 109.46744 * 329.99475 * 13 11 9 17 17 C 1.34776 * 119.99482 * 179.97438 * 2 1 3 18 18 O 1.21740 * 119.99579 * 184.74346 * 17 2 1 19 19 C 1.46373 * 120.00529 * 4.73982 * 17 2 1 20 20 C 1.33982 * 119.23121 * 151.52329 * 19 17 2 21 21 O 1.35006 * 121.68408 * 180.11143 * 20 19 17 22 22 C 1.43248 * 116.76643 * 342.79963 * 21 20 19 23 23 C 1.53558 * 108.08698 * 45.48664 * 22 21 20 24 24 O 1.36214 * 119.23156 * 331.25308 * 19 17 2 25 25 H 1.09001 * 109.47458 * 264.15416 * 1 2 3 26 26 H 1.08999 * 109.47086 * 24.15853 * 1 2 3 27 27 H 1.09000 * 109.47219 * 144.15870 * 1 2 3 28 28 H 1.08998 * 109.46828 * 36.24257 * 3 2 1 29 29 H 1.09000 * 109.46687 * 156.24143 * 3 2 1 30 30 H 1.08993 * 113.73906 * 336.43290 * 6 4 3 31 31 H 1.08999 * 113.74255 * 107.64245 * 6 4 3 32 32 H 1.09004 * 113.76930 * 137.91091 * 7 6 4 33 33 H 1.09002 * 113.76765 * 269.18372 * 7 6 4 34 34 H 0.96999 * 120.00020 * 180.02562 * 12 11 9 35 35 H 1.07995 * 119.15395 * 0.09623 * 20 19 17 36 36 H 1.08991 * 109.73648 * 165.13727 * 22 21 20 37 37 H 1.08995 * 109.73900 * 285.79166 * 22 21 20 38 38 H 1.08994 * 109.74956 * 61.47372 * 23 22 21 39 39 H 1.08994 * 109.74673 * 182.16768 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3167 1.7887 -1.4339 5 1 1.3537 2.0478 -1.8738 6 6 3.1971 0.9104 -2.3413 7 6 3.7772 2.2287 -2.8853 8 7 3.3482 2.8301 -1.6052 9 6 3.7469 3.9157 -0.8719 10 1 3.3222 4.0930 0.1051 11 6 4.6971 4.7884 -1.3843 12 7 5.2152 4.5721 -2.5747 13 14 5.2416 6.2689 -0.3837 14 1 6.4032 5.8946 0.4624 15 1 5.6314 7.3698 -1.3008 16 1 4.1227 6.7193 0.4827 17 6 2.1388 -1.1673 0.0005 18 8 3.3531 -1.1690 0.0877 19 6 1.4107 -2.4328 -0.1037 20 6 2.0137 -3.4904 -0.6631 21 8 1.3878 -4.6803 -0.7864 22 6 0.2245 -4.8844 0.0242 23 6 -0.6471 -3.6234 -0.0666 24 8 0.1379 -2.5093 0.3754 25 1 -0.3634 -0.1047 1.0223 26 1 -0.3633 0.9377 -0.4206 27 1 -0.3634 -0.8331 -0.6017 28 1 1.6614 1.9977 0.6076 29 1 3.1937 1.1130 0.4140 30 1 3.9210 0.3043 -1.7967 31 1 2.6340 0.3392 -3.0793 32 1 4.8583 2.2094 -3.0227 33 1 3.2452 2.6175 -3.7536 34 1 5.8794 5.1817 -2.9327 35 1 3.0261 -3.3883 -1.0248 36 1 -0.3339 -5.7452 -0.3435 37 1 0.5220 -5.0534 1.0590 38 1 -0.9610 -3.4662 -1.0985 39 1 -1.5232 -3.7346 0.5722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085468859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:38 Heat of formation + Delta-G solvation = -19.855806 kcal Electronic energy + Delta-G solvation = -22850.566562 eV Core-core repulsion = 19376.205246 eV Total energy + Delta-G solvation = -3474.361317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27989 -39.47597 -37.63445 -37.21939 -35.09815 -32.23336 -31.99608 -29.11417 -28.44797 -27.75317 -26.46644 -25.21275 -23.24017 -22.79889 -20.79226 -19.34719 -18.92083 -18.51794 -17.62792 -16.78955 -16.58493 -15.92727 -15.37109 -15.22078 -14.92337 -14.63445 -14.45033 -14.08676 -13.84925 -13.55604 -13.32969 -12.83479 -12.52311 -12.34100 -12.23801 -11.76052 -11.33200 -11.28274 -10.98488 -10.85869 -10.75883 -10.65969 -10.36808 -9.86423 -9.76316 -9.62992 -9.39850 -8.72797 -8.46422 -8.13764 -6.78207 -5.69199 -3.00731 1.37085 2.87998 2.93978 3.11914 3.44489 3.46643 3.49962 3.50849 4.03058 4.50838 4.52908 4.62454 4.75318 4.99360 5.03983 5.16879 5.22922 5.40626 5.50198 5.61260 5.64963 5.78913 5.91208 5.96287 6.04091 6.18316 6.43701 6.50500 6.60409 6.76244 6.81760 6.86047 7.18605 7.35124 7.53293 7.64599 7.67602 8.06130 8.32328 9.12117 9.78943 10.70237 11.48689 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.037422 B = 0.003840 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.039535 B = 7289.393794 C = 7521.257427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.595 5.595 3 C 0.114 3.886 4 C 0.129 3.871 5 H 0.041 0.959 6 C -0.160 4.160 7 C 0.165 3.835 8 N -0.600 5.600 9 C -0.222 4.222 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.909 3.091 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.581 3.419 18 O -0.526 6.526 19 C -0.082 4.082 20 C 0.029 3.971 21 O -0.302 6.302 22 C 0.013 3.987 23 C 0.015 3.985 24 O -0.299 6.299 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.253 0.747 35 H 0.189 0.811 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.294 -18.420 4.078 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.327 5.327 3 C -0.009 4.009 4 C 0.020 3.980 5 H 0.059 0.941 6 C -0.198 4.198 7 C 0.040 3.960 8 N -0.327 5.327 9 C -0.350 4.350 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.368 3.632 18 O -0.405 6.405 19 C -0.130 4.130 20 C -0.037 4.037 21 O -0.214 6.214 22 C -0.062 4.062 23 C -0.061 4.061 24 O -0.215 6.215 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.206 0.794 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.520 -18.107 4.192 22.983 hybrid contribution -0.143 0.908 0.460 1.028 sum -13.663 -17.199 4.652 22.453 Atomic orbital electron populations 1.21849 0.79302 1.02629 1.01897 1.47639 1.07197 1.06051 1.71844 1.21886 0.97944 0.82213 0.98873 1.22504 0.93184 0.89437 0.92825 0.94143 1.23810 0.99514 0.97707 0.98764 1.22129 0.99373 0.86195 0.88265 1.46001 1.35648 1.29195 1.21808 1.18991 1.18732 0.99673 0.97609 0.90373 1.24793 1.00038 0.98847 0.96689 1.69839 1.31577 1.38399 1.16869 0.86163 0.78552 0.82443 0.78862 1.21549 1.21734 1.20734 1.17135 0.86480 0.82259 0.77316 1.90897 1.12565 1.86482 1.50520 1.20681 0.86229 0.95563 1.10540 1.23093 0.97516 0.82351 1.00761 1.86139 1.40969 1.32667 1.61624 1.23679 0.86804 0.99212 0.96546 1.23588 0.94294 0.86011 1.02160 1.86531 1.21485 1.45495 1.67943 0.92663 0.91260 0.90707 0.91267 0.88651 0.89858 0.93860 0.91639 0.95584 0.93725 0.79436 0.86385 0.90249 0.90524 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 9.26 59.85 0.55 1.59 16 2 N -0.60 -9.46 2.80 -183.24 -0.51 -9.97 16 3 C 0.11 2.15 5.40 -4.05 -0.02 2.13 16 4 C 0.13 2.73 4.56 -66.87 -0.30 2.42 16 5 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.16 -3.36 7.40 -25.79 -0.19 -3.55 16 7 C 0.17 4.15 7.38 -2.85 -0.02 4.13 16 8 N -0.60 -15.86 3.58 -169.73 -0.61 -16.46 16 9 C -0.22 -6.35 10.51 -15.06 -0.16 -6.51 16 10 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -28.11 11.56 55.49 0.64 -27.47 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.58 9.65 7.08 -12.99 -0.09 9.55 16 18 O -0.53 -10.48 14.85 5.15 0.08 -10.41 16 19 C -0.08 -1.09 6.02 -37.81 -0.23 -1.32 16 20 C 0.03 0.35 10.56 29.24 0.31 0.66 16 21 O -0.30 -3.16 10.47 -30.84 -0.32 -3.48 16 22 C 0.01 0.09 7.29 37.45 0.27 0.36 16 23 C 0.02 0.10 7.31 37.45 0.27 0.38 16 24 O -0.30 -3.27 7.17 -34.54 -0.25 -3.51 16 25 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16 27 H 0.07 0.82 5.91 -51.93 -0.31 0.51 16 28 H 0.07 1.24 8.12 -51.93 -0.42 0.81 16 29 H 0.10 2.08 7.19 -51.93 -0.37 1.71 16 30 H 0.08 1.85 6.98 -51.93 -0.36 1.49 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.80 7.46 -51.93 -0.39 1.41 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 35 H 0.19 2.27 7.67 -52.49 -0.40 1.86 16 36 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -34.42 322.16 -6.44 -40.86 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.60 Total: -1.57 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 0.30 Total: 9.55 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.48 Total: -53.90 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.49 Total: -17.40 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.42 -6.44 -40.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085468859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.003 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds