Wall clock time and date at job start Fri Apr 10 2020 17:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48497 * 109.46927 * 270.00029 * 3 2 1 5 5 H 1.48504 * 109.46966 * 29.99982 * 3 2 1 6 6 H 1.48496 * 109.47085 * 149.99976 * 3 2 1 7 7 C 1.37872 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00459 * 0.02562 * 7 2 1 10 10 O 1.42905 * 113.27797 * 313.06141 * 9 7 2 11 11 C 1.53502 * 114.20639 * 180.02562 * 9 7 2 12 12 N 1.47070 * 87.97873 * 220.34038 * 11 9 7 13 13 C 1.34777 * 136.05212 * 207.07785 * 12 11 9 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.73146 * 13 12 11 16 16 C 1.53004 * 109.47208 * 180.27843 * 15 13 12 17 17 H 1.08999 * 109.59992 * 55.32430 * 16 15 13 18 18 C 1.53341 * 109.60306 * 175.81027 * 16 15 13 19 19 C 1.53060 * 108.43434 * 187.27164 * 18 16 15 20 20 C 1.50175 * 109.89522 * 311.11367 * 19 18 16 21 21 O 1.21286 * 118.24675 * 197.56215 * 20 19 18 22 22 N 1.33353 * 123.50916 * 17.58757 * 20 19 18 23 23 C 1.45751 * 124.10577 * 357.75059 * 22 20 19 24 24 C 1.47062 * 87.88674 * 27.34302 * 12 11 9 25 25 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 26 26 H 0.96700 * 113.99698 * 46.93978 * 10 9 7 27 27 H 1.08996 * 113.46716 * 105.56433 * 11 9 7 28 28 H 1.08990 * 113.52038 * 335.12915 * 11 9 7 29 29 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 30 30 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 31 31 H 1.08998 * 109.68037 * 307.02120 * 18 16 15 32 32 H 1.09000 * 109.67357 * 67.56092 * 18 16 15 33 33 H 1.09003 * 109.39630 * 190.98908 * 19 18 16 34 34 H 1.08998 * 109.33471 * 71.20373 * 19 18 16 35 35 H 0.96999 * 117.94814 * 177.77024 * 22 20 19 36 36 H 1.09004 * 109.30411 * 258.79050 * 23 22 20 37 37 H 1.09000 * 109.13882 * 139.30511 * 23 22 20 38 38 H 1.08998 * 113.46736 * 87.43474 * 24 12 11 39 39 H 1.08998 * 113.46422 * 217.87103 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.1920 -2.5399 0.9592 11 6 2.1487 -3.7443 0.0018 12 7 1.2104 -4.3578 -0.9501 13 6 0.8361 -5.6119 -1.2721 14 8 1.3303 -6.5587 -0.6974 15 6 -0.2013 -5.8374 -2.3416 16 6 -0.4468 -7.3387 -2.5056 17 1 -0.7213 -7.7716 -1.5437 18 6 -1.5757 -7.5679 -3.5177 19 6 -1.9229 -9.0586 -3.5262 20 6 -0.6684 -9.8748 -3.6509 21 8 -0.7692 -11.0333 -3.9951 22 7 0.5504 -9.3939 -3.4028 23 6 0.8231 -8.0122 -3.0276 24 6 0.8652 -3.0011 -1.4006 25 1 -0.4849 0.8401 0.0004 26 1 -0.3717 -1.7541 0.9562 27 1 2.1842 -4.2528 0.9652 28 1 3.1388 -3.5670 -0.4178 29 1 -1.1314 -5.3465 -2.0549 30 1 0.1530 -5.4221 -3.2849 31 1 -2.4522 -6.9886 -3.2274 32 1 -1.2459 -7.2627 -4.5107 33 1 -2.5793 -9.2726 -4.3697 34 1 -2.4314 -9.3160 -2.5971 35 1 1.3027 -10.0017 -3.4771 36 1 1.1877 -7.4675 -3.8985 37 1 1.5852 -7.9972 -2.2484 38 1 1.5169 -2.6270 -2.1902 39 1 -0.1926 -2.8766 -1.6320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138322651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:06 Heat of formation + Delta-G solvation = -118.277578 kcal Electronic energy + Delta-G solvation = -22339.749858 eV Core-core repulsion = 18861.120653 eV Total energy + Delta-G solvation = -3478.629205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.57810 -40.99554 -39.33282 -37.55934 -35.84091 -34.40888 -34.09457 -32.43304 -30.55602 -28.09451 -26.80672 -26.52017 -25.26835 -23.06434 -21.75966 -20.07745 -19.83033 -19.19540 -18.23359 -17.85859 -17.25420 -17.09738 -16.76700 -16.39341 -16.28213 -15.90635 -15.33238 -15.11199 -14.67104 -14.54386 -14.39173 -14.03774 -13.91766 -13.64901 -13.37813 -13.07297 -12.76213 -12.72237 -12.52032 -12.23468 -12.22345 -12.12634 -11.96829 -11.79058 -11.31382 -10.89137 -10.77662 -10.58687 -10.19192 -10.05434 -9.51293 -8.25451 -6.41746 1.48193 1.52706 1.59024 1.60812 1.71164 2.02877 2.33388 2.42645 2.97254 3.45820 3.54998 3.68449 3.78756 3.81365 3.98272 4.19362 4.35755 4.38651 4.50327 4.53958 4.60857 4.65584 4.75653 4.76472 4.87383 4.92303 4.95090 4.99168 5.01551 5.17152 5.29171 5.34433 5.75640 5.75784 5.94536 6.32525 6.63801 6.97819 7.16163 7.21779 7.32717 7.52386 8.80319 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.043695 B = 0.003280 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.647481 B = 8534.328852 C = 8732.332493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.034 3.966 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.215 3.785 10 O -0.587 6.587 11 C 0.104 3.896 12 N -0.637 5.637 13 C 0.524 3.476 14 O -0.593 6.593 15 C -0.115 4.115 16 C -0.084 4.084 17 H 0.070 0.930 18 C -0.110 4.110 19 C -0.130 4.130 20 C 0.512 3.488 21 O -0.614 6.614 22 N -0.710 5.710 23 C 0.110 3.890 24 C 0.088 3.912 25 H 0.276 0.724 26 H 0.389 0.611 27 H 0.048 0.952 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.399 0.601 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.681 -6.255 -8.955 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.167 4.167 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.591 4.591 8 H 0.090 0.910 9 C 0.174 3.826 10 O -0.400 6.400 11 C -0.019 4.019 12 N -0.370 5.370 13 C 0.317 3.683 14 O -0.475 6.475 15 C -0.155 4.155 16 C -0.103 4.103 17 H 0.088 0.912 18 C -0.148 4.148 19 C -0.170 4.170 20 C 0.300 3.700 21 O -0.498 6.498 22 N -0.359 5.359 23 C -0.013 4.013 24 C -0.035 4.035 25 H 0.086 0.914 26 H 0.245 0.755 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.234 0.766 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.637 -7.820 -8.731 12.014 hybrid contribution 0.687 1.132 0.302 1.358 sum -1.950 -6.688 -8.429 10.935 Atomic orbital electron populations 1.69312 1.07039 1.28900 1.50429 1.25713 0.95745 1.02488 0.92708 0.85407 0.78432 0.78430 0.78468 1.19541 1.21066 1.19739 1.21678 0.94140 0.90731 1.52521 0.90987 1.19879 0.85518 0.91551 0.85698 1.86032 1.45750 1.48179 1.60004 1.23289 0.94711 0.91607 0.92265 1.49822 1.42283 1.05434 1.39471 1.21018 0.83429 0.79816 0.84080 1.90605 1.59472 1.41129 1.56307 1.21608 0.98481 0.97325 0.98048 1.21160 0.95480 0.93586 1.00075 0.91174 1.21731 0.98748 0.94537 0.99736 1.21669 0.93887 0.95049 1.06354 1.20862 0.86657 0.87470 0.74962 1.90719 1.87718 1.20684 1.50660 1.45530 1.08681 1.13113 1.68608 1.21670 0.98515 0.80656 1.00503 1.24003 1.00867 0.77598 1.00988 0.91374 0.75492 0.93350 0.88139 0.87015 0.86228 0.87939 0.89413 0.86582 0.87423 0.76567 0.90058 0.90522 0.88640 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -43.78 11.01 21.45 0.24 -43.54 16 2 C 0.03 1.58 5.39 84.65 0.46 2.04 16 3 Si 0.97 37.47 29.54 68.60 2.03 39.49 16 4 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.55 -26.06 8.68 25.60 0.22 -25.84 16 8 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 9 C 0.21 9.65 1.59 -11.12 -0.02 9.63 16 10 O -0.59 -29.15 13.55 -148.98 -2.02 -31.17 16 11 C 0.10 4.26 8.02 83.18 0.67 4.92 16 12 N -0.64 -23.62 3.69 -858.25 -3.16 -26.78 16 13 C 0.52 17.60 7.83 87.66 0.69 18.29 16 14 O -0.59 -23.35 14.79 -3.04 -0.04 -23.39 16 15 C -0.11 -2.51 5.01 29.85 0.15 -2.36 16 16 C -0.08 -1.66 1.90 -10.70 -0.02 -1.68 16 17 H 0.07 1.70 7.95 -2.39 -0.02 1.68 16 18 C -0.11 -1.50 5.32 30.73 0.16 -1.34 16 19 C -0.13 -2.16 6.03 29.70 0.18 -1.98 16 20 C 0.51 12.52 7.71 87.71 0.68 13.20 16 21 O -0.61 -20.24 17.78 -3.05 -0.05 -20.30 16 22 N -0.71 -15.59 5.45 -467.31 -2.55 -18.14 16 23 C 0.11 2.30 6.10 86.50 0.53 2.83 16 24 C 0.09 3.31 7.86 83.27 0.65 3.96 16 25 H 0.28 12.53 8.31 -92.71 -0.77 11.76 16 26 H 0.39 19.62 6.32 -74.06 -0.47 19.15 16 27 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.10 3.70 8.10 -2.39 -0.02 3.68 16 29 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.12 2.03 8.12 -2.39 -0.02 2.01 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.00 8.13 -2.39 -0.02 0.98 16 33 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.40 8.36 8.80 -92.71 -0.82 7.55 16 36 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 37 H 0.08 2.01 6.17 -2.39 -0.01 2.00 16 38 H 0.10 3.31 8.10 -2.39 -0.02 3.29 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -62.50 323.35 -1.42 -63.92 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: -0.20 Total: 38.25 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 4.35 Total: 21.66 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -5.47 Total: -88.46 kcal Atomic # 8 Polarization: -72.74 SS G_CDS: -2.12 Total: -74.86 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.49 kcal Total: -62.50 -1.42 -63.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138322651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.359 kcal (2) G-P(sol) polarization free energy of solvation -62.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds