Wall clock time and date at job start Fri Apr 10 2020 17:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47268 * 270.00042 * 3 2 1 5 5 H 1.48502 * 109.47416 * 30.00370 * 3 2 1 6 6 H 1.48507 * 109.47127 * 150.00096 * 3 2 1 7 7 C 1.38805 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99642 * 163.11803 * 7 2 1 9 9 N 1.36942 * 120.00309 * 343.11515 * 7 2 1 10 10 C 1.46921 * 120.62733 * 331.88271 * 9 7 2 11 11 C 1.53187 * 108.77777 * 233.33307 * 10 9 7 12 12 C 1.53047 * 109.31359 * 305.36859 * 11 10 9 13 13 C 1.53044 * 109.53637 * 61.36311 * 12 11 10 14 14 H 1.08999 * 109.49405 * 58.61862 * 13 12 11 15 15 C 1.52993 * 109.49696 * 178.68524 * 13 12 11 16 16 N 1.46499 * 109.47421 * 185.00183 * 15 13 12 17 17 C 1.34774 * 120.00248 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99926 * 179.97438 * 17 16 15 20 20 H 1.08996 * 110.74997 * 59.30031 * 19 17 16 21 21 C 1.55308 * 110.84919 * 182.77089 * 19 17 16 22 22 C 1.55204 * 100.82772 * 152.17673 * 21 19 17 23 23 O 1.43644 * 105.26204 * 323.82120 * 22 21 19 24 24 C 1.43242 * 109.97145 * 24.28186 * 23 22 21 25 25 C 1.46918 * 120.63083 * 151.60628 * 9 7 2 26 26 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.58788 * 353.12197 * 10 9 7 28 28 H 1.09005 * 109.58640 * 113.40441 * 10 9 7 29 29 H 1.08996 * 109.49722 * 65.31879 * 11 10 9 30 30 H 1.09005 * 109.50165 * 185.41532 * 11 10 9 31 31 H 1.08997 * 109.45984 * 181.38483 * 12 11 10 32 32 H 1.08996 * 109.45818 * 301.34563 * 12 11 10 33 33 H 1.08998 * 109.47162 * 304.99931 * 15 13 12 34 34 H 1.08999 * 109.47541 * 64.99673 * 15 13 12 35 35 H 0.96996 * 119.99569 * 359.97438 * 16 15 13 36 36 H 1.08992 * 111.12628 * 270.24482 * 21 19 17 37 37 H 1.09006 * 111.12227 * 34.40619 * 21 19 17 38 38 H 1.08994 * 110.37492 * 204.80007 * 22 21 19 39 39 H 1.09011 * 110.12294 * 82.71053 * 22 21 19 40 40 H 1.08996 * 109.82915 * 238.77356 * 24 23 22 41 41 H 1.09006 * 109.90356 * 117.84832 * 24 23 22 42 42 H 1.08999 * 109.58654 * 246.45952 * 25 9 7 43 43 H 1.09008 * 109.59136 * 6.88016 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0554 -1.2221 -0.2722 9 7 1.3699 -2.3627 0.3434 10 6 0.2248 -2.3413 1.2637 11 6 0.4922 -3.3260 2.4063 12 6 0.8039 -4.7061 1.8227 13 6 2.0606 -4.6221 0.9534 14 1 2.8958 -4.2636 1.5550 15 6 2.3902 -6.0087 0.3969 16 7 3.6573 -5.9522 -0.3361 17 6 4.1502 -7.0642 -0.9166 18 8 3.5444 -8.1116 -0.8326 19 6 5.4534 -7.0060 -1.6711 20 1 6.2623 -6.6754 -1.0196 21 6 5.7849 -8.3828 -2.3088 22 6 6.6351 -7.9413 -3.5299 23 8 6.0382 -6.7159 -3.9831 24 6 5.3326 -6.0879 -2.9063 25 6 1.8110 -3.6520 -0.2057 26 1 -0.4850 0.8400 0.0004 27 1 0.1001 -1.3370 1.6686 28 1 -0.6789 -2.6348 0.7296 29 1 1.3420 -2.9792 2.9941 30 1 -0.3894 -3.3914 3.0441 31 1 0.9703 -5.4144 2.6343 32 1 -0.0364 -5.0415 1.2149 33 1 2.4774 -6.7188 1.2192 34 1 1.5949 -6.3284 -0.2764 35 1 4.1416 -5.1145 -0.4036 36 1 6.3652 -9.0027 -1.6255 37 1 4.8780 -8.8963 -2.6282 38 1 6.5921 -8.6961 -4.3150 39 1 7.6676 -7.7693 -3.2254 40 1 4.2833 -5.9644 -3.1741 41 1 5.7756 -5.1158 -2.6893 42 1 1.0372 -4.0548 -0.8592 43 1 2.7329 -3.5126 -0.7704 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359717338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:42 Heat of formation + Delta-G solvation = -76.578881 kcal Electronic energy + Delta-G solvation = -22779.468595 eV Core-core repulsion = 19438.480676 eV Total energy + Delta-G solvation = -3340.987919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.44611 -38.74328 -37.73092 -34.89703 -33.11591 -32.47716 -30.58432 -30.45596 -29.38686 -25.67730 -25.28720 -23.35801 -22.44537 -22.04857 -20.95242 -20.18530 -19.06307 -17.66214 -16.90399 -16.63789 -16.10267 -15.36055 -15.25593 -14.84880 -14.77691 -14.17122 -13.91173 -13.54985 -13.51936 -13.41796 -12.83425 -12.56740 -12.35402 -12.22902 -12.16272 -11.72493 -11.53641 -11.33082 -11.21142 -11.04636 -10.73257 -10.54074 -10.28352 -10.22259 -10.06589 -9.93792 -9.72033 -9.56861 -9.46000 -9.01032 -8.50021 -6.70853 -5.82710 -3.26115 2.53222 3.11570 3.34246 3.41670 3.43068 3.63973 4.05459 4.44659 4.56103 4.64257 4.85657 4.92872 4.98690 5.07461 5.25935 5.39228 5.41665 5.44201 5.46601 5.53069 5.58379 5.63426 5.78424 5.88280 5.90261 5.95755 6.18962 6.28126 6.33259 6.43966 6.54869 6.66067 6.69232 6.72910 6.81859 6.91871 7.36292 7.48740 7.63956 7.74724 8.16222 8.40776 9.16960 9.80376 10.37289 11.25562 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018144 B = 0.004150 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.873903 B = 6745.914574 C = 8015.816584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.126 3.874 16 N -0.721 5.721 17 C 0.522 3.478 18 O -0.542 6.542 19 C -0.149 4.149 20 H 0.111 0.889 21 C -0.135 4.135 22 C 0.050 3.950 23 O -0.380 6.380 24 C 0.063 3.937 25 C 0.154 3.846 26 H 0.254 0.746 27 H 0.086 0.914 28 H 0.018 0.982 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.404 0.596 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.018 0.982 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.097 -13.407 -0.495 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.002 3.998 16 N -0.372 5.372 17 C 0.308 3.692 18 O -0.419 6.419 19 C -0.170 4.170 20 H 0.129 0.871 21 C -0.173 4.173 22 C -0.027 4.027 23 O -0.299 6.299 24 C -0.014 4.014 25 C 0.027 3.973 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.239 0.761 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.541 -13.899 -0.641 16.871 hybrid contribution 0.594 1.262 0.295 1.425 sum 10.135 -12.637 -0.346 16.203 Atomic orbital electron populations 1.70033 1.05302 1.25563 1.53622 1.25047 0.95261 0.98424 1.00745 0.86325 0.79158 0.83687 0.77743 1.21353 1.21541 1.20488 1.19139 0.92458 0.84789 1.42153 0.91776 1.44040 1.35908 1.01368 1.50044 1.20790 0.88536 0.98224 0.88102 1.22167 1.00114 0.95957 0.99817 1.21342 0.96718 0.97765 0.97958 1.21958 0.98893 0.93554 0.99429 0.90863 1.21492 0.84682 0.98101 0.95479 1.46114 1.24812 1.11790 1.54472 1.20135 0.86249 0.83837 0.79018 1.90694 1.60631 1.30005 1.60588 1.22947 0.97177 0.98642 0.98276 0.87094 1.23206 1.01666 0.95580 0.96855 1.23477 0.96366 0.86444 0.96393 1.88430 1.70287 1.36815 1.34398 1.23094 0.98104 0.95554 0.84695 1.20897 0.97486 0.86883 0.92049 0.93589 0.89604 0.96433 0.92751 0.93159 0.93453 0.92462 0.91934 0.91502 0.76117 0.89421 0.88873 0.89393 0.91997 0.90505 0.90175 0.96373 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.74 11.20 55.49 0.62 -25.12 16 2 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 3 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.78 9.58 -15.06 -0.14 -6.92 16 8 H 0.06 1.65 7.88 -52.48 -0.41 1.23 16 9 N -0.59 -14.23 2.99 -172.33 -0.52 -14.75 16 10 C 0.17 3.93 5.29 -3.72 -0.02 3.91 16 11 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 12 C -0.10 -1.60 5.17 -26.68 -0.14 -1.73 16 13 C -0.12 -1.86 2.37 -90.50 -0.21 -2.08 16 14 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 15 C 0.13 1.76 5.07 -4.05 -0.02 1.74 16 16 N -0.72 -9.00 5.31 -60.30 -0.32 -9.32 16 17 C 0.52 6.77 7.01 -10.99 -0.08 6.70 16 18 O -0.54 -8.93 15.72 5.56 0.09 -8.84 16 19 C -0.15 -1.47 3.38 -89.83 -0.30 -1.77 16 20 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.14 -1.26 6.28 -24.34 -0.15 -1.41 16 22 C 0.05 0.43 7.78 38.32 0.30 0.73 16 23 O -0.38 -4.48 11.36 -35.23 -0.40 -4.88 16 24 C 0.06 0.66 7.38 37.88 0.28 0.94 16 25 C 0.15 3.00 5.60 -3.72 -0.02 2.98 16 26 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.40 4.47 7.71 -40.82 -0.31 4.15 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.03 7.42 -51.93 -0.39 0.65 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.08 0.89 7.81 -51.93 -0.41 0.48 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.92 7.14 -51.92 -0.37 0.55 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -31.21 339.73 -8.46 -39.67 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.26 Total: 1.62 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -0.76 Total: 0.34 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.21 Total: -49.18 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.31 Total: -13.71 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.21 -8.46 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359717338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.908 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds