Wall clock time and date at job start Fri Apr 10 2020 17:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48497 * 109.46927 * 270.00029 * 3 2 1 5 5 H 1.48504 * 109.46966 * 29.99982 * 3 2 1 6 6 H 1.48496 * 109.47085 * 149.99976 * 3 2 1 7 7 C 1.37872 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00459 * 0.02562 * 7 2 1 10 10 O 1.42905 * 113.27797 * 313.06141 * 9 7 2 11 11 C 1.53502 * 114.20639 * 180.02562 * 9 7 2 12 12 N 1.47070 * 87.97873 * 220.34038 * 11 9 7 13 13 C 1.34777 * 136.05212 * 207.07785 * 12 11 9 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.73146 * 13 12 11 16 16 C 1.53004 * 109.47208 * 180.27843 * 15 13 12 17 17 H 1.08999 * 109.59992 * 55.32430 * 16 15 13 18 18 C 1.53341 * 109.60306 * 175.81027 * 16 15 13 19 19 C 1.53060 * 108.43434 * 187.27164 * 18 16 15 20 20 C 1.50175 * 109.89522 * 311.11367 * 19 18 16 21 21 O 1.21286 * 118.24675 * 197.56215 * 20 19 18 22 22 N 1.33353 * 123.50916 * 17.58757 * 20 19 18 23 23 C 1.45751 * 124.10577 * 357.75059 * 22 20 19 24 24 C 1.47062 * 87.88674 * 27.34302 * 12 11 9 25 25 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 26 26 H 0.96700 * 113.99698 * 46.93978 * 10 9 7 27 27 H 1.08996 * 113.46716 * 105.56433 * 11 9 7 28 28 H 1.08990 * 113.52038 * 335.12915 * 11 9 7 29 29 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 30 30 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 31 31 H 1.08998 * 109.68037 * 307.02120 * 18 16 15 32 32 H 1.09000 * 109.67357 * 67.56092 * 18 16 15 33 33 H 1.09003 * 109.39630 * 190.98908 * 19 18 16 34 34 H 1.08998 * 109.33471 * 71.20373 * 19 18 16 35 35 H 0.96999 * 117.94814 * 177.77024 * 22 20 19 36 36 H 1.09004 * 109.30411 * 258.79050 * 23 22 20 37 37 H 1.09000 * 109.13882 * 139.30511 * 23 22 20 38 38 H 1.08998 * 113.46736 * 87.43474 * 24 12 11 39 39 H 1.08998 * 113.46422 * 217.87103 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.1920 -2.5399 0.9592 11 6 2.1487 -3.7443 0.0018 12 7 1.2104 -4.3578 -0.9501 13 6 0.8361 -5.6119 -1.2721 14 8 1.3303 -6.5587 -0.6974 15 6 -0.2013 -5.8374 -2.3416 16 6 -0.4468 -7.3387 -2.5056 17 1 -0.7213 -7.7716 -1.5437 18 6 -1.5757 -7.5679 -3.5177 19 6 -1.9229 -9.0586 -3.5262 20 6 -0.6684 -9.8748 -3.6509 21 8 -0.7692 -11.0333 -3.9951 22 7 0.5504 -9.3939 -3.4028 23 6 0.8231 -8.0122 -3.0276 24 6 0.8652 -3.0011 -1.4006 25 1 -0.4849 0.8401 0.0004 26 1 -0.3717 -1.7541 0.9562 27 1 2.1842 -4.2528 0.9652 28 1 3.1388 -3.5670 -0.4178 29 1 -1.1314 -5.3465 -2.0549 30 1 0.1530 -5.4221 -3.2849 31 1 -2.4522 -6.9886 -3.2274 32 1 -1.2459 -7.2627 -4.5107 33 1 -2.5793 -9.2726 -4.3697 34 1 -2.4314 -9.3160 -2.5971 35 1 1.3027 -10.0017 -3.4771 36 1 1.1877 -7.4675 -3.8985 37 1 1.5852 -7.9972 -2.2484 38 1 1.5169 -2.6270 -2.1902 39 1 -0.1926 -2.8766 -1.6320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138322651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:06 Heat of formation + Delta-G solvation = -96.123442 kcal Electronic energy + Delta-G solvation = -22338.789183 eV Core-core repulsion = 18861.120653 eV Total energy + Delta-G solvation = -3477.668529 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49081 -39.60494 -37.91129 -36.41710 -34.09002 -33.48217 -32.26294 -31.46043 -29.07707 -26.76307 -25.21469 -25.11097 -24.36653 -22.06104 -20.20243 -19.17596 -18.31988 -17.50758 -17.22093 -16.53252 -15.98391 -15.82218 -15.37100 -15.12063 -14.98365 -14.30148 -14.15529 -14.02788 -13.48725 -13.33515 -13.17829 -12.78444 -12.41865 -12.21436 -11.90279 -11.64227 -11.62538 -11.32845 -11.15380 -11.07855 -11.03041 -10.96343 -10.55356 -10.34147 -9.84865 -9.67460 -9.28494 -9.08068 -8.84599 -8.46570 -7.93940 -6.47554 -4.57904 2.56946 3.07575 3.09104 3.18035 3.21030 3.23904 3.43851 4.11949 4.41756 4.52156 4.55821 4.63433 4.76131 4.99207 5.17831 5.28242 5.30592 5.48036 5.50234 5.54168 5.61951 5.66772 5.75207 5.85221 5.98243 6.09226 6.17454 6.32828 6.42278 6.53812 6.59617 6.68103 7.03037 7.26511 7.55938 7.72957 8.12951 8.41783 8.46480 8.64873 9.13803 9.41082 10.59122 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.043695 B = 0.003280 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.647481 B = 8534.328852 C = 8732.332493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.240 3.760 10 O -0.571 6.571 11 C 0.106 3.894 12 N -0.633 5.633 13 C 0.532 3.468 14 O -0.565 6.565 15 C -0.126 4.126 16 C -0.086 4.086 17 H 0.090 0.910 18 C -0.121 4.121 19 C -0.134 4.134 20 C 0.518 3.482 21 O -0.570 6.570 22 N -0.715 5.715 23 C 0.107 3.893 24 C 0.070 3.930 25 H 0.274 0.726 26 H 0.394 0.606 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.398 0.602 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.154 -7.071 -7.343 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.573 4.573 8 H 0.091 0.909 9 C 0.198 3.802 10 O -0.384 6.384 11 C -0.017 4.017 12 N -0.366 5.366 13 C 0.322 3.678 14 O -0.446 6.446 15 C -0.167 4.167 16 C -0.106 4.106 17 H 0.108 0.892 18 C -0.159 4.159 19 C -0.174 4.174 20 C 0.305 3.695 21 O -0.450 6.450 22 N -0.365 5.365 23 C -0.017 4.017 24 C -0.053 4.053 25 H 0.085 0.915 26 H 0.251 0.749 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.233 0.767 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.121 -8.642 -7.114 11.392 hybrid contribution 0.469 1.429 -0.277 1.529 sum -1.652 -7.212 -7.392 10.459 Atomic orbital electron populations 1.69256 1.06207 1.28269 1.50157 1.25077 0.95035 0.99959 0.92967 0.86306 0.79835 0.81847 0.78409 1.20270 1.20858 1.19509 1.21443 0.93943 0.89788 1.52101 0.90941 1.19570 0.85396 0.91051 0.84186 1.86048 1.45198 1.48416 1.58746 1.23327 0.93814 0.92268 0.92254 1.49767 1.42352 1.04851 1.39641 1.20025 0.83167 0.81003 0.83605 1.90607 1.58410 1.40515 1.55070 1.21571 0.99839 0.96296 0.98949 1.21195 0.94634 0.94651 1.00086 0.89205 1.21764 0.99099 0.95107 0.99889 1.21623 0.95440 0.94988 1.05308 1.20224 0.85605 0.87730 0.75904 1.90740 1.87104 1.18690 1.48424 1.45498 1.08647 1.12872 1.69528 1.21705 0.98833 0.80710 1.00441 1.24281 1.00446 0.77820 1.02728 0.91535 0.74935 0.91574 0.89726 0.88315 0.88954 0.90048 0.90956 0.88154 0.88131 0.76703 0.92052 0.88185 0.89996 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.73 11.01 55.43 0.61 -21.11 16 2 C 0.07 1.71 5.39 -17.82 -0.10 1.62 16 3 Si 0.91 18.62 29.54 -169.99 -5.02 13.59 16 4 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.53 -12.74 8.68 -34.44 -0.30 -13.04 16 8 H 0.07 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.24 5.43 1.59 -91.12 -0.14 5.28 16 10 O -0.57 -14.07 13.55 -35.23 -0.48 -14.55 16 11 C 0.11 2.16 8.02 -8.50 -0.07 2.10 16 12 N -0.63 -12.11 3.69 -185.05 -0.68 -12.79 16 13 C 0.53 9.30 7.83 -10.98 -0.09 9.21 16 14 O -0.56 -11.21 14.79 5.55 0.08 -11.13 16 15 C -0.13 -1.57 5.01 -27.88 -0.14 -1.71 16 16 C -0.09 -0.96 1.90 -90.48 -0.17 -1.14 16 17 H 0.09 1.15 7.95 -51.93 -0.41 0.74 16 18 C -0.12 -1.05 5.32 -26.52 -0.14 -1.19 16 19 C -0.13 -1.28 6.03 -28.11 -0.17 -1.45 16 20 C 0.52 6.65 7.71 -11.87 -0.09 6.55 16 21 O -0.57 -9.46 17.78 5.55 0.10 -9.36 16 22 N -0.71 -8.21 5.45 -61.39 -0.33 -8.54 16 23 C 0.11 1.21 6.10 -4.49 -0.03 1.18 16 24 C 0.07 1.37 7.86 -8.37 -0.07 1.31 16 25 H 0.27 6.31 8.31 -40.82 -0.34 5.98 16 26 H 0.39 9.82 6.32 45.56 0.29 10.11 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 29 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.09 0.99 8.12 -51.93 -0.42 0.57 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.40 4.23 8.80 -40.82 -0.36 3.87 16 36 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.10 1.34 6.17 -51.93 -0.32 1.01 16 38 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -28.96 323.35 -7.34 -36.31 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -4.99 Total: 13.99 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.50 Total: 8.72 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.41 Total: -42.45 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.30 Total: -35.03 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.96 -7.34 -36.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138322651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.817 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds