Wall clock time and date at job start Fri Apr 10 2020 17:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48504 * 109.46889 * 239.99736 * 3 2 1 5 5 H 1.48501 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47193 * 120.00004 * 3 2 1 7 7 C 1.37871 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00103 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88804 * 303.88275 * 9 7 2 11 11 C 1.55150 * 111.00502 * 67.81009 * 9 7 2 12 12 C 1.54333 * 103.02600 * 153.38078 * 11 9 7 13 13 N 1.47026 * 107.26284 * 338.13809 * 12 11 9 14 14 C 1.34773 * 125.65023 * 178.84994 * 13 12 11 15 15 O 1.21279 * 120.00095 * 184.93752 * 14 13 12 16 16 C 1.50701 * 119.99684 * 4.93781 * 14 13 12 17 17 H 1.08995 * 109.67599 * 326.25016 * 16 14 13 18 18 C 1.53350 * 109.67492 * 205.75004 * 16 14 13 19 19 C 1.52917 * 108.67580 * 172.70021 * 18 16 14 20 20 N 1.45751 * 110.48856 * 50.75181 * 19 18 16 21 21 C 1.33353 * 124.10859 * 340.90978 * 20 19 18 22 22 O 1.21271 * 118.24638 * 182.26659 * 21 20 19 23 23 C 1.50182 * 123.50654 * 2.25783 * 21 20 19 24 24 C 1.47426 * 108.70342 * 358.58435 * 13 12 11 25 25 H 0.97001 * 119.99833 * 359.97438 * 1 2 3 26 26 H 0.96698 * 113.99752 * 56.11801 * 10 9 7 27 27 H 1.09001 * 110.71909 * 271.93751 * 11 9 7 28 28 H 1.09004 * 110.72213 * 35.03047 * 11 9 7 29 29 H 1.09000 * 109.99356 * 218.66410 * 12 11 9 30 30 H 1.08996 * 109.78161 * 97.49427 * 12 11 9 31 31 H 1.08998 * 109.60171 * 292.46105 * 18 16 14 32 32 H 1.09001 * 109.60133 * 52.94396 * 18 16 14 33 33 H 1.09003 * 109.29836 * 171.06735 * 19 18 16 34 34 H 1.09007 * 109.29821 * 290.44173 * 19 18 16 35 35 H 0.96996 * 117.94642 * 160.92017 * 20 19 18 36 36 H 1.08994 * 109.38694 * 222.26877 * 23 21 20 37 37 H 1.08996 * 109.41604 * 102.51562 * 23 21 20 38 38 H 1.08993 * 110.36726 * 143.19180 * 24 13 12 39 39 H 1.08997 * 110.36693 * 265.51957 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.3521 -2.5684 1.1082 11 6 0.4986 -2.7069 -1.3414 12 6 0.4004 -4.2432 -1.4507 13 7 1.4585 -4.8096 -0.6015 14 6 1.6921 -6.1228 -0.4085 15 8 2.5375 -6.4781 0.3853 16 6 0.9029 -7.1497 -1.1789 17 1 -0.1104 -6.7843 -1.3458 18 6 0.8544 -8.4630 -0.3887 19 6 -0.0983 -9.4263 -1.0979 20 7 0.2363 -9.5253 -2.5130 21 6 0.9678 -8.6267 -3.1731 22 8 1.1470 -8.7933 -4.3609 23 6 1.5815 -7.4193 -2.5242 24 6 2.2258 -3.7031 -0.0011 25 1 -0.4850 0.8401 0.0004 26 1 -0.2774 -1.8356 1.1505 27 1 -0.4932 -2.2567 -1.3009 28 1 1.0725 -2.2979 -2.1731 29 1 0.5492 -4.5535 -2.4849 30 1 -0.5758 -4.5764 -1.0984 31 1 1.8517 -8.9007 -0.3454 32 1 0.4934 -8.2690 0.6213 33 1 -0.0209 -10.4122 -0.6395 34 1 -1.1209 -9.0633 -0.9940 35 1 -0.0939 -10.2929 -3.0056 36 1 1.4526 -6.5542 -3.1746 37 1 2.6452 -7.5953 -2.3643 38 1 2.5191 -3.9542 1.0181 39 1 3.1048 -3.4793 -0.6055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163163788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:20 Heat of formation + Delta-G solvation = -128.705219 kcal Electronic energy + Delta-G solvation = -22921.202938 eV Core-core repulsion = 19442.121557 eV Total energy + Delta-G solvation = -3479.081381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69916 -39.34675 -37.48107 -36.26597 -34.39856 -33.21262 -32.18780 -30.04313 -29.67501 -28.40587 -25.93878 -24.67624 -23.24987 -22.10197 -19.88891 -19.34332 -18.81293 -17.48704 -17.30625 -16.83478 -16.38848 -15.53554 -15.13003 -15.01893 -14.86994 -14.38720 -14.25563 -14.00545 -13.56189 -13.37832 -13.11160 -12.43893 -12.17324 -11.97411 -11.93895 -11.70382 -11.41859 -11.38698 -11.21192 -11.14559 -10.90012 -10.66021 -10.54414 -10.21676 -10.10086 -9.50002 -9.31600 -9.31277 -8.72542 -8.27713 -8.07192 -6.34840 -4.42798 2.47197 2.87057 3.10527 3.18644 3.23869 3.26207 3.39548 4.22158 4.34225 4.49042 4.52636 4.64472 4.91226 5.01719 5.08152 5.11475 5.34404 5.44986 5.50011 5.59476 5.70794 5.75321 5.79210 5.95189 6.00345 6.21238 6.37319 6.54492 6.57921 6.80828 6.89463 7.09453 7.24429 7.26378 7.68515 7.92967 8.01900 8.04161 8.50580 8.59714 9.26405 9.41989 10.72887 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033781 B = 0.003979 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.665973 B = 7035.466965 C = 7241.297239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.250 3.750 10 O -0.585 6.585 11 C -0.140 4.140 12 C 0.098 3.902 13 N -0.603 5.603 14 C 0.529 3.471 15 O -0.551 6.551 16 C -0.108 4.108 17 H 0.098 0.902 18 C -0.118 4.118 19 C 0.110 3.890 20 N -0.721 5.721 21 C 0.527 3.473 22 O -0.558 6.558 23 C -0.123 4.123 24 C 0.118 3.882 25 H 0.270 0.730 26 H 0.386 0.614 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.399 0.601 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 -13.464 -2.899 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.209 3.791 10 O -0.395 6.395 11 C -0.179 4.179 12 C -0.025 4.025 13 N -0.335 5.335 14 C 0.316 3.684 15 O -0.430 6.430 16 C -0.129 4.129 17 H 0.116 0.884 18 C -0.156 4.156 19 C -0.014 4.014 20 N -0.373 5.373 21 C 0.314 3.686 22 O -0.436 6.436 23 C -0.163 4.163 24 C -0.004 4.004 25 H 0.080 0.920 26 H 0.238 0.762 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.234 0.766 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.091 0.909 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.390 -14.015 -2.827 14.496 hybrid contribution -0.195 1.238 -0.297 1.288 sum -2.585 -12.778 -3.124 13.406 Atomic orbital electron populations 1.69550 1.06019 1.27934 1.50296 1.24984 0.95016 0.99585 0.93334 0.86449 0.79538 0.81933 0.78926 1.20000 1.21077 1.19953 1.21448 0.93786 0.90221 1.52104 0.91657 1.19561 0.86026 0.90791 0.82720 1.86095 1.51052 1.52775 1.49560 1.23217 1.03186 0.89950 1.01519 1.22202 0.90099 0.97311 0.92849 1.48629 1.33033 1.04959 1.46878 1.19859 0.83758 0.81921 0.82824 1.90670 1.35541 1.80026 1.36730 1.21388 1.00862 0.95568 0.95123 0.88395 1.21737 1.01139 0.93194 0.99563 1.21450 0.98965 1.00734 0.80249 1.45481 1.54058 1.26255 1.11513 1.20025 0.77718 0.84086 0.86738 1.90763 1.60513 1.76689 1.15649 1.21572 1.01962 0.97071 0.95691 1.22421 0.94496 0.85291 0.98187 0.91969 0.76215 0.89811 0.91266 0.92739 0.92285 0.89786 0.89024 0.90064 0.91279 0.76599 0.87455 0.87473 0.90939 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.54 10.79 55.43 0.60 -21.95 16 2 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 3 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.59 8.25 -34.44 -0.28 -13.87 16 8 H 0.07 1.64 7.77 -52.49 -0.41 1.23 16 9 C 0.25 5.82 0.89 -89.62 -0.08 5.74 16 10 O -0.58 -14.56 13.18 -35.23 -0.46 -15.02 16 11 C -0.14 -2.86 5.64 -24.90 -0.14 -3.00 16 12 C 0.10 1.66 6.13 -3.06 -0.02 1.64 16 13 N -0.60 -11.16 3.33 -170.51 -0.57 -11.73 16 14 C 0.53 9.05 6.93 -10.99 -0.08 8.97 16 15 O -0.55 -11.12 16.50 5.56 0.09 -11.03 16 16 C -0.11 -1.33 2.16 -91.55 -0.20 -1.52 16 17 H 0.10 1.10 7.21 -51.93 -0.37 0.73 16 18 C -0.12 -1.19 4.74 -26.59 -0.13 -1.31 16 19 C 0.11 0.79 7.17 -4.49 -0.03 0.76 16 20 N -0.72 -6.56 5.45 -61.39 -0.33 -6.90 16 21 C 0.53 6.56 7.71 -11.87 -0.09 6.47 16 22 O -0.56 -9.05 17.78 5.56 0.10 -8.95 16 23 C -0.12 -1.48 5.34 -28.10 -0.15 -1.63 16 24 C 0.12 2.52 6.11 -2.52 -0.02 2.51 16 25 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 26 H 0.39 9.71 6.93 45.56 0.32 10.03 16 27 H 0.08 1.80 7.85 -51.93 -0.41 1.39 16 28 H 0.07 1.42 8.03 -51.93 -0.42 1.01 16 29 H 0.05 0.78 7.77 -51.93 -0.40 0.38 16 30 H 0.06 0.93 7.92 -51.93 -0.41 0.52 16 31 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 35 H 0.40 3.06 8.80 -40.82 -0.36 2.70 16 36 H 0.11 1.29 7.77 -51.93 -0.40 0.89 16 37 H 0.11 1.32 8.09 -51.93 -0.42 0.90 16 38 H 0.07 1.67 7.99 -51.93 -0.41 1.25 16 39 H 0.07 1.49 8.01 -51.93 -0.42 1.07 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -30.24 319.22 -7.04 -37.27 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -4.94 Total: 12.32 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -1.31 Total: 6.46 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -0.30 Total: -40.58 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.27 Total: -35.00 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.24 -7.04 -37.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163163788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.431 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds