Wall clock time and date at job start Fri Apr 10 2020 17:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47422 * 2 1 4 4 C 1.53000 * 109.47096 * 240.00092 * 2 1 3 5 5 C 1.50702 * 109.47452 * 59.99741 * 4 2 1 6 6 H 1.08003 * 119.99397 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00210 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47249 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46789 * 120.00685 * 9 7 5 12 12 H 1.48495 * 109.46740 * 240.00305 * 9 7 5 13 13 C 1.53000 * 109.47133 * 120.00133 * 2 1 3 14 14 N 1.46500 * 109.47136 * 299.99886 * 13 2 1 15 15 C 1.34782 * 119.99979 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99955 * 359.97438 * 15 14 13 17 17 C 1.50693 * 119.99642 * 180.02562 * 15 14 13 18 18 N 1.46505 * 109.47069 * 179.97438 * 17 15 14 19 19 C 1.36596 * 127.12086 * 265.02444 * 18 17 15 20 20 N 1.30338 * 107.28065 * 179.97438 * 19 18 17 21 21 N 1.28534 * 109.99250 * 359.97438 * 20 19 18 22 22 C 1.31034 * 109.86009 * 0.02562 * 21 20 19 23 23 O 1.35534 * 126.44360 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.47389 * 300.00047 * 1 2 3 25 25 H 1.09002 * 109.46968 * 59.99937 * 1 2 3 26 26 H 1.09007 * 109.47516 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47069 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.46946 * 300.00092 * 3 2 1 29 29 H 1.08996 * 109.46749 * 59.99770 * 3 2 1 30 30 H 1.08996 * 109.47343 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47126 * 299.99976 * 4 2 1 32 32 H 0.96998 * 119.99808 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47239 * 179.97438 * 13 2 1 34 34 H 1.09001 * 109.47167 * 59.99976 * 13 2 1 35 35 H 0.96998 * 120.00075 * 0.02562 * 14 13 2 36 36 H 1.08995 * 109.47747 * 60.00241 * 17 15 14 37 37 H 1.08995 * 109.47504 * 299.99521 * 17 15 14 38 38 H 1.07995 * 126.36031 * 359.97438 * 19 18 17 39 39 H 0.96696 * 113.99864 * 90.02635 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0109 -2.4798 6 1 0.9170 0.8674 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5509 -3.8526 9 14 1.2489 0.3994 -5.2572 10 1 0.4243 1.5664 -4.8530 11 1 2.4042 0.8661 -6.0651 12 1 0.4242 -0.5338 -6.0659 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5749 -1.4770 3.7808 17 6 1.3749 0.2192 4.8999 18 7 1.8633 -0.4714 6.0962 19 6 1.2078 -1.4238 6.8236 20 7 1.9946 -1.7730 7.8022 21 7 3.0939 -1.1099 7.7404 22 6 3.0663 -0.2970 6.7130 23 8 4.0489 0.5566 6.3350 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8899 30 1 3.1299 -0.7217 -1.2491 31 1 1.6766 -1.7489 -1.2493 32 1 2.8615 -1.8822 -4.7336 33 1 3.1299 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9937 0.7578 2.3564 36 1 0.2849 0.2184 4.9001 37 1 1.7375 1.2471 4.8999 38 1 0.2210 -1.8148 6.6247 39 1 4.6860 0.1737 5.7166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360412712.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:44 Heat of formation + Delta-G solvation = -28.916244 kcal Electronic energy + Delta-G solvation = -22053.681675 eV Core-core repulsion = 18611.220219 eV Total energy + Delta-G solvation = -3442.461455 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.06966 -40.98206 -38.78022 -38.59687 -35.84515 -35.32601 -33.99317 -30.92648 -30.06293 -28.94000 -27.93612 -27.25992 -24.92299 -23.56445 -23.37851 -21.79949 -20.29210 -19.58957 -18.57493 -18.38639 -18.01897 -17.20102 -16.80890 -16.52978 -16.31036 -16.10640 -15.51730 -15.28397 -15.01445 -14.64567 -14.32952 -13.98706 -13.93361 -13.42219 -13.36735 -12.89426 -12.77624 -12.70185 -12.58441 -12.32775 -12.23519 -12.01006 -11.94915 -11.53331 -11.31902 -11.15139 -10.89141 -10.73038 -10.53188 -10.28903 -10.17063 -8.15252 -6.22803 0.45898 1.15718 1.41137 1.42007 1.43019 1.53781 1.69489 2.09684 2.43850 2.81249 3.20053 3.55421 3.61196 3.77177 3.97102 4.08263 4.13413 4.22662 4.23259 4.63234 4.68355 4.72242 4.78106 4.85353 4.98196 5.09646 5.15243 5.34878 5.45171 5.52863 5.53903 5.56192 5.57438 5.81367 5.90332 6.28509 6.32136 6.46410 6.93650 7.10735 7.45620 7.56931 8.97389 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.043672 B = 0.002990 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.985468 B = 9360.833118 C = 9381.282841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.956 3.044 10 H -0.255 1.255 11 H -0.287 1.287 12 H -0.286 1.286 13 C 0.143 3.857 14 N -0.696 5.696 15 C 0.493 3.507 16 O -0.584 6.584 17 C 0.093 3.907 18 N -0.471 5.471 19 C 0.191 3.809 20 N -0.329 5.329 21 N -0.334 5.334 22 C 0.357 3.643 23 O -0.441 6.441 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.077 0.923 30 H -0.016 1.016 31 H -0.016 1.016 32 H 0.259 0.741 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.420 0.580 36 H 0.183 0.817 37 H 0.158 0.842 38 H 0.270 0.730 39 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.563 9.027 16.139 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.000 4.000 5 C -0.549 4.549 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.782 3.218 10 H -0.178 1.178 11 H -0.213 1.213 12 H -0.212 1.212 13 C 0.019 3.981 14 N -0.349 5.349 15 C 0.278 3.722 16 O -0.464 6.464 17 C -0.033 4.033 18 N -0.173 5.173 19 C -0.097 4.097 20 N -0.168 5.168 21 N -0.184 5.184 22 C 0.051 3.949 23 O -0.243 6.243 24 H 0.097 0.903 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.002 0.998 31 H 0.003 0.997 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.259 0.741 36 H 0.200 0.800 37 H 0.175 0.825 38 H 0.285 0.715 39 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -6.648 8.042 17.625 20.482 hybrid contribution 0.052 0.353 -2.998 3.019 sum -6.596 8.395 14.627 18.109 Atomic orbital electron populations 1.21715 0.93251 1.01041 1.01998 1.20711 0.96937 0.96310 0.92577 1.21712 0.99851 0.94497 1.01955 1.18990 0.94185 0.94203 0.92599 1.21642 1.30215 1.12023 0.91020 0.90742 1.25940 0.95717 0.95858 1.02759 1.70122 1.38909 1.25065 1.24002 0.85526 0.78023 0.78897 0.79379 1.17815 1.21279 1.21223 1.21195 0.97781 0.95382 0.83740 1.45826 1.52720 1.32101 1.04270 1.21278 0.80480 0.84570 0.85826 1.90803 1.39983 1.28412 1.87228 1.22113 1.05516 0.97614 0.78011 1.46570 1.14976 1.32596 1.23205 1.27281 1.02397 0.89722 0.90256 1.74113 0.99412 1.21230 1.22083 1.74484 1.16816 1.07935 1.19151 1.22212 0.85303 0.94876 0.92519 1.84788 1.37167 1.35016 1.67351 0.90279 0.92855 0.94494 0.94607 0.92829 0.90395 0.99798 0.99731 0.93242 0.93635 0.93526 0.74080 0.80007 0.82450 0.71451 0.71627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.40 8.05 71.98 0.58 -2.82 16 2 C -0.06 -2.10 0.54 -52.18 -0.03 -2.13 16 3 C -0.12 -3.45 8.05 71.98 0.58 -2.87 16 4 C 0.04 1.79 4.04 29.85 0.12 1.91 16 5 C -0.51 -25.90 7.65 25.60 0.20 -25.71 16 6 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -55.64 13.29 21.45 0.28 -55.35 16 9 Si 0.96 41.99 29.54 68.60 2.03 44.02 16 10 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 13 C 0.14 4.19 4.56 86.38 0.39 4.58 16 14 N -0.70 -12.38 4.96 -463.06 -2.30 -14.68 16 15 C 0.49 9.09 7.90 87.65 0.69 9.78 16 16 O -0.58 -17.66 16.43 -3.04 -0.05 -17.71 16 17 C 0.09 0.76 6.69 85.63 0.57 1.34 16 18 N -0.47 -7.93 2.29 -647.68 -1.48 -9.41 16 19 C 0.19 3.32 12.80 179.81 2.30 5.62 16 20 N -0.33 -8.89 12.18 -59.41 -0.72 -9.61 16 21 N -0.33 -9.94 12.22 -173.67 -2.12 -12.06 16 22 C 0.36 8.35 9.22 179.70 1.66 10.00 16 23 O -0.44 -8.34 13.62 -88.38 -1.20 -9.54 16 24 H 0.08 1.39 6.86 -2.38 -0.02 1.38 16 25 H 0.05 1.67 6.62 -2.39 -0.02 1.65 16 26 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.05 1.69 6.62 -2.39 -0.02 1.67 16 29 H 0.08 1.41 6.86 -2.39 -0.02 1.40 16 30 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 31 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.42 4.33 6.16 -92.71 -0.57 3.76 16 36 H 0.18 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.16 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.27 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.42 5.36 9.06 -74.06 -0.67 4.69 16 Total: -1.00 -82.50 330.16 1.81 -80.70 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -0.15 Total: 3.80 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 7.53 Total: -0.14 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -6.34 Total: -101.11 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -1.25 Total: -27.26 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -82.50 1.81 -80.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360412712.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.779 kcal (2) G-P(sol) polarization free energy of solvation -82.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds