Wall clock time and date at job start Fri Apr 10 2020 17:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48504 * 109.46889 * 239.99736 * 3 2 1 5 5 H 1.48501 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47193 * 120.00004 * 3 2 1 7 7 C 1.37871 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00103 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88804 * 303.88275 * 9 7 2 11 11 C 1.55150 * 111.00502 * 67.81009 * 9 7 2 12 12 C 1.54333 * 103.02600 * 153.38078 * 11 9 7 13 13 N 1.47026 * 107.26284 * 338.13809 * 12 11 9 14 14 C 1.34773 * 125.65023 * 178.84994 * 13 12 11 15 15 O 1.21279 * 120.00095 * 184.93752 * 14 13 12 16 16 C 1.50701 * 119.99684 * 4.93781 * 14 13 12 17 17 H 1.08995 * 109.67599 * 326.25016 * 16 14 13 18 18 C 1.53350 * 109.67492 * 205.75004 * 16 14 13 19 19 C 1.52917 * 108.67580 * 172.70021 * 18 16 14 20 20 N 1.45751 * 110.48856 * 50.75181 * 19 18 16 21 21 C 1.33353 * 124.10859 * 340.90978 * 20 19 18 22 22 O 1.21271 * 118.24638 * 182.26659 * 21 20 19 23 23 C 1.50182 * 123.50654 * 2.25783 * 21 20 19 24 24 C 1.47426 * 108.70342 * 358.58435 * 13 12 11 25 25 H 0.97001 * 119.99833 * 359.97438 * 1 2 3 26 26 H 0.96698 * 113.99752 * 56.11801 * 10 9 7 27 27 H 1.09001 * 110.71909 * 271.93751 * 11 9 7 28 28 H 1.09004 * 110.72213 * 35.03047 * 11 9 7 29 29 H 1.09000 * 109.99356 * 218.66410 * 12 11 9 30 30 H 1.08996 * 109.78161 * 97.49427 * 12 11 9 31 31 H 1.08998 * 109.60171 * 292.46105 * 18 16 14 32 32 H 1.09001 * 109.60133 * 52.94396 * 18 16 14 33 33 H 1.09003 * 109.29836 * 171.06735 * 19 18 16 34 34 H 1.09007 * 109.29821 * 290.44173 * 19 18 16 35 35 H 0.96996 * 117.94642 * 160.92017 * 20 19 18 36 36 H 1.08994 * 109.38694 * 222.26877 * 23 21 20 37 37 H 1.08996 * 109.41604 * 102.51562 * 23 21 20 38 38 H 1.08993 * 110.36726 * 143.19180 * 24 13 12 39 39 H 1.08997 * 110.36693 * 265.51957 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.3521 -2.5684 1.1082 11 6 0.4986 -2.7069 -1.3414 12 6 0.4004 -4.2432 -1.4507 13 7 1.4585 -4.8096 -0.6015 14 6 1.6921 -6.1228 -0.4085 15 8 2.5375 -6.4781 0.3853 16 6 0.9029 -7.1497 -1.1789 17 1 -0.1104 -6.7843 -1.3458 18 6 0.8544 -8.4630 -0.3887 19 6 -0.0983 -9.4263 -1.0979 20 7 0.2363 -9.5253 -2.5130 21 6 0.9678 -8.6267 -3.1731 22 8 1.1470 -8.7933 -4.3609 23 6 1.5815 -7.4193 -2.5242 24 6 2.2258 -3.7031 -0.0011 25 1 -0.4850 0.8401 0.0004 26 1 -0.2774 -1.8356 1.1505 27 1 -0.4932 -2.2567 -1.3009 28 1 1.0725 -2.2979 -2.1731 29 1 0.5492 -4.5535 -2.4849 30 1 -0.5758 -4.5764 -1.0984 31 1 1.8517 -8.9007 -0.3454 32 1 0.4934 -8.2690 0.6213 33 1 -0.0209 -10.4122 -0.6395 34 1 -1.1209 -9.0633 -0.9940 35 1 -0.0939 -10.2929 -3.0056 36 1 1.4526 -6.5542 -3.1746 37 1 2.6452 -7.5953 -2.3643 38 1 2.5191 -3.9542 1.0181 39 1 3.1048 -3.4793 -0.6055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163163788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:19 Heat of formation + Delta-G solvation = -152.443340 kcal Electronic energy + Delta-G solvation = -22922.232300 eV Core-core repulsion = 19442.121557 eV Total energy + Delta-G solvation = -3480.110743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77668 -40.65830 -39.04517 -37.28470 -36.11492 -34.20592 -34.12126 -31.52534 -30.66899 -30.03462 -27.47686 -25.92817 -24.33278 -23.44987 -21.57979 -20.41928 -20.02836 -19.16185 -18.40489 -18.16026 -17.38861 -16.94575 -16.67415 -16.41382 -16.23187 -15.81634 -15.44556 -15.11164 -14.79367 -14.70050 -14.47348 -13.89446 -13.73356 -13.57728 -13.21106 -13.07421 -12.88338 -12.76196 -12.62653 -12.48372 -12.27877 -12.10893 -12.05380 -11.85834 -11.36038 -11.29409 -10.70528 -10.57260 -10.14585 -10.07455 -9.57964 -8.25254 -6.39607 1.44031 1.46028 1.47719 1.52734 1.58879 2.00700 2.31122 2.40271 2.99892 3.31233 3.60386 3.62375 3.71763 3.82069 4.00201 4.11901 4.19532 4.33143 4.35355 4.42226 4.57707 4.61344 4.67273 4.72880 4.84915 4.90368 4.97026 5.16308 5.19482 5.29594 5.44545 5.53708 5.77734 5.83046 6.05813 6.26328 6.60137 6.65186 7.11133 7.15766 7.31984 7.45980 8.80826 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.033781 B = 0.003979 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.665973 B = 7035.466965 C = 7241.297239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.038 3.962 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.564 4.564 8 H 0.056 0.944 9 C 0.235 3.765 10 O -0.595 6.595 11 C -0.132 4.132 12 C 0.105 3.895 13 N -0.608 5.608 14 C 0.526 3.474 15 O -0.586 6.586 16 C -0.096 4.096 17 H 0.117 0.883 18 C -0.118 4.118 19 C 0.114 3.886 20 N -0.707 5.707 21 C 0.529 3.471 22 O -0.601 6.601 23 C -0.119 4.119 24 C 0.123 3.877 25 H 0.273 0.727 26 H 0.381 0.619 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.409 0.591 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.047 0.953 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 -14.666 -3.491 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.164 4.164 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.602 4.602 8 H 0.075 0.925 9 C 0.195 3.805 10 O -0.405 6.405 11 C -0.171 4.171 12 C -0.016 4.016 13 N -0.340 5.340 14 C 0.316 3.684 15 O -0.467 6.467 16 C -0.117 4.117 17 H 0.135 0.865 18 C -0.156 4.156 19 C -0.009 4.009 20 N -0.358 5.358 21 C 0.316 3.684 22 O -0.484 6.484 23 C -0.159 4.159 24 C 0.000 4.000 25 H 0.082 0.918 26 H 0.233 0.767 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.246 0.754 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.066 0.934 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.599 -15.252 -3.404 16.037 hybrid contribution 0.191 1.604 -0.021 1.615 sum -3.409 -13.649 -3.425 14.479 Atomic orbital electron populations 1.69611 1.06669 1.28557 1.50102 1.25586 0.95808 1.01992 0.92972 0.85595 0.78474 0.78806 0.78646 1.19598 1.20465 1.20375 1.21713 0.93722 0.91755 1.53014 0.92525 1.19747 0.86410 0.90795 0.83582 1.86081 1.51198 1.52503 1.50714 1.23006 1.01804 0.92747 0.99530 1.22220 0.90380 0.94540 0.94506 1.48707 1.33176 1.05025 1.47068 1.20743 0.83432 0.81866 0.82387 1.90652 1.37191 1.80444 1.38397 1.21396 1.00644 0.95026 0.94644 0.86464 1.21767 1.01586 0.92515 0.99774 1.21622 0.98958 1.01705 0.78572 1.45441 1.52449 1.25550 1.12337 1.19956 0.77870 0.84386 0.86143 1.90752 1.62440 1.77732 1.17438 1.21508 1.01652 0.97344 0.95400 1.22156 0.94650 0.86060 0.97160 0.91788 0.76741 0.90994 0.91742 0.89378 0.90538 0.90844 0.88882 0.86928 0.89042 0.75409 0.87337 0.88116 0.93425 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.66 10.79 21.45 0.23 -45.43 16 2 C 0.04 1.88 5.30 84.65 0.45 2.32 16 3 Si 0.96 40.41 29.54 68.60 2.03 42.44 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.56 -28.97 8.25 25.60 0.21 -28.76 16 8 H 0.06 2.92 7.77 -2.91 -0.02 2.89 16 9 C 0.23 11.07 0.89 -10.15 -0.01 11.06 16 10 O -0.59 -30.06 13.18 -148.98 -1.96 -32.02 16 11 C -0.13 -5.34 5.64 31.78 0.18 -5.16 16 12 C 0.11 3.35 6.13 86.73 0.53 3.88 16 13 N -0.61 -21.99 3.33 -811.77 -2.70 -24.69 16 14 C 0.53 17.45 6.93 87.66 0.61 18.06 16 15 O -0.59 -23.66 16.50 -3.03 -0.05 -23.71 16 16 C -0.10 -2.13 2.16 -11.40 -0.02 -2.15 16 17 H 0.12 2.19 7.21 -2.39 -0.02 2.18 16 18 C -0.12 -2.06 4.74 30.68 0.15 -1.91 16 19 C 0.11 1.16 7.17 86.49 0.62 1.78 16 20 N -0.71 -10.54 5.45 -467.32 -2.55 -13.09 16 21 C 0.53 12.04 7.71 87.72 0.68 12.72 16 22 O -0.60 -18.77 17.78 -3.00 -0.05 -18.83 16 23 C -0.12 -2.65 5.34 29.71 0.16 -2.49 16 24 C 0.12 5.35 6.11 86.86 0.53 5.88 16 25 H 0.27 13.07 8.31 -92.71 -0.77 12.29 16 26 H 0.38 19.53 6.93 -74.06 -0.51 19.01 16 27 H 0.07 3.06 7.85 -2.39 -0.02 3.04 16 28 H 0.06 2.62 8.03 -2.39 -0.02 2.60 16 29 H 0.09 2.25 7.77 -2.39 -0.02 2.23 16 30 H 0.08 2.19 7.92 -2.39 -0.02 2.17 16 31 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 0.65 8.14 -2.38 -0.02 0.64 16 35 H 0.41 4.92 8.80 -92.71 -0.82 4.11 16 36 H 0.11 2.40 7.77 -2.39 -0.02 2.38 16 37 H 0.10 2.39 8.09 -2.39 -0.02 2.37 16 38 H 0.05 2.27 7.99 -2.39 -0.02 2.25 16 39 H 0.07 3.10 8.01 -2.39 -0.02 3.08 16 Total: -1.00 -66.35 319.22 -1.23 -67.58 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.25 Total: 32.54 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 4.08 Total: 15.23 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -5.01 Total: -83.21 kcal Atomic # 8 Polarization: -72.50 SS G_CDS: -2.07 Total: -74.56 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -66.35 -1.23 -67.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163163788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.866 kcal (2) G-P(sol) polarization free energy of solvation -66.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds