Wall clock time and date at job start Fri Apr 10 2020 17:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00249 * 2 1 4 4 H 1.48498 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46766 * 299.99618 * 3 2 1 6 6 H 1.48499 * 109.47053 * 59.99733 * 3 2 1 7 7 C 1.37883 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99768 * 359.97438 * 7 2 1 10 10 O 1.42894 * 110.89125 * 300.70515 * 9 7 2 11 11 C 1.55159 * 111.00109 * 64.58720 * 9 7 2 12 12 C 1.54327 * 102.94129 * 153.60925 * 11 9 7 13 13 N 1.47023 * 107.27243 * 337.80925 * 12 11 9 14 14 C 1.34777 * 125.64656 * 178.97641 * 13 12 11 15 15 O 1.21279 * 120.00503 * 354.96169 * 14 13 12 16 16 C 1.50708 * 119.99802 * 174.95913 * 14 13 12 17 17 H 1.09002 * 109.66652 * 26.98041 * 16 14 13 18 18 C 1.53343 * 109.67382 * 147.47884 * 16 14 13 19 19 C 1.52918 * 108.67640 * 187.26515 * 18 16 14 20 20 N 1.45758 * 110.48403 * 309.24841 * 19 18 16 21 21 C 1.33347 * 124.10763 * 19.05325 * 20 19 18 22 22 O 1.21284 * 118.24579 * 177.81978 * 21 20 19 23 23 C 1.50170 * 123.51210 * 357.81867 * 21 20 19 24 24 C 1.47521 * 108.71446 * 358.94043 * 13 12 11 25 25 H 0.96998 * 119.99842 * 0.02562 * 1 2 3 26 26 H 0.96695 * 113.99916 * 59.29680 * 10 9 7 27 27 H 1.08996 * 110.71719 * 271.97045 * 11 9 7 28 28 H 1.08999 * 110.72226 * 35.24801 * 11 9 7 29 29 H 1.09003 * 109.87939 * 97.22200 * 12 11 9 30 30 H 1.08998 * 109.88355 * 218.23193 * 12 11 9 31 31 H 1.09000 * 109.60192 * 307.02460 * 18 16 14 32 32 H 1.09001 * 109.59849 * 67.50684 * 18 16 14 33 33 H 1.09000 * 109.29946 * 69.55580 * 19 18 16 34 34 H 1.08996 * 109.29902 * 189.14144 * 19 18 16 35 35 H 0.97001 * 117.94377 * 199.06880 * 20 19 18 36 36 H 1.09001 * 109.38804 * 257.42251 * 23 21 20 37 37 H 1.08999 * 109.41729 * 137.68362 * 23 21 20 38 38 H 1.09008 * 110.37079 * 265.30675 * 24 13 12 39 39 H 1.09001 * 110.41441 * 142.95689 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 0.4063 -2.5988 1.1499 11 6 0.4341 -2.6708 -1.3062 12 6 0.3256 -4.2037 -1.4474 13 7 1.4262 -4.7926 -0.6705 14 6 1.6672 -6.1106 -0.5245 15 8 0.8923 -6.9232 -0.9827 16 6 2.8997 -6.5745 0.2083 17 1 3.2050 -5.8163 0.9294 18 6 2.6022 -7.8903 0.9374 19 6 3.8023 -8.2455 1.8161 20 7 5.0357 -8.1902 1.0415 21 6 5.1633 -7.5408 -0.1162 22 8 6.2513 -7.5309 -0.6519 23 6 4.0318 -6.8210 -0.7920 24 6 2.2238 -3.7021 -0.0780 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2523 -1.8938 1.2161 27 1 -0.5540 -2.2219 -1.2054 28 1 0.9688 -2.2424 -2.1539 29 1 -0.6311 -4.5455 -1.0524 30 1 0.4160 -4.4868 -2.4961 31 1 1.7155 -7.7710 1.5600 32 1 2.4357 -8.6830 0.2079 33 1 3.8645 -7.5387 2.6436 34 1 3.6735 -9.2529 2.2116 35 1 5.8125 -8.6552 1.3899 36 1 3.6595 -7.4269 -1.6181 37 1 4.3887 -5.8659 -1.1774 38 1 3.0726 -3.4618 -0.7183 39 1 2.5661 -3.9798 0.9188 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163163791.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:22 Heat of formation + Delta-G solvation = -151.463169 kcal Electronic energy + Delta-G solvation = -23024.368027 eV Core-core repulsion = 19544.299787 eV Total energy + Delta-G solvation = -3480.068240 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77833 -40.66679 -39.05241 -37.30427 -36.00295 -34.24107 -34.14382 -31.57826 -30.67436 -30.05358 -27.02040 -26.37346 -24.47152 -23.20204 -21.66067 -20.46048 -20.00289 -19.11778 -18.34103 -18.15384 -17.36098 -17.01893 -16.85749 -16.42574 -16.16654 -15.77559 -15.36959 -15.09795 -14.81546 -14.65290 -14.43389 -13.96704 -13.83990 -13.62982 -13.20949 -13.01850 -12.90089 -12.74860 -12.61330 -12.45442 -12.26018 -12.08561 -12.02998 -11.86484 -11.45584 -11.18735 -10.70304 -10.56928 -10.12134 -10.08283 -9.61214 -8.22188 -6.36640 1.43504 1.46071 1.48990 1.57363 1.58584 1.99961 2.30834 2.41592 3.03887 3.29696 3.58999 3.63658 3.71519 3.80092 4.00515 4.15093 4.22680 4.26460 4.31881 4.41581 4.55242 4.63481 4.65390 4.71398 4.82251 4.90056 4.95374 5.16069 5.17803 5.31147 5.44742 5.51582 5.79866 5.82570 6.06758 6.25593 6.55644 6.70079 7.09391 7.15156 7.34123 7.42337 8.84104 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022291 B = 0.004635 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.804818 B = 6040.133232 C = 6641.342990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.034 3.966 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.555 4.555 8 H 0.066 0.934 9 C 0.232 3.768 10 O -0.592 6.592 11 C -0.129 4.129 12 C 0.112 3.888 13 N -0.607 5.607 14 C 0.529 3.471 15 O -0.582 6.582 16 C -0.101 4.101 17 H 0.109 0.891 18 C -0.117 4.117 19 C 0.113 3.887 20 N -0.707 5.707 21 C 0.528 3.472 22 O -0.602 6.602 23 C -0.118 4.118 24 C 0.119 3.881 25 H 0.269 0.731 26 H 0.379 0.621 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.409 0.591 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 -11.896 3.784 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.167 4.167 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.593 4.593 8 H 0.084 0.916 9 C 0.192 3.808 10 O -0.401 6.401 11 C -0.167 4.167 12 C -0.010 4.010 13 N -0.339 5.339 14 C 0.319 3.681 15 O -0.463 6.463 16 C -0.122 4.122 17 H 0.127 0.873 18 C -0.155 4.155 19 C -0.010 4.010 20 N -0.358 5.358 21 C 0.316 3.684 22 O -0.484 6.484 23 C -0.158 4.158 24 C -0.003 4.003 25 H 0.079 0.921 26 H 0.229 0.771 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.133 0.867 35 H 0.246 0.754 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.198 -12.696 3.320 14.115 hybrid contribution -0.177 1.627 -0.213 1.650 sum 5.021 -11.070 3.107 12.546 Atomic orbital electron populations 1.69738 1.06879 1.28237 1.50319 1.25622 0.95688 1.02155 0.93209 0.85503 0.79137 0.79487 0.77437 1.19248 1.20803 1.20852 1.21756 0.93926 0.91243 1.52353 0.91616 1.19806 0.87022 0.91528 0.82436 1.86072 1.51573 1.54717 1.47708 1.23018 1.01814 0.91468 1.00441 1.21918 0.89702 0.94421 0.94989 1.48734 1.29737 1.05493 1.49914 1.20609 0.87540 0.80163 0.79809 1.90641 1.50169 1.53265 1.52256 1.21421 0.91792 1.00958 0.98066 0.87266 1.21772 0.99296 0.94845 0.99628 1.21639 0.81201 1.04949 0.93175 1.45441 1.15937 1.52543 1.21867 1.19973 0.88935 0.78268 0.81243 1.90750 1.28762 1.63880 1.65018 1.21488 0.92645 1.02927 0.98718 1.22458 0.94021 0.85561 0.98286 0.92106 0.77119 0.91536 0.91782 0.93231 0.91686 0.88815 0.90414 0.89380 0.86683 0.75396 0.87726 0.87699 0.89481 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.56 10.76 21.45 0.23 -45.33 16 2 C 0.03 1.67 5.29 84.66 0.45 2.11 16 3 Si 0.96 39.39 29.54 68.60 2.03 41.42 16 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.55 -26.81 8.25 25.60 0.21 -26.60 16 8 H 0.07 3.11 7.78 -2.91 -0.02 3.09 16 9 C 0.23 10.37 0.88 -10.15 -0.01 10.36 16 10 O -0.59 -28.39 13.17 -148.98 -1.96 -30.36 16 11 C -0.13 -5.46 5.51 31.78 0.18 -5.28 16 12 C 0.11 4.30 6.87 86.73 0.60 4.89 16 13 N -0.61 -21.88 3.33 -811.51 -2.70 -24.58 16 14 C 0.53 17.49 6.86 87.66 0.60 18.09 16 15 O -0.58 -22.46 16.72 -3.03 -0.05 -22.51 16 16 C -0.10 -2.43 2.28 -11.40 -0.03 -2.45 16 17 H 0.11 2.47 6.42 -2.39 -0.02 2.45 16 18 C -0.12 -2.15 4.83 30.68 0.15 -2.00 16 19 C 0.11 1.33 7.17 86.49 0.62 1.95 16 20 N -0.71 -11.75 5.45 -467.33 -2.55 -14.30 16 21 C 0.53 12.98 7.71 87.71 0.68 13.65 16 22 O -0.60 -19.81 17.78 -3.04 -0.05 -19.87 16 23 C -0.12 -2.83 5.34 29.70 0.16 -2.67 16 24 C 0.12 4.37 5.75 86.84 0.50 4.87 16 25 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 26 H 0.38 18.84 7.25 -74.06 -0.54 18.30 16 27 H 0.07 3.04 7.68 -2.39 -0.02 3.02 16 28 H 0.06 2.72 8.03 -2.39 -0.02 2.70 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.41 5.56 8.80 -92.71 -0.82 4.75 16 36 H 0.10 2.57 8.09 -2.39 -0.02 2.55 16 37 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.09 3.00 8.03 -2.38 -0.02 2.98 16 39 H 0.08 2.79 6.87 -2.39 -0.02 2.78 16 Total: -1.00 -62.88 319.00 -1.23 -64.11 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.27 Total: 34.47 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 4.10 Total: 16.94 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -5.02 Total: -84.20 kcal Atomic # 8 Polarization: -70.67 SS G_CDS: -2.07 Total: -72.73 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -62.88 -1.23 -64.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163163791.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.354 kcal (2) G-P(sol) polarization free energy of solvation -62.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds