Wall clock time and date at job start Fri Apr 10 2020 17:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46746 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46937 * 300.00383 * 3 2 1 6 6 H 1.48498 * 109.46993 * 60.00459 * 3 2 1 7 7 C 1.38814 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00189 * 163.06272 * 7 2 1 9 9 N 1.36941 * 119.99914 * 343.05891 * 7 2 1 10 10 C 1.46930 * 120.63029 * 331.84679 * 9 7 2 11 11 C 1.53185 * 108.77559 * 233.61028 * 10 9 7 12 12 C 1.53048 * 109.31167 * 305.36413 * 11 10 9 13 13 C 1.53040 * 109.53703 * 61.36928 * 12 11 10 14 14 H 1.08998 * 109.50226 * 58.61493 * 13 12 11 15 15 C 1.53003 * 109.49742 * 178.68250 * 13 12 11 16 16 N 1.46499 * 109.46902 * 184.93080 * 15 13 12 17 17 C 1.34780 * 119.99744 * 180.02562 * 16 15 13 18 18 O 1.21287 * 120.00108 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.99839 * 180.02562 * 17 16 15 20 20 H 1.09000 * 110.46080 * 302.60197 * 19 17 16 21 21 C 1.54510 * 110.51010 * 179.97438 * 19 17 16 22 22 C 1.54481 * 104.06318 * 241.35260 * 21 19 17 23 23 O 1.44420 * 104.80412 * 23.98386 * 22 21 19 24 24 C 1.44430 * 105.27051 * 319.48182 * 23 22 21 25 25 C 1.46932 * 120.60547 * 151.86823 * 9 7 2 26 26 H 0.97004 * 119.99948 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.58343 * 113.81892 * 10 9 7 28 28 H 1.08998 * 109.70216 * 353.47072 * 10 9 7 29 29 H 1.09000 * 109.49584 * 185.41742 * 11 10 9 30 30 H 1.08998 * 109.53018 * 65.33349 * 11 10 9 31 31 H 1.08999 * 109.46110 * 301.34605 * 12 11 10 32 32 H 1.08999 * 109.44387 * 181.37825 * 12 11 10 33 33 H 1.08993 * 109.46936 * 304.93479 * 15 13 12 34 34 H 1.08997 * 109.46712 * 64.93131 * 15 13 12 35 35 H 0.96998 * 120.00148 * 0.02562 * 16 15 13 36 36 H 1.09001 * 110.51028 * 359.97438 * 21 19 17 37 37 H 1.08997 * 110.51162 * 122.71145 * 21 19 17 38 38 H 1.09012 * 110.36776 * 142.81248 * 22 21 19 39 39 H 1.08999 * 110.37424 * 265.14500 * 22 21 19 40 40 H 1.08997 * 110.37497 * 281.68421 * 24 23 22 41 41 H 1.09005 * 110.36468 * 159.34626 * 24 23 22 42 42 H 1.09003 * 109.61204 * 6.62286 * 25 9 7 43 43 H 1.08996 * 109.56167 * 246.19270 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2730 9 7 1.3700 -2.3625 0.3445 10 6 0.2262 -2.3408 1.2665 11 6 0.4980 -3.3202 2.4125 12 6 0.8127 -4.7016 1.8338 13 6 2.0680 -4.6176 0.9624 14 1 2.9031 -4.2544 1.5613 15 6 2.4006 -6.0055 0.4109 16 7 3.6657 -5.9480 -0.3255 17 6 4.1601 -7.0606 -0.9035 18 8 3.5579 -8.1096 -0.8136 19 6 5.4618 -7.0016 -1.6606 20 1 5.4035 -6.2648 -2.4617 21 6 5.8211 -8.3927 -2.2289 22 6 7.1637 -8.7408 -1.5487 23 8 7.1759 -7.9588 -0.3346 24 6 6.6299 -6.6738 -0.7043 25 6 1.8147 -3.6527 -0.2002 26 1 -0.4850 0.8401 0.0004 27 1 -0.6770 -2.6413 0.7353 28 1 0.0967 -1.3356 1.6677 29 1 -0.3825 -3.3855 3.0518 30 1 1.3475 -2.9690 2.9982 31 1 -0.0275 -5.0418 1.2286 32 1 0.9824 -5.4061 2.6481 33 1 2.4921 -6.7119 1.2359 34 1 1.6046 -6.3305 -0.2591 35 1 4.1475 -5.1092 -0.3971 36 1 5.0574 -9.1232 -1.9619 37 1 5.9427 -8.3435 -3.3109 38 1 7.2062 -9.8047 -1.3152 39 1 7.9985 -8.4586 -2.1903 40 1 7.3828 -6.0746 -1.2163 41 1 6.2623 -6.1498 0.1781 42 1 2.7357 -3.5129 -0.7663 43 1 1.0413 -4.0600 -0.8513 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359717336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:40 Heat of formation + Delta-G solvation = -75.409276 kcal Electronic energy + Delta-G solvation = -22784.779597 eV Core-core repulsion = 19443.842396 eV Total energy + Delta-G solvation = -3340.937201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.48687 -38.65144 -37.67658 -34.87005 -33.09185 -32.41146 -30.58163 -30.45217 -29.28007 -25.65836 -25.28143 -23.64212 -22.37344 -21.97151 -20.92562 -20.03886 -19.05878 -17.53139 -16.80004 -16.59394 -16.20746 -15.60909 -15.11068 -14.99555 -14.83826 -14.15346 -13.94136 -13.63249 -13.45381 -12.97609 -12.81526 -12.43776 -12.30573 -12.19317 -12.09705 -11.70921 -11.54376 -11.31096 -11.16366 -11.05295 -10.76079 -10.51711 -10.27963 -10.23209 -10.18841 -9.96176 -9.76022 -9.54564 -9.44843 -8.95889 -8.50797 -6.71190 -5.83024 -3.26356 2.60896 3.19285 3.33333 3.41324 3.42926 3.72555 4.19042 4.44178 4.55602 4.66743 4.86994 4.94232 5.06578 5.18978 5.26781 5.31501 5.39900 5.41296 5.44658 5.47396 5.59140 5.59917 5.80672 5.92261 5.95441 5.97741 6.20658 6.30233 6.34884 6.47117 6.50664 6.56015 6.67500 6.74261 6.83191 6.92855 7.36691 7.54617 7.64216 7.74653 8.23570 8.40367 9.16655 9.80142 10.37067 11.25205 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.003867 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.016103 B = 7239.082021 C = 8121.117886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.127 3.873 16 N -0.722 5.722 17 C 0.521 3.479 18 O -0.541 6.541 19 C -0.149 4.149 20 H 0.113 0.887 21 C -0.147 4.147 22 C 0.045 3.955 23 O -0.372 6.372 24 C 0.055 3.945 25 C 0.154 3.846 26 H 0.253 0.747 27 H 0.017 0.983 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.403 0.597 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.449 -12.915 -1.685 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.373 5.373 17 C 0.307 3.693 18 O -0.419 6.419 19 C -0.170 4.170 20 H 0.131 0.869 21 C -0.185 4.185 22 C -0.031 4.031 23 O -0.290 6.290 24 C -0.022 4.022 25 C 0.028 3.972 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.238 0.762 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.068 0.932 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.963 -13.568 -1.414 16.892 hybrid contribution 0.466 1.465 -0.317 1.570 sum 10.429 -12.103 -1.731 16.070 Atomic orbital electron populations 1.70047 1.05295 1.25426 1.53733 1.25050 0.95271 0.98424 1.00809 0.86246 0.79330 0.83994 0.77314 1.20263 1.21723 1.21530 1.19197 0.92500 0.84807 1.41927 0.91720 1.44046 1.35923 1.01328 1.50110 1.20790 0.88529 0.98294 0.88035 1.22171 1.00125 0.95961 0.99827 1.21342 0.96719 0.97760 0.97971 1.21959 0.98887 0.93581 0.99410 0.90862 1.21475 0.84730 0.98033 0.95437 1.46055 1.24972 1.11639 1.54658 1.20222 0.86346 0.83713 0.79038 1.90658 1.60813 1.29859 1.60527 1.22738 0.94246 1.00622 0.99425 0.86912 1.22999 0.98812 0.96085 1.00568 1.23457 0.96342 0.97071 0.86275 1.89162 1.84193 1.24557 1.31106 1.23416 0.93192 0.87052 0.98532 1.20895 0.97419 0.86849 0.92087 0.93649 0.96464 0.89573 0.93168 0.92744 0.92480 0.93418 0.91954 0.91583 0.76224 0.88139 0.90022 0.88908 0.92179 0.90921 0.88568 0.93199 0.96381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.72 11.19 55.49 0.62 -25.10 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 8 H 0.07 1.66 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -14.28 2.99 -172.31 -0.52 -14.79 16 10 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 11 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 12 C -0.10 -1.62 5.17 -26.69 -0.14 -1.76 16 13 C -0.12 -1.89 2.37 -90.50 -0.21 -2.11 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.13 1.83 5.07 -4.04 -0.02 1.81 16 16 N -0.72 -9.32 5.14 -60.30 -0.31 -9.63 16 17 C 0.52 7.06 7.07 -10.99 -0.08 6.98 16 18 O -0.54 -9.28 15.28 5.55 0.08 -9.20 16 19 C -0.15 -1.49 3.51 -90.20 -0.32 -1.80 16 20 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.15 -1.39 6.67 -25.16 -0.17 -1.56 16 22 C 0.05 0.41 7.63 37.93 0.29 0.69 16 23 O -0.37 -4.41 11.65 -35.23 -0.41 -4.82 16 24 C 0.06 0.53 7.17 37.93 0.27 0.80 16 25 C 0.15 3.03 5.60 -3.71 -0.02 3.01 16 26 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 4.55 7.70 -40.82 -0.31 4.23 16 36 H 0.10 1.18 6.50 -51.93 -0.34 0.85 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.92 7.72 -51.93 -0.40 0.52 16 42 H 0.05 0.93 7.14 -51.93 -0.37 0.55 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -31.68 338.62 -8.47 -40.15 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.21 Total: 1.86 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -0.81 Total: 0.32 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.20 Total: -49.52 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.33 Total: -14.02 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.68 -8.47 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359717336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.262 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds