Wall clock time and date at job start Fri Apr 10 2020 17:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00002 * 2 1 4 4 H 1.48497 * 109.47373 * 270.00368 * 3 2 1 5 5 H 1.48509 * 109.46604 * 30.00454 * 3 2 1 6 6 H 1.48503 * 109.46976 * 149.99894 * 3 2 1 7 7 C 1.38816 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.50239 * 130.83628 * 0.02562 * 9 7 2 11 11 H 1.08993 * 115.86056 * 359.62873 * 10 9 7 12 12 C 1.55844 * 101.04782 * 233.94827 * 10 9 7 13 13 C 1.54846 * 103.45092 * 327.06410 * 12 10 9 14 14 C 1.50235 * 130.83783 * 180.02562 * 9 7 2 15 15 H 1.08996 * 115.85766 * 359.66271 * 14 9 7 16 16 C 1.55844 * 101.05034 * 233.98691 * 14 9 7 17 17 H 1.08997 * 110.62620 * 85.54777 * 16 14 9 18 18 N 1.46500 * 110.62945 * 208.57258 * 16 14 9 19 19 C 1.34771 * 119.99846 * 274.06055 * 18 16 14 20 20 O 1.21278 * 120.00334 * 359.97438 * 19 18 16 21 21 C 1.50709 * 119.99953 * 179.97438 * 19 18 16 22 22 N 1.46496 * 109.46928 * 179.97438 * 21 19 18 23 23 C 1.34778 * 119.99477 * 179.97438 * 22 21 19 24 24 N 1.34777 * 119.99839 * 180.02562 * 23 22 21 25 25 O 1.21583 * 120.00154 * 0.02562 * 23 22 21 26 26 C 1.54856 * 103.44337 * 327.06092 * 16 14 9 27 27 H 0.96992 * 120.00297 * 359.97438 * 1 2 3 28 28 H 1.08998 * 110.62708 * 85.55843 * 12 10 9 29 29 H 1.09006 * 110.62155 * 208.41206 * 12 10 9 30 30 H 1.08993 * 110.63116 * 241.51490 * 13 12 10 31 31 H 1.08994 * 110.63004 * 118.48628 * 13 12 10 32 32 H 0.97003 * 119.99713 * 94.05576 * 18 16 14 33 33 H 1.08999 * 109.46672 * 300.00297 * 21 19 18 34 34 H 1.08997 * 109.46611 * 59.99722 * 21 19 18 35 35 H 0.96993 * 120.00085 * 0.02562 * 22 21 19 36 36 H 0.97006 * 120.00069 * 0.02562 * 24 23 22 37 37 H 0.96996 * 120.00090 * 179.97438 * 24 23 22 38 38 H 1.09003 * 110.62641 * 118.49190 * 26 16 14 39 39 H 1.09000 * 110.62996 * 241.50487 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1499 -2.6706 -0.0005 11 1 -0.8012 -1.7967 0.0058 12 6 -0.2739 -3.6109 1.2361 13 6 1.0671 -4.3851 1.2358 14 6 1.8189 -3.8072 -0.0005 15 1 2.9014 -3.9342 -0.0063 16 6 1.0675 -4.3846 -1.2378 17 1 1.6254 -4.1863 -2.1528 18 7 0.8337 -5.8216 -1.0753 19 6 1.7837 -6.7045 -1.4418 20 8 2.8319 -6.3094 -1.9066 21 6 1.5434 -8.1829 -1.2742 22 7 2.7167 -8.9245 -1.7429 23 6 2.7287 -10.2711 -1.6882 24 7 3.8082 -10.9534 -2.1190 25 8 1.7656 -10.8703 -1.2504 26 6 -0.2737 -3.6103 -1.2380 27 1 -0.4850 0.8400 0.0004 28 1 -0.3813 -3.0291 2.1516 29 1 -1.1147 -4.2942 1.1160 30 1 0.8932 -5.4542 1.1144 31 1 1.6249 -4.1873 2.1511 32 1 -0.0048 -6.1376 -0.7038 33 1 1.3690 -8.4055 -0.2215 34 1 0.6709 -8.4775 -1.8572 35 1 3.4850 -8.4463 -2.0919 36 1 4.5767 -10.4752 -2.4680 37 1 3.8170 -11.9225 -2.0793 38 1 -0.3808 -3.0282 -2.1533 39 1 -1.1127 -4.2956 -1.1173 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108920663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:53 Heat of formation + Delta-G solvation = -17.893066 kcal Electronic energy + Delta-G solvation = -22575.144099 eV Core-core repulsion = 19133.160644 eV Total energy + Delta-G solvation = -3441.983455 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41866 -39.71127 -38.38654 -34.54668 -34.03852 -33.72139 -32.37704 -29.52928 -29.11430 -28.36057 -26.71733 -24.17915 -21.69012 -21.24179 -20.70157 -19.58360 -18.82668 -18.58207 -17.69099 -17.02905 -16.41178 -15.98776 -15.60428 -15.04852 -14.83546 -14.69676 -14.29702 -14.25249 -13.91545 -13.17307 -12.81468 -12.37734 -12.22678 -11.80379 -11.54063 -11.09043 -10.94977 -10.92940 -10.86419 -10.56678 -10.25815 -10.12620 -9.95111 -9.94419 -9.79194 -9.45339 -9.28730 -9.28026 -8.96373 -8.60110 -6.95135 -5.75783 -3.13992 2.55096 2.64597 3.00943 3.37495 3.40787 3.43864 3.45553 4.30452 4.42193 4.72316 5.15866 5.21531 5.23137 5.35149 5.50070 5.75166 5.80196 5.92912 6.01941 6.08011 6.14862 6.24452 6.29456 6.45728 6.49744 6.56056 6.60776 6.67858 6.76523 6.91595 6.95535 7.22956 7.49041 7.61438 7.74359 7.77807 8.13590 8.29343 8.39754 9.07412 9.70045 10.49850 11.33847 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.036306 B = 0.003605 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.032899 B = 7764.795850 C = 8138.413199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.211 4.211 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.153 3.847 11 H 0.155 0.845 12 C -0.138 4.138 13 C -0.131 4.131 14 C 0.129 3.871 15 H 0.085 0.915 16 C 0.127 3.873 17 H 0.083 0.917 18 N -0.704 5.704 19 C 0.504 3.496 20 O -0.542 6.542 21 C 0.118 3.882 22 N -0.732 5.732 23 C 0.708 3.292 24 N -0.867 5.867 25 O -0.599 6.599 26 C -0.140 4.140 27 H 0.254 0.746 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.399 0.601 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.409 0.591 36 H 0.398 0.602 37 H 0.415 0.585 38 H 0.066 0.934 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 -16.434 -2.887 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.339 4.339 8 H 0.097 0.903 9 N -0.310 5.310 10 C 0.047 3.953 11 H 0.172 0.828 12 C -0.177 4.177 13 C -0.170 4.170 14 C 0.019 3.981 15 H 0.103 0.897 16 C 0.021 3.979 17 H 0.101 0.899 18 N -0.355 5.355 19 C 0.289 3.711 20 O -0.420 6.420 21 C -0.011 4.011 22 N -0.391 5.391 23 C 0.406 3.594 24 N -0.435 5.435 25 O -0.477 6.477 26 C -0.180 4.180 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.233 0.767 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.246 0.754 36 H 0.226 0.774 37 H 0.247 0.753 38 H 0.085 0.915 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.049 -16.096 -2.816 16.469 hybrid contribution 0.827 0.641 -0.123 1.054 sum 2.876 -15.455 -2.938 15.993 Atomic orbital electron populations 1.69427 1.05001 1.25038 1.57687 1.24700 0.95651 0.97528 1.02816 0.86027 0.78515 0.83122 0.77573 1.21631 1.21667 1.20748 1.19062 0.90377 0.81851 1.42621 0.90306 1.46488 1.01603 0.98805 1.84139 1.23785 0.87714 0.95218 0.88620 0.82815 1.23058 0.95111 0.98224 1.01321 1.22903 0.97642 0.97552 0.98919 1.23181 0.96183 0.86170 0.92518 0.89668 1.22705 0.98346 0.76398 1.00417 0.89887 1.46160 1.18625 1.07387 1.63342 1.20409 0.84472 0.87987 0.78258 1.90689 1.25930 1.80114 1.45294 1.20924 0.89251 0.88717 1.02174 1.44716 1.20659 1.04703 1.69053 1.15847 0.83332 0.81585 0.78617 1.42927 1.18647 1.10916 1.70984 1.90971 1.35204 1.68515 1.53057 1.23298 0.93864 0.98445 1.02430 0.93524 0.92645 0.93543 0.93070 0.93033 0.76657 0.88513 0.88622 0.75368 0.77360 0.75330 0.91520 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.79 10.47 55.49 0.58 -25.21 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.21 -5.73 10.59 -15.06 -0.16 -5.89 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.59 -14.35 2.99 -145.82 -0.44 -14.78 16 10 C 0.15 3.35 4.72 -62.78 -0.30 3.05 16 11 H 0.16 3.87 5.52 -51.93 -0.29 3.59 16 12 C -0.14 -2.57 6.44 -24.24 -0.16 -2.72 16 13 C -0.13 -2.32 6.32 -24.26 -0.15 -2.48 16 14 C 0.13 2.60 5.35 -62.82 -0.34 2.26 16 15 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 16 C 0.13 2.24 3.07 -65.43 -0.20 2.04 16 17 H 0.08 1.65 7.71 -51.93 -0.40 1.25 16 18 N -0.70 -9.40 3.63 -51.40 -0.19 -9.59 16 19 C 0.50 6.77 7.89 -10.98 -0.09 6.69 16 20 O -0.54 -9.13 15.40 5.56 0.09 -9.04 16 21 C 0.12 1.27 6.15 -5.19 -0.03 1.24 16 22 N -0.73 -7.82 5.53 -66.41 -0.37 -8.19 16 23 C 0.71 8.03 8.84 -86.92 -0.77 7.26 16 24 N -0.87 -5.98 8.88 27.63 0.25 -5.73 16 25 O -0.60 -9.15 17.18 5.29 0.09 -9.06 16 26 C -0.14 -2.54 6.20 -24.22 -0.15 -2.69 16 27 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.72 7.82 -51.93 -0.41 0.32 16 30 H 0.05 0.76 6.48 -51.93 -0.34 0.43 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.40 4.27 8.02 -40.82 -0.33 3.94 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.41 4.14 7.45 -40.82 -0.30 3.84 16 36 H 0.40 1.72 8.84 -40.82 -0.36 1.36 16 37 H 0.41 2.31 8.93 -40.82 -0.36 1.95 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 0.84 7.34 -51.93 -0.38 0.46 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -33.09 319.12 -7.89 -40.98 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.25 Total: 10.76 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -2.43 Total: 8.34 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -0.16 Total: -63.50 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.18 Total: -18.11 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.09 -7.89 -40.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108920663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.086 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds