Wall clock time and date at job start Fri Apr 10 2020 17:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99932 * 2 1 4 4 C 1.53007 * 109.46618 * 84.72576 * 3 2 1 5 5 H 1.09002 * 112.96248 * 294.38832 * 4 3 2 6 6 C 1.53940 * 113.76946 * 66.07285 * 4 3 2 7 7 C 1.53940 * 86.29171 * 137.90555 * 6 4 3 8 8 N 1.47578 * 86.11790 * 336.38967 * 7 6 4 9 9 C 1.36938 * 134.49383 * 204.63705 * 8 7 6 10 10 H 1.08005 * 119.99815 * 184.73890 * 9 8 7 11 11 C 1.38804 * 120.00167 * 4.74573 * 9 8 7 12 12 N 1.31620 * 120.00016 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00273 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47077 * 60.00116 * 13 11 9 15 15 H 1.48500 * 109.47156 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47279 * 299.99695 * 13 11 9 17 17 C 1.34777 * 120.00096 * 180.02562 * 2 1 3 18 18 O 1.21734 * 120.00142 * 173.96521 * 17 2 1 19 19 C 1.46379 * 119.99893 * 353.97229 * 17 2 1 20 20 C 1.33973 * 119.23151 * 33.31950 * 19 17 2 21 21 O 1.35008 * 121.68881 * 180.12825 * 20 19 17 22 22 C 1.43245 * 116.82271 * 343.31819 * 21 20 19 23 23 C 1.53553 * 108.09208 * 45.25525 * 22 21 20 24 24 O 1.36213 * 119.23172 * 213.60132 * 19 17 2 25 25 H 1.09003 * 109.47331 * 85.49027 * 1 2 3 26 26 H 1.08996 * 109.47172 * 205.49147 * 1 2 3 27 27 H 1.08999 * 109.47237 * 325.49417 * 1 2 3 28 28 H 1.09000 * 109.47416 * 204.71990 * 3 2 1 29 29 H 1.08998 * 109.47351 * 324.72724 * 3 2 1 30 30 H 1.09005 * 113.73759 * 252.24996 * 6 4 3 31 31 H 1.08994 * 113.74484 * 23.45058 * 6 4 3 32 32 H 1.09009 * 113.77202 * 90.69040 * 7 6 4 33 33 H 1.08997 * 113.77167 * 221.97662 * 7 6 4 34 34 H 0.96999 * 120.00542 * 180.02562 * 12 11 9 35 35 H 1.07995 * 119.16114 * 0.39590 * 20 19 17 36 36 H 1.08998 * 109.74018 * 285.60510 * 22 21 20 37 37 H 1.09006 * 109.78037 * 164.92756 * 22 21 20 38 38 H 1.09002 * 109.75365 * 182.21636 * 23 22 21 39 39 H 1.09001 * 109.75023 * 61.47493 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3376 1.7766 1.4365 5 1 1.3819 2.0408 1.8892 6 6 3.2204 0.8836 2.3270 7 6 3.8183 2.1923 2.8744 8 7 3.3827 2.8050 1.6045 9 6 3.7862 3.8914 0.8750 10 1 3.2397 4.1803 -0.0107 11 6 4.8974 4.6213 1.2738 12 7 5.5631 4.2695 2.3533 13 14 5.4482 6.1029 0.2783 14 1 4.3548 7.1070 0.2389 15 1 6.6498 6.7048 0.9102 16 1 5.7777 5.6751 -1.1050 17 6 2.1389 -1.1672 -0.0005 18 8 3.3512 -1.1701 -0.1114 19 6 1.4131 -2.4314 0.1320 20 6 0.1866 -2.5401 -0.3959 21 8 -0.5279 -3.6816 -0.3006 22 6 0.1935 -4.8684 0.0501 23 6 1.1321 -4.5285 1.2169 24 8 1.9981 -3.4681 0.7943 25 1 -0.3634 0.0808 -1.0245 26 1 -0.3633 -0.9276 0.4423 27 1 -0.3634 0.8469 0.5822 28 1 3.1876 1.1167 -0.4297 29 1 1.6526 2.0029 -0.5934 30 1 2.6607 0.3131 3.0682 31 1 3.9313 0.2738 1.7695 32 1 3.2984 2.5803 3.7505 33 1 4.9005 2.1617 3.0011 34 1 6.3395 4.7798 2.6323 35 1 -0.2399 -1.6944 -0.9147 36 1 0.7774 -5.2104 -0.8044 37 1 -0.5047 -5.6482 0.3545 38 1 1.7243 -5.4049 1.4806 39 1 0.5472 -4.2056 2.0781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085468860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:39 Heat of formation + Delta-G solvation = 1.285516 kcal Electronic energy + Delta-G solvation = -22879.369065 eV Core-core repulsion = 19405.924505 eV Total energy + Delta-G solvation = -3473.444560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35300 -39.53283 -37.65967 -37.10912 -35.39322 -32.53769 -31.95632 -29.64862 -27.80980 -27.75004 -26.90706 -25.16099 -23.22980 -22.74243 -20.80967 -19.65097 -18.91997 -18.47428 -17.47402 -17.06830 -16.63789 -15.71476 -15.58482 -15.20236 -15.01382 -14.56504 -14.38395 -14.20138 -13.94089 -13.64358 -13.37038 -13.02935 -12.71331 -12.27522 -12.21930 -11.63834 -11.36157 -11.19632 -10.97090 -10.82844 -10.75963 -10.61598 -10.40534 -9.80366 -9.70026 -9.63774 -9.46783 -8.69859 -8.39117 -8.28617 -6.78625 -5.67288 -3.01263 1.35072 2.38815 2.92896 3.32065 3.44437 3.48012 3.49784 3.59662 4.05033 4.50230 4.53797 4.55884 4.66523 4.80364 5.03038 5.05776 5.21291 5.22724 5.29972 5.49188 5.58061 5.61458 5.73029 5.91975 5.99508 6.15719 6.43148 6.53097 6.59389 6.71760 6.81392 6.86549 7.16271 7.35700 7.47457 7.60823 7.71378 8.08502 8.31689 9.11938 9.79191 10.69644 11.48650 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036547 B = 0.003904 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.959806 B = 7170.983473 C = 7432.908158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.599 5.599 3 C 0.117 3.883 4 C 0.128 3.872 5 H 0.042 0.958 6 C -0.157 4.157 7 C 0.156 3.844 8 N -0.599 5.599 9 C -0.224 4.224 10 H 0.077 0.923 11 C -0.006 4.006 12 N -0.919 5.919 13 Si 0.911 3.089 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.571 3.429 18 O -0.510 6.510 19 C -0.058 4.058 20 C -0.029 4.029 21 O -0.304 6.304 22 C 0.013 3.987 23 C 0.018 3.982 24 O -0.286 6.286 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.021 0.979 33 H 0.077 0.923 34 H 0.253 0.747 35 H 0.198 0.802 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 -17.399 -3.594 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.334 5.334 3 C -0.005 4.005 4 C 0.020 3.980 5 H 0.060 0.940 6 C -0.196 4.196 7 C 0.031 3.969 8 N -0.325 5.325 9 C -0.352 4.352 10 H 0.095 0.905 11 C -0.203 4.203 12 N -0.566 5.566 13 Si 0.741 3.259 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.358 3.642 18 O -0.385 6.385 19 C -0.107 4.107 20 C -0.094 4.094 21 O -0.217 6.217 22 C -0.062 4.062 23 C -0.058 4.058 24 O -0.199 6.199 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.039 0.961 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.214 0.786 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.150 -17.154 -3.695 22.542 hybrid contribution 0.073 0.787 -0.331 0.857 sum -14.077 -16.367 -4.027 21.960 Atomic orbital electron populations 1.22534 0.80466 1.04664 1.01722 1.47580 1.06612 1.05984 1.73244 1.21915 0.97967 0.81549 0.99072 1.22526 0.93162 0.89466 0.92866 0.94030 1.23788 0.99426 0.97578 0.98770 1.22267 1.00224 0.86459 0.87979 1.45892 1.35294 1.29345 1.21993 1.18932 1.08149 1.02735 1.05392 0.90498 1.24774 0.97815 0.99693 0.97995 1.69818 1.20740 1.41134 1.24860 0.86229 0.77895 0.82410 0.79373 1.21302 1.21605 1.21058 1.17143 0.86948 0.82106 0.78038 1.90880 1.13254 1.86599 1.47747 1.20525 0.95115 0.91234 1.03808 1.24058 0.92960 0.90501 1.01905 1.86114 1.35859 1.15168 1.84566 1.23681 0.97052 0.86930 0.98584 1.23665 0.94360 0.91229 0.96546 1.86446 1.34198 1.28438 1.70848 0.91930 0.89326 0.90308 0.88409 0.91024 0.94004 0.89791 0.96077 0.90444 0.93665 0.78609 0.90267 0.86286 0.86158 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.48 8.81 59.85 0.53 1.01 16 2 N -0.60 -9.02 2.80 -183.23 -0.51 -9.54 16 3 C 0.12 2.17 5.46 -4.04 -0.02 2.15 16 4 C 0.13 2.69 4.58 -66.86 -0.31 2.39 16 5 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 6 C -0.16 -3.41 7.32 -25.81 -0.19 -3.60 16 7 C 0.16 3.95 7.64 -2.98 -0.02 3.92 16 8 N -0.60 -15.81 3.57 -170.76 -0.61 -16.42 16 9 C -0.22 -6.38 10.51 -15.06 -0.16 -6.54 16 10 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 12 N -0.92 -28.08 11.30 55.49 0.63 -27.46 16 13 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 C 0.57 9.78 7.00 -12.98 -0.09 9.68 16 18 O -0.51 -11.08 15.38 -5.16 -0.08 -11.16 16 19 C -0.06 -0.81 6.23 -37.81 -0.24 -1.05 16 20 C -0.03 -0.31 8.38 29.23 0.25 -0.07 16 21 O -0.30 -2.94 10.47 -30.85 -0.32 -3.26 16 22 C 0.01 0.09 7.30 37.44 0.27 0.37 16 23 C 0.02 0.15 7.31 37.44 0.27 0.43 16 24 O -0.29 -4.06 10.43 -43.61 -0.45 -4.51 16 25 H 0.06 0.47 7.48 -51.93 -0.39 0.08 16 26 H 0.09 0.77 4.68 -51.93 -0.24 0.53 16 27 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 28 H 0.10 2.14 7.20 -51.93 -0.37 1.77 16 29 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.98 6.91 -51.93 -0.36 1.62 16 32 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.08 2.17 6.95 -51.93 -0.36 1.81 16 34 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.20 1.64 4.61 -52.49 -0.24 1.40 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -36.08 318.03 -6.70 -42.78 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.31 Total: -1.21 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 0.20 Total: 8.43 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.50 Total: -53.41 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.86 Total: -18.94 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.08 -6.70 -42.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085468860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.067 kcal (2) G-P(sol) polarization free energy of solvation -36.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds