Wall clock time and date at job start Fri Apr 10 2020 17:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99674 * 2 1 4 4 H 1.48494 * 109.47176 * 270.00106 * 3 2 1 5 5 H 1.48505 * 109.46845 * 30.00310 * 3 2 1 6 6 H 1.48503 * 109.46862 * 150.00029 * 3 2 1 7 7 C 1.37870 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00326 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99763 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46887 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47173 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99670 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00369 * 180.27405 * 11 10 9 14 14 C 1.46501 * 120.00144 * 179.72458 * 13 11 10 15 15 C 1.52996 * 109.46968 * 174.82981 * 14 13 11 16 16 N 1.46906 * 115.55178 * 274.88503 * 15 14 13 17 17 C 1.47010 * 110.99773 * 58.39559 * 16 15 14 18 18 C 1.53098 * 109.25845 * 177.60895 * 17 16 15 19 19 O 1.43012 * 109.25978 * 56.85015 * 18 17 16 20 20 C 1.43016 * 113.73704 * 301.33210 * 19 18 17 21 21 C 1.47012 * 110.99962 * 294.76394 * 16 15 14 22 22 C 1.53006 * 117.49920 * 129.21709 * 15 14 13 23 23 C 1.53006 * 117.50135 * 60.55805 * 15 14 13 24 24 H 0.97000 * 120.00346 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47146 * 60.00937 * 9 7 2 26 26 H 1.08999 * 109.47268 * 300.00546 * 9 7 2 27 27 H 1.08998 * 109.47541 * 60.00065 * 10 9 7 28 28 H 1.08999 * 109.47178 * 300.00069 * 10 9 7 29 29 H 0.97000 * 119.99649 * 359.72989 * 13 11 10 30 30 H 1.08998 * 109.47228 * 294.83086 * 14 13 11 31 31 H 1.09005 * 109.47005 * 54.82982 * 14 13 11 32 32 H 1.09003 * 109.50755 * 297.54209 * 17 16 15 33 33 H 1.09001 * 109.50955 * 57.67494 * 17 16 15 34 34 H 1.09003 * 109.50367 * 296.91202 * 18 17 16 35 35 H 1.09002 * 109.54336 * 176.80756 * 18 17 16 36 36 H 1.09000 * 109.50661 * 298.73769 * 20 19 18 37 37 H 1.08995 * 109.54529 * 178.62555 * 20 19 18 38 38 H 1.09001 * 109.50609 * 302.32665 * 21 16 15 39 39 H 1.08998 * 109.50876 * 62.40983 * 21 16 15 40 40 H 1.08997 * 117.49354 * 359.97438 * 22 15 14 41 41 H 1.08997 * 117.49783 * 145.01739 * 22 15 14 42 42 H 1.08995 * 117.49959 * 214.98045 * 23 15 14 43 43 H 1.09000 * 117.49462 * 359.96942 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4921 -4.9671 -0.0012 12 8 0.2792 -4.9672 -0.0021 13 7 2.1660 -6.1343 0.0043 14 6 1.4335 -7.4030 0.0098 15 6 2.4227 -8.5635 -0.1147 16 7 2.8155 -8.9171 -1.4854 17 6 3.4243 -7.7686 -2.1718 18 6 3.8717 -8.1963 -3.5721 19 8 2.7492 -8.7210 -4.2862 20 6 2.1322 -9.8412 -3.6462 21 6 1.6672 -9.4301 -2.2466 22 6 2.3101 -9.7001 0.9034 23 6 3.4777 -8.7135 0.9834 24 1 -0.4850 0.8400 0.0004 25 1 0.6243 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8721 -3.6043 0.8894 28 1 2.8721 -3.6042 -0.8905 29 1 3.1360 -6.1342 0.0047 30 1 0.8778 -7.4978 0.9427 31 1 0.7394 -7.4255 -0.8304 32 1 2.6935 -6.9639 -2.2532 33 1 4.2876 -7.4210 -1.6043 34 1 4.6417 -8.9635 -3.4896 35 1 4.2723 -7.3345 -4.1060 36 1 2.8515 -10.6562 -3.5658 37 1 1.2743 -10.1695 -4.2329 38 1 1.2477 -10.2956 -1.7336 39 1 0.9080 -8.6523 -2.3285 40 1 1.5315 -9.6209 1.6620 41 1 2.5277 -10.7102 0.5562 42 1 4.4629 -9.0748 0.6888 43 1 3.4672 -7.9850 1.7941 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360493507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:46 Heat of formation + Delta-G solvation = -58.635781 kcal Electronic energy + Delta-G solvation = -22700.988099 eV Core-core repulsion = 19360.778251 eV Total energy + Delta-G solvation = -3340.209848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.41052 -38.99871 -37.82975 -34.08364 -33.79486 -33.44385 -31.41863 -31.00471 -27.72836 -26.75533 -25.12251 -24.38247 -22.51166 -21.60363 -21.18826 -19.97904 -19.28656 -17.24728 -16.71525 -16.33412 -15.87607 -15.61612 -15.55141 -15.24934 -15.12856 -14.84514 -14.56134 -14.39449 -13.80737 -13.08528 -13.03842 -12.73147 -12.67573 -12.17774 -11.98083 -11.79405 -11.74873 -11.60235 -11.17025 -10.93327 -10.90123 -10.73174 -10.60498 -10.33733 -9.96563 -9.91416 -9.67126 -9.18325 -9.02679 -8.88567 -8.61140 -8.32020 -5.96006 -4.00618 3.16214 3.23217 3.30387 3.33394 3.39386 3.41936 3.64859 3.76300 4.36299 4.47501 4.58604 4.63234 4.72726 4.74843 4.90353 4.98996 5.07795 5.19725 5.27802 5.36500 5.38908 5.38962 5.44447 5.51549 5.60371 5.63260 5.69440 5.77303 5.86664 5.91176 6.21173 6.22714 6.56736 6.69334 6.72254 6.88262 6.89961 7.74045 7.85433 7.85814 8.07005 8.38395 8.76026 9.07910 9.63011 11.14954 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.003491 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.994306 B = 8018.623771 C = 8549.744145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.508 3.492 12 O -0.535 6.535 13 N -0.741 5.741 14 C 0.133 3.867 15 C 0.011 3.989 16 N -0.497 5.497 17 C 0.013 3.987 18 C 0.065 3.935 19 O -0.384 6.384 20 C 0.065 3.935 21 C 0.015 3.985 22 C -0.147 4.147 23 C -0.153 4.153 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.396 0.604 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.000 -23.163 -2.435 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.297 3.703 12 O -0.410 6.410 13 N -0.396 5.396 14 C 0.007 3.993 15 C -0.080 4.080 16 N -0.221 5.221 17 C -0.114 4.114 18 C -0.012 4.012 19 O -0.303 6.303 20 C -0.012 4.012 21 C -0.113 4.113 22 C -0.185 4.185 23 C -0.190 4.190 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.230 0.770 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.222 -23.331 -2.603 24.874 hybrid contribution 0.362 1.419 0.238 1.483 sum 8.584 -21.912 -2.365 23.652 Atomic orbital electron populations 1.69999 1.06069 1.26590 1.50181 1.25025 0.94820 0.99232 0.95287 0.86590 0.79766 0.83505 0.78079 1.20655 1.21216 1.19880 1.21218 0.92915 0.91007 1.51420 0.92610 1.18894 0.93163 0.89386 0.98586 1.21861 1.00707 0.91925 1.02411 1.21608 0.88673 0.85647 0.74393 1.90675 1.14511 1.87648 1.48162 1.46281 1.09963 1.05272 1.78043 1.21118 0.93603 0.82169 1.02386 1.21825 1.01272 0.97972 0.86912 1.62255 1.27983 1.31688 1.00138 1.22842 1.00381 0.92744 0.95478 1.22683 0.88338 0.99044 0.91164 1.88017 1.46139 1.48067 1.48057 1.22649 0.97835 0.88684 0.92007 1.22794 0.92754 1.00796 0.94965 1.23080 1.00939 0.95012 0.99500 1.23083 0.94817 1.02258 0.98868 0.92944 0.95868 0.95862 0.90263 0.90331 0.76968 0.91370 0.91374 0.92514 0.89590 0.92460 0.88232 0.92433 0.88449 0.89535 0.93270 0.88271 0.87972 0.87944 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.64 13.29 55.43 0.74 -26.91 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 11 C 0.51 9.85 7.83 -10.99 -0.09 9.77 16 12 O -0.53 -12.84 15.98 5.55 0.09 -12.75 16 13 N -0.74 -10.38 4.33 -60.29 -0.26 -10.64 16 14 C 0.13 1.70 5.00 -4.04 -0.02 1.68 16 15 C 0.01 0.10 1.08 -131.59 -0.14 -0.04 16 16 N -0.50 -4.78 4.80 -218.65 -1.05 -5.83 16 17 C 0.01 0.14 4.65 -3.71 -0.02 0.12 16 18 C 0.06 0.62 7.01 37.21 0.26 0.88 16 19 O -0.38 -4.43 10.83 -35.23 -0.38 -4.81 16 20 C 0.07 0.58 7.01 37.21 0.26 0.85 16 21 C 0.01 0.14 5.46 -3.71 -0.02 0.12 16 22 C -0.15 -1.15 10.10 -26.69 -0.27 -1.42 16 23 C -0.15 -1.23 9.84 -26.69 -0.26 -1.49 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.40 4.53 7.70 -40.82 -0.31 4.21 16 30 H 0.07 0.91 7.90 -51.93 -0.41 0.50 16 31 H 0.07 1.00 6.52 -51.93 -0.34 0.67 16 32 H 0.06 0.72 6.86 -51.93 -0.36 0.36 16 33 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.56 6.69 -51.93 -0.35 0.22 16 40 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -34.49 347.95 -8.84 -43.33 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.21 Total: 0.84 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -0.98 Total: -5.21 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.57 Total: -43.38 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.29 Total: -17.56 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.49 -8.84 -43.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360493507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.304 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds