Wall clock time and date at job start Fri Apr 10 2020 17:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99932 * 2 1 4 4 C 1.53007 * 109.46618 * 84.72576 * 3 2 1 5 5 H 1.09002 * 112.96248 * 294.38832 * 4 3 2 6 6 C 1.53940 * 113.76946 * 66.07285 * 4 3 2 7 7 C 1.53940 * 86.29171 * 137.90555 * 6 4 3 8 8 N 1.47578 * 86.11790 * 336.38967 * 7 6 4 9 9 C 1.36938 * 134.49383 * 204.63705 * 8 7 6 10 10 H 1.08005 * 119.99815 * 184.73890 * 9 8 7 11 11 C 1.38804 * 120.00167 * 4.74573 * 9 8 7 12 12 N 1.31620 * 120.00016 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00273 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47077 * 60.00116 * 13 11 9 15 15 H 1.48500 * 109.47156 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47279 * 299.99695 * 13 11 9 17 17 C 1.34777 * 120.00096 * 180.02562 * 2 1 3 18 18 O 1.21734 * 120.00142 * 173.96521 * 17 2 1 19 19 C 1.46379 * 119.99893 * 353.97229 * 17 2 1 20 20 C 1.33973 * 119.23151 * 33.31950 * 19 17 2 21 21 O 1.35008 * 121.68881 * 180.12825 * 20 19 17 22 22 C 1.43245 * 116.82271 * 343.31819 * 21 20 19 23 23 C 1.53553 * 108.09208 * 45.25525 * 22 21 20 24 24 O 1.36213 * 119.23172 * 213.60132 * 19 17 2 25 25 H 1.09003 * 109.47331 * 85.49027 * 1 2 3 26 26 H 1.08996 * 109.47172 * 205.49147 * 1 2 3 27 27 H 1.08999 * 109.47237 * 325.49417 * 1 2 3 28 28 H 1.09000 * 109.47416 * 204.71990 * 3 2 1 29 29 H 1.08998 * 109.47351 * 324.72724 * 3 2 1 30 30 H 1.09005 * 113.73759 * 252.24996 * 6 4 3 31 31 H 1.08994 * 113.74484 * 23.45058 * 6 4 3 32 32 H 1.09009 * 113.77202 * 90.69040 * 7 6 4 33 33 H 1.08997 * 113.77167 * 221.97662 * 7 6 4 34 34 H 0.96999 * 120.00542 * 180.02562 * 12 11 9 35 35 H 1.07995 * 119.16114 * 0.39590 * 20 19 17 36 36 H 1.08998 * 109.74018 * 285.60510 * 22 21 20 37 37 H 1.09006 * 109.78037 * 164.92756 * 22 21 20 38 38 H 1.09002 * 109.75365 * 182.21636 * 23 22 21 39 39 H 1.09001 * 109.75023 * 61.47493 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3376 1.7766 1.4365 5 1 1.3819 2.0408 1.8892 6 6 3.2204 0.8836 2.3270 7 6 3.8183 2.1923 2.8744 8 7 3.3827 2.8050 1.6045 9 6 3.7862 3.8914 0.8750 10 1 3.2397 4.1803 -0.0107 11 6 4.8974 4.6213 1.2738 12 7 5.5631 4.2695 2.3533 13 14 5.4482 6.1029 0.2783 14 1 4.3548 7.1070 0.2389 15 1 6.6498 6.7048 0.9102 16 1 5.7777 5.6751 -1.1050 17 6 2.1389 -1.1672 -0.0005 18 8 3.3512 -1.1701 -0.1114 19 6 1.4131 -2.4314 0.1320 20 6 0.1866 -2.5401 -0.3959 21 8 -0.5279 -3.6816 -0.3006 22 6 0.1935 -4.8684 0.0501 23 6 1.1321 -4.5285 1.2169 24 8 1.9981 -3.4681 0.7943 25 1 -0.3634 0.0808 -1.0245 26 1 -0.3633 -0.9276 0.4423 27 1 -0.3634 0.8469 0.5822 28 1 3.1876 1.1167 -0.4297 29 1 1.6526 2.0029 -0.5934 30 1 2.6607 0.3131 3.0682 31 1 3.9313 0.2738 1.7695 32 1 3.2984 2.5803 3.7505 33 1 4.9005 2.1617 3.0011 34 1 6.3395 4.7798 2.6323 35 1 -0.2399 -1.6944 -0.9147 36 1 0.7774 -5.2104 -0.8044 37 1 -0.5047 -5.6482 0.3545 38 1 1.7243 -5.4049 1.4806 39 1 0.5472 -4.2056 2.0781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085468860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:39 Heat of formation + Delta-G solvation = -24.777812 kcal Electronic energy + Delta-G solvation = -22880.499256 eV Core-core repulsion = 19405.924505 eV Total energy + Delta-G solvation = -3474.574751 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.24424 -40.78679 -39.37168 -38.00939 -36.66880 -34.28861 -33.26585 -30.62336 -29.85333 -28.92232 -28.01023 -25.98201 -25.29045 -24.30687 -21.94335 -20.80397 -20.59765 -19.30070 -18.75683 -18.40836 -17.91422 -17.17629 -16.93222 -16.41126 -16.09175 -15.83706 -15.75942 -15.40836 -15.16288 -14.83696 -14.72318 -14.13301 -14.03592 -13.79511 -13.46462 -13.35242 -12.90669 -12.57961 -12.51973 -12.48487 -12.32165 -11.87734 -11.79512 -11.62169 -11.53605 -11.32064 -10.91530 -10.81175 -9.72910 -9.18225 -8.88098 -7.85914 -5.21269 0.39485 1.33148 1.45704 1.50300 1.55729 2.02690 2.34502 2.47810 2.68070 3.32993 3.42166 3.44649 3.60697 3.90099 3.92607 4.01371 4.16586 4.22791 4.26113 4.33267 4.44509 4.49743 4.60251 4.65958 4.75024 4.80296 4.87654 4.92244 4.99570 5.07862 5.24413 5.43935 5.54412 5.71613 5.80400 5.96850 6.24049 6.44704 6.92706 7.10156 7.64019 8.59896 9.30502 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036547 B = 0.003904 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.959806 B = 7170.983473 C = 7432.908158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.594 5.594 3 C 0.131 3.869 4 C 0.137 3.863 5 H 0.070 0.930 6 C -0.136 4.136 7 C 0.150 3.850 8 N -0.627 5.627 9 C -0.230 4.230 10 H 0.090 0.910 11 C -0.072 4.072 12 N -0.957 5.957 13 Si 0.980 3.020 14 H -0.272 1.272 15 H -0.298 1.298 16 H -0.277 1.277 17 C 0.565 3.435 18 O -0.575 6.575 19 C -0.098 4.098 20 C 0.016 3.984 21 O -0.304 6.304 22 C 0.011 3.989 23 C 0.010 3.990 24 O -0.326 6.326 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.024 0.976 33 H 0.039 0.961 34 H 0.246 0.754 35 H 0.223 0.777 36 H 0.081 0.919 37 H 0.158 0.842 38 H 0.142 0.858 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.712 -18.313 -4.748 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.327 5.327 3 C 0.007 3.993 4 C 0.030 3.970 5 H 0.087 0.913 6 C -0.174 4.174 7 C 0.025 3.975 8 N -0.354 5.354 9 C -0.358 4.358 10 H 0.108 0.892 11 C -0.265 4.265 12 N -0.606 5.606 13 Si 0.808 3.192 14 H -0.198 1.198 15 H -0.224 1.224 16 H -0.203 1.203 17 C 0.354 3.646 18 O -0.455 6.455 19 C -0.146 4.146 20 C -0.049 4.049 21 O -0.216 6.216 22 C -0.063 4.063 23 C -0.065 4.065 24 O -0.241 6.241 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.239 0.761 36 H 0.099 0.901 37 H 0.176 0.824 38 H 0.160 0.840 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.916 -18.104 -4.866 25.931 hybrid contribution 1.072 0.913 0.044 1.409 sum -16.844 -17.190 -4.823 24.546 Atomic orbital electron populations 1.22918 0.76785 1.05998 1.04338 1.47566 1.08636 1.04188 1.72311 1.21470 0.97036 0.83656 0.97169 1.22687 0.92772 0.87069 0.94455 0.91300 1.23489 0.98988 0.96009 0.98929 1.22185 0.98192 0.88784 0.88344 1.46217 1.37064 1.29830 1.22279 1.19416 1.07984 1.02771 1.05626 0.89221 1.25689 0.98351 1.03049 0.99390 1.70040 1.21236 1.42498 1.26861 0.85127 0.77248 0.79009 0.77802 1.19796 1.22399 1.20331 1.17735 0.86447 0.83620 0.76771 1.90840 1.16159 1.87633 1.50888 1.20088 0.96319 0.90566 1.07621 1.24404 0.90979 0.91250 0.98302 1.86132 1.36137 1.15537 1.83781 1.23990 0.97659 0.86563 0.98129 1.24016 0.94659 0.90570 0.97209 1.86361 1.36605 1.29608 1.71548 0.88498 0.87852 0.89139 0.92641 0.88720 0.91177 0.92353 0.95829 0.94281 0.94485 0.76130 0.90105 0.82413 0.84012 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 8.81 127.77 1.13 1.75 16 2 N -0.59 -16.91 2.80 -851.82 -2.39 -19.29 16 3 C 0.13 4.73 5.46 86.38 0.47 5.20 16 4 C 0.14 5.65 4.58 45.09 0.21 5.86 16 5 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 6 C -0.14 -5.98 7.32 31.25 0.23 -5.75 16 7 C 0.15 7.88 7.64 86.48 0.66 8.54 16 8 N -0.63 -33.57 3.57 -694.17 -2.48 -36.05 16 9 C -0.23 -13.17 10.51 84.03 0.88 -12.29 16 10 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 11 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 12 N -0.96 -60.76 11.30 21.65 0.24 -60.52 16 13 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 C 0.56 19.37 7.00 86.36 0.60 19.98 16 18 O -0.58 -26.39 15.38 5.41 0.08 -26.31 16 19 C -0.10 -2.62 6.23 23.42 0.15 -2.48 16 20 C 0.02 0.29 8.38 66.85 0.56 0.85 16 21 O -0.30 -4.63 10.47 -69.30 -0.73 -5.35 16 22 C 0.01 0.12 7.30 72.17 0.53 0.65 16 23 C 0.01 0.15 7.31 72.17 0.53 0.68 16 24 O -0.33 -9.15 10.43 -73.81 -0.77 -9.92 16 25 H 0.10 0.93 7.48 -2.39 -0.02 0.91 16 26 H 0.10 1.34 4.68 -2.39 -0.01 1.32 16 27 H 0.09 1.28 8.11 -2.39 -0.02 1.26 16 28 H 0.05 2.51 7.20 -2.39 -0.02 2.49 16 29 H 0.09 2.97 8.11 -2.39 -0.02 2.96 16 30 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 31 H 0.06 2.90 6.91 -2.39 -0.02 2.88 16 32 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.04 2.33 6.95 -2.39 -0.02 2.31 16 34 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.22 2.66 4.61 -2.91 -0.01 2.65 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.16 0.50 8.14 -2.38 -0.02 0.48 16 38 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -84.02 318.03 3.46 -80.55 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 1.06 Total: 8.52 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 6.41 Total: 19.18 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -4.62 Total: -115.87 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.41 Total: -41.58 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -84.02 3.46 -80.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085468860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.777 kcal (2) G-P(sol) polarization free energy of solvation -84.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds