Wall clock time and date at job start Fri Apr 10 2020 17:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00085 * 2 1 4 4 H 1.48505 * 109.46841 * 264.84613 * 3 2 1 5 5 H 1.48500 * 109.46993 * 144.84897 * 3 2 1 6 6 H 1.48503 * 109.47368 * 24.84307 * 3 2 1 7 7 C 1.38813 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99767 * 197.95931 * 7 2 1 9 9 N 1.36941 * 119.99819 * 17.96502 * 7 2 1 10 10 C 1.46918 * 120.63232 * 27.32889 * 9 7 2 11 11 C 1.53630 * 108.54220 * 126.36858 * 10 9 7 12 12 C 1.53045 * 109.23759 * 54.85780 * 11 10 9 13 13 C 1.53036 * 109.53873 * 298.50895 * 12 11 10 14 14 H 1.08997 * 109.50120 * 301.41958 * 13 12 11 15 15 C 1.52998 * 109.52490 * 181.33259 * 13 12 11 16 16 N 1.46502 * 109.47084 * 175.14948 * 15 13 12 17 17 C 1.34776 * 119.99643 * 180.02562 * 16 15 13 18 18 O 1.21277 * 120.00623 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99863 * 179.97438 * 17 16 15 20 20 H 1.09007 * 110.74909 * 62.01933 * 19 17 16 21 21 C 1.55300 * 110.85107 * 185.71102 * 19 17 16 22 22 C 1.54942 * 100.94370 * 152.32232 * 21 19 17 23 23 O 1.43649 * 105.13668 * 323.56388 * 22 21 19 24 24 C 1.43235 * 109.97204 * 24.41869 * 23 22 21 25 25 C 1.46931 * 120.62632 * 207.61598 * 9 7 2 26 26 H 0.97013 * 119.99687 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.59057 * 246.20325 * 10 9 7 28 28 H 1.09000 * 109.58781 * 6.63407 * 10 9 7 29 29 H 1.08997 * 109.63847 * 294.87018 * 11 10 9 30 30 H 1.09000 * 109.45645 * 174.73997 * 11 10 9 31 31 H 1.09002 * 109.45638 * 178.48938 * 12 11 10 32 32 H 1.09000 * 109.46232 * 58.53285 * 12 11 10 33 33 H 1.08998 * 109.47177 * 295.14620 * 15 13 12 34 34 H 1.09001 * 109.47371 * 55.15043 * 15 13 12 35 35 H 0.97001 * 120.00248 * 359.97438 * 16 15 13 36 36 H 1.08998 * 111.12915 * 270.24916 * 21 19 17 37 37 H 1.09002 * 111.12395 * 34.41068 * 21 19 17 38 38 H 1.08995 * 110.31481 * 204.64255 * 22 21 19 39 39 H 1.09002 * 110.30646 * 82.47304 * 22 21 19 40 40 H 1.08999 * 109.83016 * 238.77643 * 24 23 22 41 41 H 1.09003 * 109.90045 * 117.84982 * 24 23 22 42 42 H 1.08997 * 109.58767 * 353.36851 * 25 9 7 43 43 H 1.08992 * 109.58544 * 113.79823 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6066 1.9835 -1.3945 5 1 3.4891 1.4740 0.8061 6 1 1.3975 2.6817 0.5882 7 6 2.0102 -1.2022 0.0005 8 1 3.0507 -1.2249 0.2889 9 7 1.3755 -2.3593 -0.3647 10 6 0.2347 -2.3274 -1.2900 11 6 0.5205 -3.2917 -2.4514 12 6 0.8343 -4.6799 -1.8886 13 6 2.0831 -4.6045 -1.0072 14 1 2.9214 -4.2310 -1.5951 15 6 2.4157 -5.9986 -0.4716 16 7 3.6745 -5.9468 0.2761 17 6 4.1684 -7.0657 0.8424 18 8 3.5706 -8.1153 0.7334 19 6 5.4636 -7.0127 1.6110 20 1 5.3749 -6.3499 2.4719 21 6 5.9062 -8.4360 2.0472 22 6 7.4437 -8.2571 2.1178 23 8 7.7683 -7.3705 1.0352 24 6 6.6274 -6.5733 0.6968 25 6 1.8185 -3.6558 0.1662 26 1 -0.4850 0.8402 -0.0004 27 1 -0.6692 -2.6391 -0.7666 28 1 0.1056 -1.3163 -1.6761 29 1 1.3736 -2.9306 -3.0257 30 1 -0.3549 -3.3506 -3.0981 31 1 1.0113 -5.3734 -2.7107 32 1 -0.0094 -5.0299 -1.2939 33 1 1.6154 -6.3352 0.1874 34 1 2.5166 -6.6936 -1.3052 35 1 4.1529 -5.1075 0.3630 36 1 5.4953 -8.6933 3.0234 37 1 5.6313 -9.1794 1.2989 38 1 7.9428 -9.2167 1.9836 39 1 7.7292 -7.8112 3.0706 40 1 6.3593 -6.7358 -0.3471 41 1 6.8494 -5.5190 0.8617 42 1 2.7347 -3.5214 0.7411 43 1 1.0412 -4.0735 0.8058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359717335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:37 Heat of formation + Delta-G solvation = -97.428707 kcal Electronic energy + Delta-G solvation = -22716.157366 eV Core-core repulsion = 19374.265331 eV Total energy + Delta-G solvation = -3341.892035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40574 -39.81735 -39.10010 -36.28896 -34.70393 -33.40322 -32.29708 -31.89992 -30.26069 -27.27874 -26.85804 -24.32443 -23.78716 -23.19111 -22.35635 -21.28281 -20.51501 -18.74527 -18.41588 -17.68369 -17.14072 -16.83955 -16.36144 -16.25478 -15.75447 -15.69327 -15.25315 -14.99991 -14.68125 -14.48594 -14.29652 -14.03405 -13.77474 -13.61903 -13.12870 -13.01880 -12.87137 -12.54383 -12.45127 -12.30009 -12.26348 -11.95707 -11.94764 -11.82796 -11.58119 -11.36402 -11.11132 -10.93291 -10.52405 -10.49588 -10.10775 -8.68586 -7.86354 -5.31529 1.48146 1.50159 1.52800 1.57686 2.13225 2.51918 2.87848 3.26622 3.28364 3.59448 3.74123 3.89787 3.99004 4.01258 4.05918 4.13395 4.20964 4.30242 4.40636 4.57042 4.60794 4.69904 4.76314 4.77564 4.84784 4.87595 4.91072 4.92260 5.00861 5.10578 5.13430 5.22915 5.33141 5.38057 5.46847 5.57518 5.67374 5.78303 5.94434 6.39019 6.48957 7.15303 7.15609 7.86987 8.38825 9.19786 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019397 B = 0.003913 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.201310 B = 7153.510984 C = 8191.483371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.285 1.285 5 H -0.266 1.266 6 H -0.299 1.299 7 C -0.262 4.262 8 H 0.073 0.927 9 N -0.610 5.610 10 C 0.172 3.828 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.100 4.100 14 H 0.078 0.922 15 C 0.137 3.863 16 N -0.716 5.716 17 C 0.523 3.477 18 O -0.579 6.579 19 C -0.144 4.144 20 H 0.136 0.864 21 C -0.134 4.134 22 C 0.049 3.951 23 O -0.403 6.403 24 C 0.063 3.937 25 C 0.152 3.848 26 H 0.249 0.751 27 H -0.008 1.008 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.412 0.588 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.572 -14.009 1.160 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.212 1.212 5 H -0.191 1.191 6 H -0.226 1.226 7 C -0.392 4.392 8 H 0.090 0.910 9 N -0.333 5.333 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.121 4.121 14 H 0.096 0.904 15 C 0.012 3.988 16 N -0.367 5.367 17 C 0.310 3.690 18 O -0.459 6.459 19 C -0.165 4.165 20 H 0.154 0.846 21 C -0.172 4.172 22 C -0.026 4.026 23 O -0.323 6.323 24 C -0.013 4.013 25 C 0.027 3.973 26 H 0.058 0.942 27 H 0.010 0.990 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.249 0.751 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 11.241 -14.587 0.997 18.443 hybrid contribution -0.307 1.555 0.240 1.603 sum 10.935 -13.032 1.237 17.057 Atomic orbital electron populations 1.70209 1.06806 1.25784 1.55477 1.25783 0.95937 1.01546 1.01424 0.85314 0.78060 0.79526 0.77735 1.21213 1.19073 1.22575 1.19562 0.93348 0.86031 1.40237 0.90954 1.44337 1.36240 1.02104 1.50581 1.20727 0.87701 0.97846 0.89087 1.22069 1.00903 0.95960 0.97969 1.21341 0.96662 0.96701 0.98871 1.21717 0.99084 0.93455 0.97794 0.90392 1.21276 0.85331 0.96695 0.95464 1.46071 1.24933 1.11786 1.53940 1.20625 0.86659 0.83101 0.78641 1.90681 1.62104 1.31338 1.61819 1.22982 0.92025 1.01238 1.00240 0.84645 1.23142 0.95631 0.94710 1.03734 1.23595 0.93905 0.94567 0.90561 1.88391 1.35332 1.54328 1.54234 1.23119 0.83612 0.96557 0.98056 1.21032 0.97150 0.85652 0.93503 0.94236 0.98958 0.93025 0.92785 0.91384 0.90233 0.92722 0.92499 0.91052 0.75107 0.88077 0.90943 0.88294 0.90046 0.91571 0.88563 0.92260 0.97706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.91 11.20 21.65 0.24 -54.67 16 2 C -0.05 -2.82 4.90 84.86 0.42 -2.40 16 3 Si 0.97 43.73 29.59 68.60 2.03 45.76 16 4 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 6 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.26 -13.81 9.59 84.03 0.81 -13.01 16 8 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 9 N -0.61 -29.33 2.99 -698.26 -2.09 -31.42 16 10 C 0.17 8.14 5.34 86.51 0.46 8.60 16 11 C -0.13 -4.63 6.10 30.82 0.19 -4.44 16 12 C -0.10 -2.91 5.17 30.62 0.16 -2.75 16 13 C -0.10 -2.96 2.37 -10.72 -0.03 -2.98 16 14 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 15 C 0.14 3.54 5.07 86.38 0.44 3.97 16 16 N -0.72 -16.42 5.28 -463.06 -2.44 -18.86 16 17 C 0.52 12.69 7.02 87.66 0.62 13.31 16 18 O -0.58 -18.52 15.76 -3.02 -0.05 -18.57 16 19 C -0.14 -2.51 3.39 -10.28 -0.03 -2.55 16 20 H 0.14 1.81 8.14 -2.38 -0.02 1.79 16 21 C -0.13 -2.25 6.23 32.05 0.20 -2.05 16 22 C 0.05 0.72 7.78 72.65 0.56 1.29 16 23 O -0.40 -8.15 11.36 -148.98 -1.69 -9.84 16 24 C 0.06 1.10 7.34 72.45 0.53 1.63 16 25 C 0.15 5.79 5.60 86.36 0.48 6.27 16 26 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.05 2.79 6.03 -2.39 -0.01 2.78 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.41 8.12 7.69 -92.71 -0.71 7.40 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.51 7.47 -2.39 -0.02 1.50 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 1.24 7.81 -2.39 -0.02 1.22 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 2.10 7.13 -2.39 -0.02 2.09 16 43 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 Total: -1.00 -67.93 339.71 1.08 -66.85 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.27 Total: 15.85 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 4.80 Total: 4.90 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -4.29 Total: -104.95 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -1.74 Total: -28.41 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.93 1.08 -66.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359717335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.579 kcal (2) G-P(sol) polarization free energy of solvation -67.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds