Wall clock time and date at job start Fri Apr 10 2020 17:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47422 * 2 1 4 4 C 1.53000 * 109.47096 * 240.00092 * 2 1 3 5 5 C 1.50702 * 109.47452 * 59.99741 * 4 2 1 6 6 H 1.08003 * 119.99397 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00210 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47249 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46789 * 120.00685 * 9 7 5 12 12 H 1.48495 * 109.46740 * 240.00305 * 9 7 5 13 13 C 1.53000 * 109.47133 * 120.00133 * 2 1 3 14 14 N 1.46500 * 109.47136 * 299.99886 * 13 2 1 15 15 C 1.34782 * 119.99979 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99955 * 359.97438 * 15 14 13 17 17 C 1.50693 * 119.99642 * 180.02562 * 15 14 13 18 18 N 1.46505 * 109.47069 * 179.97438 * 17 15 14 19 19 C 1.36596 * 127.12086 * 265.02444 * 18 17 15 20 20 N 1.30338 * 107.28065 * 179.97438 * 19 18 17 21 21 N 1.28534 * 109.99250 * 359.97438 * 20 19 18 22 22 C 1.31034 * 109.86009 * 0.02562 * 21 20 19 23 23 O 1.35534 * 126.44360 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.47389 * 300.00047 * 1 2 3 25 25 H 1.09002 * 109.46968 * 59.99937 * 1 2 3 26 26 H 1.09007 * 109.47516 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47069 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.46946 * 300.00092 * 3 2 1 29 29 H 1.08996 * 109.46749 * 59.99770 * 3 2 1 30 30 H 1.08996 * 109.47343 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47126 * 299.99976 * 4 2 1 32 32 H 0.96998 * 119.99808 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47239 * 179.97438 * 13 2 1 34 34 H 1.09001 * 109.47167 * 59.99976 * 13 2 1 35 35 H 0.96998 * 120.00075 * 0.02562 * 14 13 2 36 36 H 1.08995 * 109.47747 * 60.00241 * 17 15 14 37 37 H 1.08995 * 109.47504 * 299.99521 * 17 15 14 38 38 H 1.07995 * 126.36031 * 359.97438 * 19 18 17 39 39 H 0.96696 * 113.99864 * 90.02635 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4798 6 1 0.9170 0.8674 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5509 -3.8526 9 14 1.2489 0.3994 -5.2572 10 1 0.4243 1.5664 -4.8530 11 1 2.4042 0.8661 -6.0651 12 1 0.4242 -0.5338 -6.0659 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5749 -1.4770 3.7808 17 6 1.3749 0.2192 4.8999 18 7 1.8633 -0.4714 6.0962 19 6 1.2078 -1.4238 6.8236 20 7 1.9946 -1.7730 7.8022 21 7 3.0939 -1.1099 7.7404 22 6 3.0663 -0.2970 6.7130 23 8 4.0489 0.5566 6.3350 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8899 30 1 3.1299 -0.7217 -1.2491 31 1 1.6766 -1.7489 -1.2493 32 1 2.8615 -1.8822 -4.7336 33 1 3.1299 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9937 0.7578 2.3564 36 1 0.2849 0.2184 4.9001 37 1 1.7375 1.2471 4.8999 38 1 0.2210 -1.8148 6.6247 39 1 4.6860 0.1737 5.7166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360412712.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:45 Heat of formation + Delta-G solvation = -1.405550 kcal Electronic energy + Delta-G solvation = -22052.488722 eV Core-core repulsion = 18611.220219 eV Total energy + Delta-G solvation = -3441.268502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.25107 -39.99533 -37.87419 -37.41437 -35.04577 -33.94726 -32.26979 -30.07086 -29.15980 -27.20501 -26.69510 -26.09386 -23.28124 -22.70252 -22.44524 -20.85715 -19.31881 -18.46854 -17.74717 -17.15177 -16.44186 -16.29838 -15.95780 -15.44950 -15.24306 -14.63785 -14.58478 -14.08537 -13.90948 -13.27090 -12.99691 -12.95120 -12.66027 -12.28310 -12.18325 -11.88518 -11.34429 -11.15076 -11.12286 -10.94080 -10.79167 -10.58616 -10.49825 -10.37985 -10.05516 -10.05321 -9.41108 -9.33623 -9.11512 -9.05360 -8.46748 -6.10419 -4.12478 1.24159 1.85559 2.24018 2.54160 2.95780 3.22748 3.31438 3.32869 3.55114 4.10704 4.27085 4.35519 4.39465 4.49518 4.98014 5.24979 5.27058 5.35413 5.41565 5.54573 5.59926 5.95626 5.99728 6.03775 6.17494 6.18120 6.24064 6.45959 6.52222 6.87871 6.90881 6.94903 7.03484 7.28689 7.50886 7.61271 7.87154 7.91864 8.28136 8.41812 8.92405 9.51559 11.00985 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.043672 B = 0.002990 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.985468 B = 9360.833118 C = 9381.282841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.514 4.514 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.128 3.872 14 N -0.711 5.711 15 C 0.490 3.510 16 O -0.531 6.531 17 C 0.085 3.915 18 N -0.472 5.472 19 C 0.175 3.825 20 N -0.282 5.282 21 N -0.287 5.287 22 C 0.363 3.637 23 O -0.440 6.440 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.402 0.598 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.225 0.775 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 6.366 15.368 17.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.552 4.552 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.005 3.995 14 N -0.363 5.363 15 C 0.273 3.727 16 O -0.408 6.408 17 C -0.042 4.042 18 N -0.175 5.175 19 C -0.112 4.112 20 N -0.123 5.123 21 N -0.137 5.137 22 C 0.059 3.941 23 O -0.240 6.240 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.237 0.763 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.242 0.758 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -4.082 5.330 16.845 18.133 hybrid contribution -0.755 1.205 -2.761 3.106 sum -4.838 6.535 14.084 16.263 Atomic orbital electron populations 1.21774 0.95115 1.01259 1.00345 1.20930 0.95583 0.95915 0.94903 1.21771 1.00614 0.95760 1.00353 1.19094 0.96382 0.95242 0.89426 1.21188 1.31378 1.12162 0.90448 0.92172 1.25016 0.95227 0.95050 0.99166 1.69965 1.36804 1.22985 1.23491 0.86585 0.78646 0.79672 0.83379 1.19783 1.21077 1.21070 1.21734 0.99109 0.96138 0.82473 1.46156 1.52676 1.31906 1.05534 1.20551 0.81847 0.85391 0.84956 1.90801 1.37658 1.25808 1.86502 1.21782 1.02775 0.97732 0.81917 1.46424 1.15831 1.32577 1.22647 1.26365 1.01693 0.91201 0.91910 1.74219 0.98724 1.19750 1.19618 1.74618 1.15579 1.06365 1.17123 1.22118 0.84246 0.95213 0.92570 1.84822 1.37050 1.35300 1.66860 0.95304 0.91227 0.93272 0.93292 0.91227 0.95300 0.96338 0.96324 0.92984 0.91521 0.91465 0.76267 0.85116 0.85444 0.75846 0.73077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.05 37.15 0.30 -1.64 16 2 C -0.07 -1.21 0.54 -154.51 -0.08 -1.30 16 3 C -0.13 -1.95 8.05 37.16 0.30 -1.65 16 4 C 0.04 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -12.89 7.65 -34.44 -0.26 -13.16 16 6 H 0.06 1.45 5.68 -52.48 -0.30 1.15 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 9 Si 0.89 20.39 29.54 -169.99 -5.02 15.36 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.13 1.91 4.56 -4.04 -0.02 1.89 16 14 N -0.71 -7.59 4.96 -60.30 -0.30 -7.89 16 15 C 0.49 5.32 7.90 -10.99 -0.09 5.23 16 16 O -0.53 -8.34 16.43 5.55 0.09 -8.25 16 17 C 0.09 0.57 6.69 -5.19 -0.03 0.54 16 18 N -0.47 -4.71 2.29 -121.05 -0.28 -4.99 16 19 C 0.18 1.77 12.80 -89.07 -1.14 0.63 16 20 N -0.28 -3.92 12.18 29.87 0.36 -3.55 16 21 N -0.29 -4.27 12.22 29.65 0.36 -3.91 16 22 C 0.36 4.49 9.22 -88.76 -0.82 3.67 16 23 O -0.44 -4.46 13.62 -18.30 -0.25 -4.71 16 24 H 0.03 0.33 6.86 -51.93 -0.36 -0.03 16 25 H 0.07 1.18 6.62 -51.93 -0.34 0.83 16 26 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.18 6.62 -51.93 -0.34 0.84 16 29 H 0.03 0.33 6.86 -51.93 -0.36 -0.03 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.40 3.24 6.16 -40.82 -0.25 2.99 16 36 H 0.13 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.23 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.41 2.77 9.06 45.56 0.41 3.18 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -34.77 330.16 -5.85 -40.62 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.48 Total: 0.76 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.06 Total: -3.65 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.89 Total: -45.10 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.16 Total: -12.96 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.77 -5.85 -40.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360412712.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.211 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds