Wall clock time and date at job start Fri Apr 10 2020 17:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46746 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46937 * 300.00383 * 3 2 1 6 6 H 1.48498 * 109.46993 * 60.00459 * 3 2 1 7 7 C 1.38814 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00189 * 163.06272 * 7 2 1 9 9 N 1.36941 * 119.99914 * 343.05891 * 7 2 1 10 10 C 1.46930 * 120.63029 * 331.84679 * 9 7 2 11 11 C 1.53185 * 108.77559 * 233.61028 * 10 9 7 12 12 C 1.53048 * 109.31167 * 305.36413 * 11 10 9 13 13 C 1.53040 * 109.53703 * 61.36928 * 12 11 10 14 14 H 1.08998 * 109.50226 * 58.61493 * 13 12 11 15 15 C 1.53003 * 109.49742 * 178.68250 * 13 12 11 16 16 N 1.46499 * 109.46902 * 184.93080 * 15 13 12 17 17 C 1.34780 * 119.99744 * 180.02562 * 16 15 13 18 18 O 1.21287 * 120.00108 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.99839 * 180.02562 * 17 16 15 20 20 H 1.09000 * 110.46080 * 302.60197 * 19 17 16 21 21 C 1.54510 * 110.51010 * 179.97438 * 19 17 16 22 22 C 1.54481 * 104.06318 * 241.35260 * 21 19 17 23 23 O 1.44420 * 104.80412 * 23.98386 * 22 21 19 24 24 C 1.44430 * 105.27051 * 319.48182 * 23 22 21 25 25 C 1.46932 * 120.60547 * 151.86823 * 9 7 2 26 26 H 0.97004 * 119.99948 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.58343 * 113.81892 * 10 9 7 28 28 H 1.08998 * 109.70216 * 353.47072 * 10 9 7 29 29 H 1.09000 * 109.49584 * 185.41742 * 11 10 9 30 30 H 1.08998 * 109.53018 * 65.33349 * 11 10 9 31 31 H 1.08999 * 109.46110 * 301.34605 * 12 11 10 32 32 H 1.08999 * 109.44387 * 181.37825 * 12 11 10 33 33 H 1.08993 * 109.46936 * 304.93479 * 15 13 12 34 34 H 1.08997 * 109.46712 * 64.93131 * 15 13 12 35 35 H 0.96998 * 120.00148 * 0.02562 * 16 15 13 36 36 H 1.09001 * 110.51028 * 359.97438 * 21 19 17 37 37 H 1.08997 * 110.51162 * 122.71145 * 21 19 17 38 38 H 1.09012 * 110.36776 * 142.81248 * 22 21 19 39 39 H 1.08999 * 110.37424 * 265.14500 * 22 21 19 40 40 H 1.08997 * 110.37497 * 281.68421 * 24 23 22 41 41 H 1.09005 * 110.36468 * 159.34626 * 24 23 22 42 42 H 1.09003 * 109.61204 * 6.62286 * 25 9 7 43 43 H 1.08996 * 109.56167 * 246.19270 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2730 9 7 1.3700 -2.3625 0.3445 10 6 0.2262 -2.3408 1.2665 11 6 0.4980 -3.3202 2.4125 12 6 0.8127 -4.7016 1.8338 13 6 2.0680 -4.6176 0.9624 14 1 2.9031 -4.2544 1.5613 15 6 2.4006 -6.0055 0.4109 16 7 3.6657 -5.9480 -0.3255 17 6 4.1601 -7.0606 -0.9035 18 8 3.5579 -8.1096 -0.8136 19 6 5.4618 -7.0016 -1.6606 20 1 5.4035 -6.2648 -2.4617 21 6 5.8211 -8.3927 -2.2289 22 6 7.1637 -8.7408 -1.5487 23 8 7.1759 -7.9588 -0.3346 24 6 6.6299 -6.6738 -0.7043 25 6 1.8147 -3.6527 -0.2002 26 1 -0.4850 0.8401 0.0004 27 1 -0.6770 -2.6413 0.7353 28 1 0.0967 -1.3356 1.6677 29 1 -0.3825 -3.3855 3.0518 30 1 1.3475 -2.9690 2.9982 31 1 -0.0275 -5.0418 1.2286 32 1 0.9824 -5.4061 2.6481 33 1 2.4921 -6.7119 1.2359 34 1 1.6046 -6.3305 -0.2591 35 1 4.1475 -5.1092 -0.3971 36 1 5.0574 -9.1232 -1.9619 37 1 5.9427 -8.3435 -3.3109 38 1 7.2062 -9.8047 -1.3152 39 1 7.9985 -8.4586 -2.1903 40 1 7.3828 -6.0746 -1.2163 41 1 6.2623 -6.1498 0.1781 42 1 2.7357 -3.5129 -0.7663 43 1 1.0413 -4.0600 -0.8513 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359717336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:39 Heat of formation + Delta-G solvation = -96.905345 kcal Electronic energy + Delta-G solvation = -22785.711737 eV Core-core repulsion = 19443.842396 eV Total energy + Delta-G solvation = -3341.869341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.43461 -39.77217 -39.01704 -36.28307 -34.70149 -33.31343 -32.29855 -31.92160 -30.12073 -27.27653 -26.84882 -24.51358 -23.83138 -23.13369 -22.30089 -21.17784 -20.46592 -18.73148 -18.33724 -17.49536 -17.18672 -16.83358 -16.50554 -16.28307 -15.85244 -15.67348 -15.27519 -15.04091 -14.86129 -14.50784 -14.05139 -13.79837 -13.72692 -13.49694 -13.00877 -12.94941 -12.86323 -12.51701 -12.43481 -12.32122 -12.21658 -11.94576 -11.89805 -11.82634 -11.58619 -11.38394 -11.11336 -11.00833 -10.58702 -10.53589 -10.08918 -8.67333 -7.86064 -5.32206 1.47387 1.49776 1.58123 1.59588 2.17940 2.51944 3.02798 3.29226 3.42829 3.59316 3.74577 3.92571 3.98680 4.01016 4.06706 4.19699 4.30027 4.39727 4.46247 4.56638 4.60386 4.66102 4.73212 4.76438 4.83800 4.87475 4.90909 4.93188 5.00860 5.10161 5.17027 5.24192 5.32964 5.38845 5.48637 5.57709 5.67491 5.78312 5.80751 6.39704 6.52741 7.15643 7.20549 7.86888 8.39216 9.20434 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.003867 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.016103 B = 7239.082021 C = 8121.117886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.260 4.260 8 H 0.073 0.927 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.100 4.100 14 H 0.078 0.922 15 C 0.137 3.863 16 N -0.717 5.717 17 C 0.517 3.483 18 O -0.582 6.582 19 C -0.145 4.145 20 H 0.140 0.860 21 C -0.146 4.146 22 C 0.043 3.957 23 O -0.403 6.403 24 C 0.055 3.945 25 C 0.153 3.847 26 H 0.248 0.752 27 H -0.009 1.009 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.412 0.588 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.673 -13.419 -1.795 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.222 1.222 6 H -0.220 1.220 7 C -0.390 4.390 8 H 0.091 0.909 9 N -0.333 5.333 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.096 0.904 15 C 0.013 3.987 16 N -0.368 5.368 17 C 0.304 3.696 18 O -0.463 6.463 19 C -0.166 4.166 20 H 0.158 0.842 21 C -0.184 4.184 22 C -0.033 4.033 23 O -0.322 6.322 24 C -0.022 4.022 25 C 0.027 3.973 26 H 0.057 0.943 27 H 0.009 0.991 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 12.221 -14.083 -1.526 18.709 hybrid contribution -0.249 1.575 -0.317 1.625 sum 11.973 -12.508 -1.843 17.412 Atomic orbital electron populations 1.70207 1.06837 1.25692 1.55604 1.25814 0.95966 1.01586 1.01382 0.85232 0.78887 0.79919 0.76562 1.18586 1.22208 1.21993 1.19598 0.93005 0.85819 1.40626 0.90928 1.44320 1.35855 1.02331 1.50767 1.20616 0.87707 0.97712 0.89222 1.21998 1.00948 0.95907 0.98038 1.21344 0.96624 0.96785 0.98863 1.21714 0.99031 0.93412 0.97842 0.90413 1.21246 0.85253 0.96716 0.95481 1.46010 1.24428 1.12158 1.54242 1.20890 0.87185 0.82933 0.78574 1.90645 1.62257 1.31312 1.62047 1.22820 0.92226 1.01768 0.99786 0.84204 1.23002 0.98279 0.95005 1.02151 1.23619 0.96825 0.97104 0.85759 1.89128 1.84456 1.25782 1.32844 1.23563 0.93525 0.86603 0.98548 1.21024 0.97188 0.85669 0.93372 0.94251 0.99051 0.93049 0.91357 0.92756 0.92749 0.90335 0.91419 0.92636 0.75098 0.90930 0.87526 0.88737 0.89628 0.88094 0.88951 0.92160 0.97746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.01 11.19 21.65 0.24 -54.76 16 2 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 3 Si 0.97 43.65 29.59 68.60 2.03 45.68 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.26 -13.74 9.58 84.03 0.81 -12.94 16 8 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 9 N -0.61 -29.47 2.99 -699.06 -2.09 -31.56 16 10 C 0.17 8.24 5.30 86.36 0.46 8.69 16 11 C -0.13 -4.68 6.08 30.67 0.19 -4.49 16 12 C -0.10 -2.99 5.17 30.62 0.16 -2.83 16 13 C -0.10 -3.02 2.37 -10.71 -0.03 -3.04 16 14 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 15 C 0.14 3.73 5.07 86.38 0.44 4.16 16 16 N -0.72 -17.18 5.14 -463.07 -2.38 -19.57 16 17 C 0.52 13.27 7.07 87.65 0.62 13.89 16 18 O -0.58 -19.75 15.28 -3.05 -0.05 -19.80 16 19 C -0.14 -2.54 3.51 -10.52 -0.04 -2.58 16 20 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 21 C -0.15 -2.49 6.67 31.61 0.21 -2.28 16 22 C 0.04 0.68 7.63 72.49 0.55 1.23 16 23 O -0.40 -8.81 11.65 -148.98 -1.74 -10.54 16 24 C 0.05 0.90 7.17 72.49 0.52 1.41 16 25 C 0.15 5.88 5.60 86.36 0.48 6.37 16 26 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 27 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 28 H 0.05 2.79 6.06 -2.39 -0.01 2.77 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.41 8.32 7.70 -92.71 -0.71 7.61 16 36 H 0.07 1.68 6.50 -2.39 -0.02 1.66 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.55 7.72 -2.38 -0.02 1.53 16 42 H 0.06 2.15 7.14 -2.39 -0.02 2.13 16 43 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -69.97 338.62 1.08 -68.89 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.28 Total: 16.49 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 4.79 Total: 5.17 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -4.23 Total: -105.89 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.78 Total: -30.34 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -69.97 1.08 -68.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359717336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.014 kcal (2) G-P(sol) polarization free energy of solvation -69.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds