Wall clock time and date at job start Fri Apr 10 2020 17:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42905 * 109.46974 * 299.55164 * 3 2 1 5 5 C 1.42899 * 113.99778 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47379 * 30.00380 * 5 4 3 7 7 C 1.53003 * 109.47347 * 270.00259 * 5 4 3 8 8 C 1.50704 * 109.46915 * 150.00141 * 5 4 3 9 9 O 1.21275 * 119.99865 * 5.00319 * 8 5 4 10 10 N 1.34779 * 119.99783 * 184.99883 * 8 5 4 11 11 C 1.46504 * 119.99887 * 179.97438 * 10 8 5 12 12 H 1.09004 * 110.87861 * 31.12114 * 11 10 8 13 13 C 1.54910 * 111.00501 * 267.20040 * 11 10 8 14 14 N 1.47419 * 104.82871 * 204.91740 * 13 11 10 15 15 C 1.36936 * 125.64627 * 204.08162 * 14 13 11 16 16 H 1.08003 * 119.99857 * 0.03048 * 15 14 13 17 17 C 1.38817 * 120.00310 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99616 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00061 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46741 * 90.00693 * 19 17 15 21 21 H 1.48503 * 109.46982 * 210.00024 * 19 17 15 22 22 H 1.48494 * 109.47415 * 330.00349 * 19 17 15 23 23 C 1.47024 * 108.70779 * 24.12361 * 14 13 11 24 24 C 1.54319 * 107.26952 * 358.94548 * 23 14 13 25 25 H 1.08995 * 110.72449 * 96.16452 * 24 23 14 26 26 O 1.42901 * 110.71894 * 219.44154 * 24 23 14 27 27 H 4.38445 * 5.44316 * 179.97438 * 4 1 2 28 28 H 1.09004 * 109.46939 * 179.55450 * 3 2 1 29 29 H 1.09000 * 109.47409 * 59.55329 * 3 2 1 30 30 H 1.09001 * 109.47258 * 180.02562 * 7 5 4 31 31 H 1.09001 * 109.46539 * 300.00205 * 7 5 4 32 32 H 1.08993 * 109.46966 * 60.00224 * 7 5 4 33 33 H 0.97005 * 119.99956 * 0.02562 * 10 8 5 34 34 H 1.09003 * 110.36151 * 323.75272 * 13 11 10 35 35 H 1.08993 * 110.36574 * 86.07254 * 13 11 10 36 36 H 0.96997 * 119.99526 * 179.97438 * 18 17 15 37 37 H 1.08994 * 109.88238 * 239.52393 * 23 14 13 38 38 H 1.08999 * 109.87994 * 118.36068 * 23 14 13 39 39 H 0.96692 * 113.99961 * 293.51929 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1226 -0.6636 1.1721 5 6 4.5472 -0.7181 1.2705 6 1 4.9791 0.1528 0.7773 7 6 5.0568 -1.9923 0.5939 8 6 4.9505 -0.7246 2.7226 9 8 4.1019 -0.7780 3.5873 10 7 6.2542 -0.6711 3.0601 11 6 6.6463 -0.6769 4.4717 12 1 5.9349 -1.2461 5.0701 13 6 6.7974 0.7671 5.0118 14 7 7.7348 0.6504 6.1436 15 6 7.8247 1.5191 7.1983 16 1 7.1720 2.3782 7.2474 17 6 8.7547 1.2957 8.2043 18 7 9.5504 0.2490 8.1443 19 14 8.8777 2.4812 9.6427 20 1 7.9664 2.0384 10.7284 21 1 10.2742 2.5041 10.1472 22 1 8.4904 3.8434 9.1959 23 6 8.5579 -0.5527 5.9520 24 6 8.0863 -1.2274 4.6467 25 1 8.7172 -0.9300 3.8091 26 8 8.0702 -2.6491 4.7896 27 1 -1.0498 0.0001 0.0002 28 1 3.0089 1.0285 -0.0080 29 1 3.0096 -0.5199 -0.8859 30 1 6.1434 -2.0341 0.6694 31 1 4.6249 -2.8631 1.0871 32 1 4.7652 -1.9876 -0.4562 33 1 6.9329 -0.6281 2.3683 34 1 7.2113 1.4186 4.2421 35 1 5.8348 1.1468 5.3540 36 1 10.2005 0.0931 8.8471 37 1 8.4203 -1.2336 6.7919 38 1 9.6081 -0.2736 5.8666 39 1 8.9460 -3.0430 4.9020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192844098.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:41 Heat of formation + Delta-G solvation = -68.609684 kcal Electronic energy + Delta-G solvation = -22093.065809 eV Core-core repulsion = 18616.590366 eV Total energy + Delta-G solvation = -3476.475443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.26435 -39.75150 -38.64323 -36.67774 -35.63289 -34.45225 -33.71184 -32.21054 -30.10200 -28.73739 -28.05804 -26.51735 -24.95413 -22.41323 -21.99052 -21.50248 -19.68582 -19.12245 -18.38841 -18.13212 -17.82847 -17.26540 -16.69511 -16.38100 -16.06727 -15.76597 -15.65034 -15.09197 -14.54839 -14.47466 -14.32566 -13.92927 -13.75734 -13.54807 -13.18567 -13.16775 -13.10528 -12.75927 -12.74799 -12.42324 -12.09389 -11.89482 -11.70642 -11.55700 -11.54737 -11.08185 -10.83963 -10.77806 -10.45483 -10.18697 -8.97823 -7.89823 -5.27028 1.33888 1.45136 1.47671 1.54482 1.56127 1.82279 2.00944 2.46844 3.03860 3.12990 3.30918 3.53320 3.55132 3.68113 3.87590 3.93662 4.05825 4.10049 4.19837 4.27743 4.44452 4.49309 4.55595 4.73982 4.80841 4.83295 4.98634 5.02199 5.25301 5.35865 5.42017 5.44781 5.66015 6.01297 6.12976 6.54681 6.60374 6.88637 7.04037 7.23043 7.68354 8.30502 9.19853 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025359 B = 0.003534 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.898936 B = 7920.527715 C = 8767.686599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.391 6.391 5 C 0.079 3.921 6 H 0.133 0.867 7 C -0.165 4.165 8 C 0.507 3.493 9 O -0.579 6.579 10 N -0.693 5.693 11 C 0.152 3.848 12 H 0.066 0.934 13 C 0.131 3.869 14 N -0.623 5.623 15 C -0.249 4.249 16 H 0.081 0.919 17 C -0.061 4.061 18 N -0.948 5.948 19 Si 0.981 3.019 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.268 1.268 23 C 0.160 3.840 24 C 0.093 3.907 25 H 0.102 0.898 26 O -0.570 6.570 27 H 0.251 0.749 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.420 0.580 34 H 0.049 0.951 35 H 0.029 0.971 36 H 0.250 0.750 37 H 0.018 0.982 38 H 0.029 0.971 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 -2.516 -22.112 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.238 4.238 3 C 0.088 3.912 4 O -0.310 6.310 5 C 0.018 3.982 6 H 0.150 0.850 7 C -0.223 4.223 8 C 0.294 3.706 9 O -0.457 6.457 10 N -0.347 5.347 11 C 0.045 3.955 12 H 0.084 0.916 13 C 0.004 3.996 14 N -0.351 5.351 15 C -0.378 4.378 16 H 0.098 0.902 17 C -0.255 4.255 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.193 1.193 23 C 0.034 3.966 24 C 0.033 3.967 25 H 0.119 0.881 26 O -0.377 6.377 27 H 0.267 0.733 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.259 0.741 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.036 0.964 38 H 0.047 0.953 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -7.311 -2.524 -21.268 22.631 hybrid contribution 0.886 0.493 1.128 1.517 sum -6.425 -2.031 -20.140 21.237 Atomic orbital electron populations 1.25867 0.96973 0.98810 0.96948 1.23225 0.95217 1.02269 1.03074 1.19509 0.84417 0.98565 0.88671 1.88088 1.20386 1.78528 1.44004 1.22057 0.82350 1.03000 0.90775 0.84984 1.22262 1.03021 0.94938 1.02033 1.21276 0.82246 0.75015 0.92098 1.90727 1.51707 1.50168 1.53084 1.45540 1.07346 1.74523 1.07279 1.21730 0.95350 0.95882 0.82550 0.91571 1.21944 0.92862 0.94638 0.90166 1.44523 1.40236 1.27413 1.22900 1.19446 1.15949 1.03677 0.98687 0.90159 1.25655 0.98350 1.00065 1.01388 1.70126 1.24681 1.29886 1.34935 0.85052 0.76628 0.78584 0.78887 1.21629 1.21482 1.19273 1.21649 0.93868 0.87613 0.93445 1.23159 0.94851 0.81160 0.97556 0.88089 1.86442 1.36209 1.19081 1.96004 0.73264 0.88898 0.87544 0.88424 0.93343 0.88353 0.74112 0.93318 0.95246 0.94109 0.96371 0.95289 0.75322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 19.25 74.32 1.43 -1.62 16 2 C -0.24 -5.08 13.73 31.13 0.43 -4.65 16 3 C 0.16 2.80 6.22 70.18 0.44 3.23 16 4 O -0.39 -10.01 9.48 -129.99 -1.23 -11.24 16 5 C 0.08 1.53 3.13 29.85 0.09 1.63 16 6 H 0.13 1.43 7.79 -2.38 -0.02 1.41 16 7 C -0.17 -2.24 9.48 71.98 0.68 -1.55 16 8 C 0.51 15.40 7.18 87.66 0.63 16.03 16 9 O -0.58 -25.06 16.15 15.98 0.26 -24.80 16 10 N -0.69 -18.62 5.16 -435.95 -2.25 -20.87 16 11 C 0.15 5.66 3.15 46.38 0.15 5.81 16 12 H 0.07 3.04 7.54 -2.39 -0.02 3.02 16 13 C 0.13 5.59 6.93 86.86 0.60 6.19 16 14 N -0.62 -32.55 3.39 -692.01 -2.35 -34.89 16 15 C -0.25 -14.25 10.28 84.03 0.86 -13.38 16 16 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 17 C -0.06 -3.50 5.49 84.86 0.47 -3.04 16 18 N -0.95 -56.32 10.31 21.65 0.22 -56.09 16 19 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 C 0.16 7.68 5.15 86.73 0.45 8.13 16 24 C 0.09 3.24 3.98 31.78 0.13 3.36 16 25 H 0.10 2.72 8.00 -2.39 -0.02 2.70 16 26 O -0.57 -18.60 13.39 -148.98 -1.99 -20.59 16 27 H 0.25 2.37 7.80 -4.42 -0.03 2.34 16 28 H 0.09 1.21 8.08 -2.38 -0.02 1.19 16 29 H 0.11 1.08 7.87 -2.39 -0.02 1.06 16 30 H 0.10 0.89 7.92 -2.39 -0.02 0.87 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.79 7.87 -2.39 -0.02 0.77 16 33 H 0.42 7.27 8.35 -92.70 -0.77 6.50 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 37 H 0.02 1.01 7.30 -2.39 -0.02 0.99 16 38 H 0.03 1.49 7.50 -2.39 -0.02 1.47 16 39 H 0.40 9.40 9.12 -74.06 -0.68 8.72 16 Total: -1.00 -84.53 338.43 0.65 -83.87 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.38 Total: 16.38 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 6.35 Total: 20.14 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -4.37 Total: -111.85 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -2.97 Total: -56.64 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -84.53 0.65 -83.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192844098.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.265 kcal (2) G-P(sol) polarization free energy of solvation -84.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds