Wall clock time and date at job start Fri Apr 10 2020 17:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00249 * 2 1 4 4 H 1.48498 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46766 * 299.99618 * 3 2 1 6 6 H 1.48499 * 109.47053 * 59.99733 * 3 2 1 7 7 C 1.37883 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99768 * 359.97438 * 7 2 1 10 10 O 1.42894 * 110.89125 * 300.70515 * 9 7 2 11 11 C 1.55159 * 111.00109 * 64.58720 * 9 7 2 12 12 C 1.54327 * 102.94129 * 153.60925 * 11 9 7 13 13 N 1.47023 * 107.27243 * 337.80925 * 12 11 9 14 14 C 1.34777 * 125.64656 * 178.97641 * 13 12 11 15 15 O 1.21279 * 120.00503 * 354.96169 * 14 13 12 16 16 C 1.50708 * 119.99802 * 174.95913 * 14 13 12 17 17 H 1.09002 * 109.66652 * 26.98041 * 16 14 13 18 18 C 1.53343 * 109.67382 * 147.47884 * 16 14 13 19 19 C 1.52918 * 108.67640 * 187.26515 * 18 16 14 20 20 N 1.45758 * 110.48403 * 309.24841 * 19 18 16 21 21 C 1.33347 * 124.10763 * 19.05325 * 20 19 18 22 22 O 1.21284 * 118.24579 * 177.81978 * 21 20 19 23 23 C 1.50170 * 123.51210 * 357.81867 * 21 20 19 24 24 C 1.47521 * 108.71446 * 358.94043 * 13 12 11 25 25 H 0.96998 * 119.99842 * 0.02562 * 1 2 3 26 26 H 0.96695 * 113.99916 * 59.29680 * 10 9 7 27 27 H 1.08996 * 110.71719 * 271.97045 * 11 9 7 28 28 H 1.08999 * 110.72226 * 35.24801 * 11 9 7 29 29 H 1.09003 * 109.87939 * 97.22200 * 12 11 9 30 30 H 1.08998 * 109.88355 * 218.23193 * 12 11 9 31 31 H 1.09000 * 109.60192 * 307.02460 * 18 16 14 32 32 H 1.09001 * 109.59849 * 67.50684 * 18 16 14 33 33 H 1.09000 * 109.29946 * 69.55580 * 19 18 16 34 34 H 1.08996 * 109.29902 * 189.14144 * 19 18 16 35 35 H 0.97001 * 117.94377 * 199.06880 * 20 19 18 36 36 H 1.09001 * 109.38804 * 257.42251 * 23 21 20 37 37 H 1.08999 * 109.41729 * 137.68362 * 23 21 20 38 38 H 1.09008 * 110.37079 * 265.30675 * 24 13 12 39 39 H 1.09001 * 110.41441 * 142.95689 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 0.4063 -2.5988 1.1499 11 6 0.4341 -2.6708 -1.3062 12 6 0.3256 -4.2037 -1.4474 13 7 1.4262 -4.7926 -0.6705 14 6 1.6672 -6.1106 -0.5245 15 8 0.8923 -6.9232 -0.9827 16 6 2.8997 -6.5745 0.2083 17 1 3.2050 -5.8163 0.9294 18 6 2.6022 -7.8903 0.9374 19 6 3.8023 -8.2455 1.8161 20 7 5.0357 -8.1902 1.0415 21 6 5.1633 -7.5408 -0.1162 22 8 6.2513 -7.5309 -0.6519 23 6 4.0318 -6.8210 -0.7920 24 6 2.2238 -3.7021 -0.0780 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2523 -1.8938 1.2161 27 1 -0.5540 -2.2219 -1.2054 28 1 0.9688 -2.2424 -2.1539 29 1 -0.6311 -4.5455 -1.0524 30 1 0.4160 -4.4868 -2.4961 31 1 1.7155 -7.7710 1.5600 32 1 2.4357 -8.6830 0.2079 33 1 3.8645 -7.5387 2.6436 34 1 3.6735 -9.2529 2.2116 35 1 5.8125 -8.6552 1.3899 36 1 3.6595 -7.4269 -1.6181 37 1 4.3887 -5.8659 -1.1774 38 1 3.0726 -3.4618 -0.7183 39 1 2.5661 -3.9798 0.9188 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163163791.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:23 Heat of formation + Delta-G solvation = -128.721827 kcal Electronic energy + Delta-G solvation = -23023.381888 eV Core-core repulsion = 19544.299787 eV Total energy + Delta-G solvation = -3479.082101 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.65508 -39.33870 -37.49435 -36.24530 -34.30602 -33.21547 -32.26235 -30.07529 -29.67549 -28.40196 -25.51836 -25.02100 -23.44501 -21.80784 -19.94940 -19.38169 -18.75584 -17.47793 -17.27381 -16.73675 -16.32977 -15.67701 -15.14091 -15.01618 -14.88815 -14.35506 -14.14685 -13.94728 -13.50846 -13.37787 -12.99635 -12.53638 -12.29985 -12.05006 -11.93509 -11.76661 -11.43728 -11.31179 -11.12457 -11.06680 -10.88831 -10.64837 -10.50303 -10.20540 -10.09539 -9.57769 -9.29126 -9.25653 -8.76135 -8.29349 -8.09225 -6.36641 -4.45349 2.52720 2.87594 3.13950 3.15655 3.23595 3.26649 3.38921 4.19226 4.39483 4.53781 4.57837 4.70001 4.89816 5.04577 5.13457 5.16975 5.37555 5.51310 5.52960 5.65579 5.76894 5.79319 5.90471 5.93429 6.02315 6.21587 6.23367 6.47532 6.59952 6.83172 6.89265 7.14944 7.22575 7.27638 7.65772 7.89153 8.01067 8.07712 8.50304 8.57269 9.23025 9.33035 10.70985 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.004635 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.804818 B = 6040.133232 C = 6641.342990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.585 6.585 11 C -0.139 4.139 12 C 0.108 3.892 13 N -0.603 5.603 14 C 0.530 3.470 15 O -0.556 6.556 16 C -0.109 4.109 17 H 0.101 0.899 18 C -0.118 4.118 19 C 0.110 3.890 20 N -0.721 5.721 21 C 0.528 3.472 22 O -0.558 6.558 23 C -0.122 4.122 24 C 0.109 3.891 25 H 0.269 0.731 26 H 0.385 0.615 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.399 0.601 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.031 -11.059 2.779 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.177 4.177 12 C -0.015 4.015 13 N -0.334 5.334 14 C 0.318 3.682 15 O -0.436 6.436 16 C -0.131 4.131 17 H 0.119 0.881 18 C -0.156 4.156 19 C -0.014 4.014 20 N -0.373 5.373 21 C 0.315 3.685 22 O -0.437 6.437 23 C -0.162 4.162 24 C -0.013 4.013 25 H 0.079 0.921 26 H 0.236 0.764 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.191 -11.831 2.278 12.756 hybrid contribution 0.210 1.390 0.082 1.408 sum 4.401 -10.441 2.360 11.574 Atomic orbital electron populations 1.69656 1.06025 1.27719 1.49971 1.24990 0.94997 0.99607 0.93338 0.86363 0.80137 0.82709 0.77783 1.19546 1.20785 1.20747 1.21478 0.93729 0.90142 1.52294 0.91577 1.19568 0.86483 0.90552 0.82524 1.86080 1.51525 1.55004 1.46804 1.23221 1.03165 0.90231 1.01108 1.22059 0.89554 0.95737 0.94114 1.48671 1.30013 1.04924 1.49788 1.19886 0.86768 0.81142 0.80418 1.90654 1.48882 1.52868 1.51168 1.21405 0.93981 0.99429 0.98278 0.88104 1.21739 0.97762 0.96623 0.99517 1.21455 0.83549 1.02397 0.93991 1.45479 1.14741 1.54081 1.23006 1.20015 0.89754 0.78190 0.80565 1.90764 1.27361 1.61994 1.63534 1.21559 0.92857 1.02998 0.98791 1.22581 0.94703 0.86747 0.97276 0.92114 0.76405 0.89674 0.91358 0.92344 0.92872 0.89134 0.89815 0.91129 0.90091 0.76594 0.87510 0.87385 0.90642 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.24 10.76 55.43 0.60 -21.65 16 2 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 3 Si 0.90 19.39 29.54 -169.99 -5.02 14.37 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.13 8.25 -34.44 -0.28 -13.42 16 8 H 0.07 1.59 7.78 -52.49 -0.41 1.18 16 9 C 0.25 5.60 0.88 -89.62 -0.08 5.52 16 10 O -0.58 -14.01 13.17 -35.23 -0.46 -14.47 16 11 C -0.14 -2.92 5.51 -24.89 -0.14 -3.06 16 12 C 0.11 2.07 6.87 -3.06 -0.02 2.05 16 13 N -0.60 -11.16 3.33 -170.43 -0.57 -11.72 16 14 C 0.53 9.10 6.86 -10.98 -0.08 9.03 16 15 O -0.56 -10.98 16.72 5.56 0.09 -10.89 16 16 C -0.11 -1.42 2.28 -91.55 -0.21 -1.63 16 17 H 0.10 1.27 6.42 -51.93 -0.33 0.94 16 18 C -0.12 -1.24 4.83 -26.60 -0.13 -1.37 16 19 C 0.11 0.86 7.17 -4.48 -0.03 0.83 16 20 N -0.72 -7.05 5.45 -61.39 -0.33 -7.38 16 21 C 0.53 6.93 7.71 -11.88 -0.09 6.83 16 22 O -0.56 -9.42 17.78 5.55 0.10 -9.32 16 23 C -0.12 -1.55 5.34 -28.10 -0.15 -1.70 16 24 C 0.11 2.08 5.75 -2.47 -0.01 2.06 16 25 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 26 H 0.38 9.42 7.25 45.56 0.33 9.75 16 27 H 0.08 1.90 7.68 -51.93 -0.40 1.50 16 28 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.40 3.31 8.80 -40.82 -0.36 2.95 16 36 H 0.11 1.36 8.09 -51.93 -0.42 0.94 16 37 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.08 1.36 8.03 -51.92 -0.42 0.94 16 39 H 0.07 1.26 6.87 -51.93 -0.36 0.91 16 LS Contribution 319.00 15.07 4.81 4.81 Total: -1.00 -29.57 319.00 -6.98 -36.55 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -4.87 Total: 12.85 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -1.32 Total: 6.86 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: -0.31 Total: -40.76 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.27 Total: -34.68 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.57 -6.98 -36.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163163791.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.173 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds