Wall clock time and date at job start Fri Apr 10 2020 17:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.47362 * 180.02562 * 16 14 13 18 18 C 1.53249 * 109.62285 * 294.63779 * 17 16 14 19 19 C 1.50621 * 109.13539 * 184.82950 * 18 17 16 20 20 O 1.21222 * 119.27216 * 208.94915 * 19 18 17 21 21 N 1.34142 * 121.36727 * 28.76650 * 19 18 17 22 22 C 1.34141 * 122.59438 * 359.63556 * 21 19 18 23 23 O 1.21224 * 119.36323 * 180.54501 * 22 21 19 24 24 C 1.50588 * 121.27376 * 0.52379 * 22 21 19 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.08995 * 109.47634 * 300.00249 * 16 14 13 33 33 H 1.09010 * 109.46880 * 60.00413 * 16 14 13 34 34 H 1.09004 * 109.61846 * 54.99909 * 17 16 14 35 35 H 1.08998 * 109.51852 * 304.56444 * 18 17 16 36 36 H 1.09002 * 109.52106 * 64.75112 * 18 17 16 37 37 H 0.97006 * 118.69969 * 179.66038 * 21 19 18 38 38 H 1.09003 * 109.51743 * 211.01694 * 24 22 21 39 39 H 1.09003 * 109.52156 * 90.83749 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 6 -1.3829 3.8934 2.5217 18 6 -1.4025 5.0079 1.4700 19 6 -2.7750 5.6271 1.4322 20 8 -3.1780 6.1124 0.3971 21 7 -3.5612 5.6491 2.5188 22 6 -3.1853 5.1219 3.6936 23 8 -3.9469 5.1655 4.6356 24 6 -1.8355 4.4764 3.8646 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 0.0673 2.6129 3.4685 33 1 0.7277 4.1529 2.8680 34 1 -2.0620 3.0952 2.2217 35 1 -0.6687 5.7698 1.7331 36 1 -1.1610 4.5905 0.4924 37 1 -4.4364 6.0623 2.4523 38 1 -1.9046 3.6781 4.6036 39 1 -1.1148 5.2225 4.1993 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182178969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:38 Heat of formation + Delta-G solvation = -155.178555 kcal Electronic energy + Delta-G solvation = -22504.514936 eV Core-core repulsion = 19024.285585 eV Total energy + Delta-G solvation = -3480.229351 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.48524 -40.60158 -39.89551 -37.43194 -36.49064 -35.23401 -34.20945 -32.78001 -29.97069 -29.75175 -28.46082 -25.03044 -24.20060 -23.41788 -21.63870 -20.86423 -20.29429 -18.92766 -18.76608 -18.18419 -17.30835 -17.20330 -16.92626 -16.46921 -16.04487 -15.68626 -15.45762 -15.39429 -15.05187 -14.56554 -14.50179 -13.83275 -13.58265 -13.42281 -13.14858 -13.06522 -12.79723 -12.75646 -12.65388 -12.20239 -12.06911 -11.99435 -11.78240 -11.51436 -11.42178 -11.36291 -11.25644 -10.96450 -10.53345 -10.33849 -9.46606 -8.11759 -6.28212 0.47131 1.46068 1.48291 1.58795 1.74601 1.83195 2.06477 2.40854 2.76649 3.08393 3.18503 3.52183 3.68018 3.77472 4.13532 4.27267 4.49813 4.55548 4.59716 4.64008 4.70786 4.81530 4.86177 4.94471 5.04656 5.10197 5.15135 5.24513 5.34331 5.50858 5.63251 5.74814 5.84185 5.88234 6.03030 6.25230 6.34543 6.80245 6.83109 7.17269 7.40655 7.79316 8.93285 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029685 B = 0.003641 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.014372 B = 7688.769371 C = 7749.391833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.543 4.543 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.965 3.035 10 H -0.258 1.258 11 H -0.283 1.283 12 H -0.288 1.288 13 N -0.708 5.708 14 C 0.489 3.511 15 O -0.588 6.588 16 C -0.122 4.122 17 C -0.066 4.066 18 C -0.142 4.142 19 C 0.535 3.465 20 O -0.549 6.549 21 N -0.673 5.673 22 C 0.533 3.467 23 O -0.541 6.541 24 C -0.126 4.126 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.022 0.978 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.262 0.738 31 H 0.405 0.595 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.101 0.899 37 H 0.410 0.590 38 H 0.138 0.862 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.190 7.361 15.448 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.581 4.581 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.791 3.209 10 H -0.181 1.181 11 H -0.209 1.209 12 H -0.214 1.214 13 N -0.357 5.357 14 C 0.277 3.723 15 O -0.470 6.470 16 C -0.162 4.162 17 C -0.085 4.085 18 C -0.181 4.181 19 C 0.327 3.673 20 O -0.425 6.425 21 N -0.337 5.337 22 C 0.324 3.676 23 O -0.416 6.416 24 C -0.165 4.165 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.240 0.760 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.093 0.907 35 H 0.156 0.844 36 H 0.119 0.881 37 H 0.249 0.751 38 H 0.156 0.844 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.087 7.409 14.590 17.459 hybrid contribution 0.473 -0.031 -0.813 0.941 sum -5.614 7.378 13.777 16.606 Atomic orbital electron populations 1.21669 0.96913 0.98843 1.00473 1.21779 0.93773 0.99530 1.01011 1.18270 0.93256 0.89023 0.82083 0.98498 1.21669 0.91820 1.38264 1.06350 0.90801 1.25746 1.02917 0.94675 0.95284 1.70061 1.36841 1.38727 1.09930 0.85398 0.79726 0.77615 0.78188 1.18126 1.20870 1.21421 1.46258 1.16099 1.56146 1.17180 1.21446 0.81418 0.78542 0.90879 1.90673 1.52225 1.61066 1.43017 1.21737 0.96406 1.03134 0.94896 1.20959 0.97904 0.96843 0.92837 1.22207 0.91783 0.99788 1.04368 1.21431 0.88176 0.76235 0.81492 1.90768 1.74937 1.45383 1.31405 1.44927 1.21402 1.55263 1.12121 1.21550 0.90486 0.75301 0.80232 1.90783 1.54932 1.56490 1.39440 1.22113 0.91557 1.03881 0.98927 0.92877 0.94247 0.95886 0.94052 0.91713 0.92875 0.76008 0.84983 0.84953 0.90718 0.84364 0.88114 0.75093 0.84421 0.83100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.51 71.98 0.61 -4.52 16 2 C -0.12 -5.66 5.45 30.59 0.17 -5.49 16 3 C 0.28 13.10 2.24 44.24 0.10 13.20 16 4 H 0.00 -0.17 7.58 -2.39 -0.02 -0.18 16 5 C -0.54 -26.94 8.73 25.60 0.22 -26.72 16 6 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 7 C 0.01 0.70 5.29 84.66 0.45 1.15 16 8 N -0.92 -51.33 11.29 21.45 0.24 -51.09 16 9 Si 0.97 40.64 29.54 68.60 2.03 42.66 16 10 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 13 N -0.71 -24.13 5.02 -446.11 -2.24 -26.37 16 14 C 0.49 14.60 6.15 87.66 0.54 15.14 16 15 O -0.59 -23.03 11.15 -3.04 -0.03 -23.06 16 16 C -0.12 -1.75 5.19 29.85 0.15 -1.59 16 17 C -0.07 -1.00 1.95 -10.63 -0.02 -1.02 16 18 C -0.14 -2.82 5.06 29.91 0.15 -2.67 16 19 C 0.54 12.43 7.74 87.73 0.68 13.11 16 20 O -0.55 -17.75 17.87 -2.85 -0.05 -17.80 16 21 N -0.67 -12.61 5.09 -428.60 -2.18 -14.79 16 22 C 0.53 8.99 7.74 87.72 0.68 9.67 16 23 O -0.54 -12.70 17.88 -2.86 -0.05 -12.75 16 24 C -0.13 -1.13 5.37 29.89 0.16 -0.97 16 25 H 0.05 2.05 5.64 -2.39 -0.01 2.04 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.02 1.06 7.85 -2.38 -0.02 1.04 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 3.47 5.95 -2.39 -0.01 3.45 16 30 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 31 H 0.40 11.05 8.54 -92.71 -0.79 10.26 16 32 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.13 1.04 8.14 -2.38 -0.02 1.03 16 34 H 0.07 1.48 7.96 -2.38 -0.02 1.46 16 35 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.10 2.92 6.11 -2.39 -0.01 2.90 16 37 H 0.41 7.36 8.79 -92.70 -0.81 6.54 16 38 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.15 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -74.65 320.04 1.09 -73.56 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.51 Total: 20.35 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 3.89 Total: 9.28 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -4.18 Total: -92.25 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -0.14 Total: -53.61 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.66 kcal Total: -74.65 1.09 -73.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182178969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.618 kcal (2) G-P(sol) polarization free energy of solvation -74.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds