Wall clock time and date at job start Fri Apr 10 2020 17:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.47362 * 180.02562 * 16 14 13 18 18 C 1.53249 * 109.62285 * 294.63779 * 17 16 14 19 19 C 1.50621 * 109.13539 * 184.82950 * 18 17 16 20 20 O 1.21222 * 119.27216 * 208.94915 * 19 18 17 21 21 N 1.34142 * 121.36727 * 28.76650 * 19 18 17 22 22 C 1.34141 * 122.59438 * 359.63556 * 21 19 18 23 23 O 1.21224 * 119.36323 * 180.54501 * 22 21 19 24 24 C 1.50588 * 121.27376 * 0.52379 * 22 21 19 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.08995 * 109.47634 * 300.00249 * 16 14 13 33 33 H 1.09010 * 109.46880 * 60.00413 * 16 14 13 34 34 H 1.09004 * 109.61846 * 54.99909 * 17 16 14 35 35 H 1.08998 * 109.51852 * 304.56444 * 18 17 16 36 36 H 1.09002 * 109.52106 * 64.75112 * 18 17 16 37 37 H 0.97006 * 118.69969 * 179.66038 * 21 19 18 38 38 H 1.09003 * 109.51743 * 211.01694 * 24 22 21 39 39 H 1.09003 * 109.52156 * 90.83749 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 6 -1.3829 3.8934 2.5217 18 6 -1.4025 5.0079 1.4700 19 6 -2.7750 5.6271 1.4322 20 8 -3.1780 6.1124 0.3971 21 7 -3.5612 5.6491 2.5188 22 6 -3.1853 5.1219 3.6936 23 8 -3.9469 5.1655 4.6356 24 6 -1.8355 4.4764 3.8646 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 0.0673 2.6129 3.4685 33 1 0.7277 4.1529 2.8680 34 1 -2.0620 3.0952 2.2217 35 1 -0.6687 5.7698 1.7331 36 1 -1.1610 4.5905 0.4924 37 1 -4.4364 6.0623 2.4523 38 1 -1.9046 3.6781 4.6036 39 1 -1.1148 5.2225 4.1993 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182178969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:38 Heat of formation + Delta-G solvation = -130.482155 kcal Electronic energy + Delta-G solvation = -22503.444020 eV Core-core repulsion = 19024.285585 eV Total energy + Delta-G solvation = -3479.158435 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.61137 -39.29946 -38.92598 -36.28509 -35.07712 -34.28260 -32.46526 -31.10182 -29.00077 -28.83312 -26.79735 -23.37714 -23.28204 -22.27275 -20.12534 -19.57449 -19.35586 -17.96308 -17.59062 -16.94323 -16.28912 -15.82151 -15.38954 -15.32808 -14.76592 -14.60480 -14.37957 -14.16952 -14.11944 -13.18400 -12.85829 -12.59128 -12.55768 -12.24882 -11.87552 -11.57908 -11.31551 -11.28097 -11.06977 -11.00091 -10.86397 -10.60325 -10.42101 -10.34744 -10.28629 -10.21169 -9.67861 -9.11132 -9.02663 -8.55201 -7.89270 -6.17231 -4.26980 1.34333 2.58722 2.64844 3.19989 3.27093 3.29020 3.30525 3.75369 3.96175 4.29467 4.31989 4.43301 4.61429 4.88843 5.09341 5.14310 5.15863 5.30823 5.40762 5.54795 5.67097 5.82173 5.95425 6.00475 6.34257 6.39991 6.60659 6.68258 6.97874 7.14396 7.18296 7.30799 7.38799 7.56484 7.66300 7.67227 7.84602 8.13316 8.59140 8.72043 9.05331 9.40791 10.87978 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029685 B = 0.003641 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.014372 B = 7688.769371 C = 7749.391833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.707 5.707 14 C 0.497 3.503 15 O -0.548 6.548 16 C -0.139 4.139 17 C -0.074 4.074 18 C -0.144 4.144 19 C 0.527 3.473 20 O -0.502 6.502 21 N -0.678 5.678 22 C 0.530 3.470 23 O -0.511 6.511 24 C -0.140 4.140 25 H 0.038 0.962 26 H 0.021 0.979 27 H 0.050 0.950 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.264 0.736 31 H 0.389 0.611 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.139 0.861 37 H 0.409 0.591 38 H 0.115 0.885 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.465 6.824 12.127 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.354 5.354 14 C 0.282 3.718 15 O -0.427 6.427 16 C -0.179 4.179 17 C -0.093 4.093 18 C -0.183 4.183 19 C 0.317 3.683 20 O -0.374 6.374 21 N -0.343 5.343 22 C 0.319 3.681 23 O -0.385 6.385 24 C -0.180 4.180 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.157 0.843 37 H 0.248 0.752 38 H 0.134 0.866 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.365 6.863 11.203 15.061 hybrid contribution 0.946 0.110 0.238 0.982 sum -6.419 6.973 11.441 14.857 Atomic orbital electron populations 1.21835 0.98324 0.98032 1.01192 1.21934 0.92611 0.99857 1.02269 1.18794 0.94204 0.89186 0.81048 0.93219 1.21262 0.90752 1.39083 1.06283 0.92065 1.24885 0.98578 0.94791 0.95404 1.69895 1.35068 1.37546 1.09329 0.86419 0.84905 0.77795 0.78128 1.19758 1.20892 1.20880 1.46520 1.14612 1.55692 1.18561 1.20280 0.82891 0.79575 0.89045 1.90661 1.51283 1.60020 1.40771 1.21732 0.96106 1.01773 0.98285 1.21055 0.98149 0.98014 0.92075 1.22243 0.91996 0.98522 1.05551 1.21206 0.87804 0.77337 0.81957 1.90784 1.73912 1.43105 1.29614 1.44944 1.21487 1.55647 1.12222 1.20972 0.89716 0.76185 0.81236 1.90780 1.53804 1.55214 1.38680 1.22068 0.93041 1.02597 1.00288 0.94287 0.95948 0.93121 0.95094 0.88349 0.92582 0.77931 0.88535 0.88712 0.88633 0.87522 0.84302 0.75235 0.86639 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.51 37.16 0.32 -2.53 16 2 C -0.13 -2.93 5.45 -26.73 -0.15 -3.07 16 3 C 0.27 6.26 2.24 -69.08 -0.15 6.10 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.96 16 5 C -0.54 -13.33 8.73 -34.44 -0.30 -13.63 16 6 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.87 11.29 55.43 0.63 -23.25 16 9 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.71 -12.57 5.02 -54.94 -0.28 -12.85 16 14 C 0.50 7.85 6.15 -10.99 -0.07 7.78 16 15 O -0.55 -10.58 11.15 5.56 0.06 -10.51 16 16 C -0.14 -1.31 5.19 -27.88 -0.14 -1.46 16 17 C -0.07 -0.68 1.95 -90.37 -0.18 -0.85 16 18 C -0.14 -1.54 5.06 -27.79 -0.14 -1.68 16 19 C 0.53 6.24 7.74 -11.31 -0.09 6.15 16 20 O -0.50 -7.86 17.87 5.61 0.10 -7.76 16 21 N -0.68 -6.73 5.09 -11.74 -0.06 -6.79 16 22 C 0.53 5.18 7.74 -11.32 -0.09 5.09 16 23 O -0.51 -6.57 17.88 5.61 0.10 -6.47 16 24 C -0.14 -0.97 5.37 -27.82 -0.15 -1.12 16 25 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.39 5.88 8.54 -40.82 -0.35 5.53 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.69 8.14 -51.92 -0.42 0.26 16 34 H 0.10 1.04 7.96 -51.93 -0.41 0.63 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.14 1.97 6.11 -51.93 -0.32 1.65 16 37 H 0.41 3.74 8.79 -40.82 -0.36 3.38 16 38 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -31.84 320.04 -6.22 -38.05 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.34 Total: 7.52 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.23 Total: 2.40 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.29 Total: -42.89 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.26 Total: -24.75 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.84 -6.22 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182178969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.428 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds