Wall clock time and date at job start Fri Apr 10 2020 17:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86802 * 119.99400 * 2 1 4 4 H 1.48497 * 109.47345 * 274.98685 * 3 2 1 5 5 H 1.48498 * 109.47185 * 34.98911 * 3 2 1 6 6 H 1.48503 * 109.46757 * 154.98757 * 3 2 1 7 7 C 1.40040 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00162 * 186.14563 * 7 2 1 9 9 C 1.46376 * 120.00290 * 6.14496 * 7 2 1 10 10 O 1.21693 * 119.99665 * 353.94384 * 9 7 2 11 11 N 1.34775 * 120.00103 * 173.93915 * 9 7 2 12 12 C 1.46498 * 119.99874 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.47380 * 34.99414 * 12 11 9 14 14 C 1.53004 * 109.47126 * 275.00036 * 12 11 9 15 15 C 1.52997 * 109.47368 * 180.02562 * 14 12 11 16 16 C 1.52991 * 109.47295 * 59.99538 * 15 14 12 17 17 C 1.52994 * 109.47539 * 300.00196 * 16 15 14 18 18 C 1.53002 * 109.47208 * 155.00140 * 12 11 9 19 19 H 1.08999 * 109.47269 * 59.99849 * 18 12 11 20 20 N 1.46902 * 109.46693 * 299.99493 * 18 12 11 21 21 C 1.47010 * 111.00126 * 298.63586 * 20 18 12 22 22 C 1.53102 * 109.25594 * 177.61262 * 21 20 18 23 23 O 1.43013 * 109.26108 * 56.84486 * 22 21 20 24 24 C 1.43011 * 113.73964 * 301.33408 * 23 22 21 25 25 C 1.47016 * 110.99446 * 175.00140 * 20 18 12 26 26 H 0.96995 * 120.00580 * 359.97438 * 1 2 3 27 27 H 0.96997 * 120.00193 * 359.97438 * 11 9 7 28 28 H 1.09001 * 109.46960 * 59.99655 * 14 12 11 29 29 H 1.08999 * 109.46994 * 300.00499 * 14 12 11 30 30 H 1.09009 * 109.46751 * 299.99792 * 15 14 12 31 31 H 1.09000 * 109.46922 * 180.02562 * 15 14 12 32 32 H 1.08999 * 109.47020 * 60.00410 * 16 15 14 33 33 H 1.09004 * 109.47170 * 179.97438 * 16 15 14 34 34 H 1.08998 * 109.47805 * 179.97438 * 17 16 15 35 35 H 1.08999 * 109.47139 * 300.00140 * 17 16 15 36 36 H 1.08999 * 109.50637 * 297.54196 * 21 20 18 37 37 H 1.08998 * 109.50958 * 57.67697 * 21 20 18 38 38 H 1.09004 * 109.50426 * 296.91401 * 22 21 20 39 39 H 1.08999 * 109.54421 * 176.80822 * 22 21 20 40 40 H 1.09002 * 109.50603 * 298.72945 * 24 23 22 41 41 H 1.09001 * 109.54364 * 178.62853 * 24 23 22 42 42 H 1.08997 * 109.50671 * 302.32776 * 25 20 18 43 43 H 1.08994 * 109.50944 * 62.46233 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.3827 2.1074 -1.3947 5 1 1.4947 2.6200 0.8028 6 1 3.5869 1.4122 0.5920 7 6 2.0071 -1.2127 -0.0005 8 1 3.0824 -1.2154 0.0996 9 6 1.2816 -2.4768 -0.1368 10 8 0.0647 -2.4827 -0.1387 11 7 1.9614 -3.6340 -0.2602 12 6 1.2353 -4.8990 -0.3971 13 1 0.3249 -4.7348 -0.9735 14 6 0.8714 -5.4309 0.9905 15 6 0.1136 -6.7524 0.8476 16 6 0.9976 -7.7717 0.1264 17 6 1.3615 -7.2399 -1.2612 18 6 2.1189 -5.9187 -1.1186 19 1 3.0293 -6.0829 -0.5421 20 7 2.4682 -5.4079 -2.4509 21 6 1.2642 -5.2049 -3.2697 22 6 1.6681 -4.6175 -4.6246 23 8 2.6107 -5.4892 -5.2546 24 6 3.7958 -5.7087 -4.4848 25 6 3.4135 -6.3072 -3.1285 26 1 -0.4851 0.8400 0.0004 27 1 2.9314 -3.6292 -0.2591 28 1 0.2419 -4.7044 1.5045 29 1 1.7818 -5.5950 1.5670 30 1 -0.7968 -6.5885 0.2710 31 1 -0.1460 -7.1310 1.8362 32 1 1.9079 -7.9355 0.7029 33 1 0.4579 -8.7133 0.0250 34 1 1.9916 -7.9659 -1.7750 35 1 0.4511 -7.0761 -1.8378 36 1 0.7625 -6.1604 -3.4223 37 1 0.5899 -4.5161 -2.7608 38 1 2.1217 -3.6376 -4.4758 39 1 0.7856 -4.5178 -5.2565 40 1 4.3113 -4.7605 -4.3320 41 1 4.4525 -6.3985 -5.0150 42 1 4.3080 -6.4230 -2.5166 43 1 2.9461 -7.2803 -3.2789 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375380547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:53 Heat of formation + Delta-G solvation = -89.268228 kcal Electronic energy + Delta-G solvation = -23933.397083 eV Core-core repulsion = 20591.858913 eV Total energy + Delta-G solvation = -3341.538170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.14026 -38.22930 -36.56200 -34.75507 -32.92621 -32.09277 -31.05582 -29.79101 -28.75001 -26.29181 -25.50544 -24.01164 -22.54064 -21.60554 -20.34916 -19.41211 -19.06786 -17.14014 -16.50083 -16.00585 -15.28825 -15.17585 -15.00069 -14.88482 -14.30220 -14.26672 -14.06299 -13.67484 -13.60142 -12.88729 -12.49882 -12.45747 -12.19178 -12.08191 -11.72996 -11.46632 -11.37184 -11.16288 -10.98967 -10.88465 -10.69863 -10.61921 -10.41755 -10.29358 -10.22305 -10.11281 -9.85211 -9.46953 -8.78937 -8.06635 -7.50695 -7.33823 -6.12723 -4.55253 3.17155 3.24542 3.27810 3.85465 4.01104 4.15748 4.64862 4.68945 4.86887 4.98894 5.03996 5.13383 5.19273 5.25452 5.32235 5.38543 5.44016 5.55880 5.62864 5.64290 5.73111 5.73750 5.81533 5.81932 5.90767 5.99841 6.03810 6.09524 6.18419 6.26776 6.27465 6.39428 6.43819 6.77931 6.80912 7.14806 7.22558 7.28434 7.50281 8.05999 8.24579 8.44160 9.10187 9.67530 10.67588 10.88353 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014867 B = 0.006115 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.880673 B = 4577.932818 C = 5868.825681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.089 3.911 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.560 3.440 10 O -0.585 6.585 11 N -0.749 5.749 12 C 0.168 3.832 13 H 0.074 0.926 14 C -0.128 4.128 15 C -0.118 4.118 16 C -0.112 4.112 17 C -0.149 4.149 18 C 0.081 3.919 19 H 0.081 0.919 20 N -0.517 5.517 21 C 0.016 3.984 22 C 0.064 3.936 23 O -0.391 6.391 24 C 0.065 3.935 25 C 0.016 3.984 26 H 0.266 0.734 27 H 0.381 0.619 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.733 -13.650 -4.479 15.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.363 3.637 10 O -0.468 6.468 11 N -0.402 5.402 12 C 0.061 3.939 13 H 0.092 0.908 14 C -0.168 4.168 15 C -0.156 4.156 16 C -0.150 4.150 17 C -0.189 4.189 18 C -0.028 4.028 19 H 0.099 0.901 20 N -0.240 5.240 21 C -0.112 4.112 22 C -0.012 4.012 23 O -0.310 6.310 24 C -0.013 4.013 25 C -0.112 4.112 26 H 0.077 0.923 27 H 0.212 0.788 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.866 -13.136 -4.619 14.750 hybrid contribution 0.595 0.109 0.235 0.649 sum 5.460 -13.027 -4.384 14.789 Atomic orbital electron populations 1.70029 1.06987 1.26995 1.35891 1.25666 0.94526 1.00113 0.92682 0.86434 0.80295 0.81842 0.78605 1.19894 1.20586 1.18973 1.20885 0.94011 0.89748 1.53528 0.91638 1.18132 0.87043 0.82397 0.76085 1.90585 1.14131 1.86539 1.55594 1.45941 1.08446 1.04994 1.80806 1.20435 0.95130 0.84464 0.93860 0.90800 1.21976 1.00049 0.96165 0.98567 1.21525 0.98673 0.95445 0.99937 1.21457 0.99796 0.98090 0.95660 1.22180 1.00945 0.97820 0.97949 1.22048 0.98438 0.92644 0.89687 0.90055 1.62344 1.13442 1.45985 1.02244 1.22835 0.93097 1.00668 0.94629 1.22678 0.92548 0.93317 0.92704 1.87926 1.29781 1.68146 1.45120 1.22615 0.87382 1.00545 0.90715 1.22784 0.97393 0.94868 0.96198 0.92324 0.78786 0.90906 0.92635 0.92078 0.92317 0.92148 0.92456 0.92162 0.91581 0.94209 0.88518 0.91851 0.88750 0.92235 0.89059 0.90038 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.11 11.85 55.55 0.66 -22.45 16 2 C 0.09 2.50 5.49 -17.37 -0.10 2.41 16 3 Si 0.90 20.36 29.56 -169.99 -5.03 15.33 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.54 -15.38 9.53 -35.63 -0.34 -15.72 16 8 H 0.07 1.72 7.86 -52.48 -0.41 1.31 16 9 C 0.56 15.59 7.71 -12.99 -0.10 15.49 16 10 O -0.59 -18.49 14.71 5.20 0.08 -18.41 16 11 N -0.75 -16.38 4.91 -55.21 -0.27 -16.65 16 12 C 0.17 3.10 1.60 -67.93 -0.11 3.00 16 13 H 0.07 1.58 5.82 -51.93 -0.30 1.28 16 14 C -0.13 -2.20 5.49 -26.73 -0.15 -2.34 16 15 C -0.12 -1.62 5.92 -26.74 -0.16 -1.78 16 16 C -0.11 -1.30 5.92 -26.74 -0.16 -1.46 16 17 C -0.15 -1.86 4.50 -26.76 -0.12 -1.98 16 18 C 0.08 1.17 1.75 -67.73 -0.12 1.05 16 19 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 20 N -0.52 -7.63 4.55 -226.36 -1.03 -8.66 16 21 C 0.02 0.24 4.86 -3.71 -0.02 0.22 16 22 C 0.06 0.94 7.01 37.21 0.26 1.20 16 23 O -0.39 -5.64 10.83 -35.23 -0.38 -6.02 16 24 C 0.06 0.78 7.01 37.21 0.26 1.04 16 25 C 0.02 0.19 5.31 -3.71 -0.02 0.17 16 26 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 27 H 0.38 7.70 8.58 -40.82 -0.35 7.35 16 28 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.69 6.57 -51.93 -0.34 0.34 16 35 H 0.07 0.88 6.43 -51.93 -0.33 0.55 16 36 H 0.04 0.58 6.42 -51.93 -0.33 0.24 16 37 H 0.10 1.78 6.22 -51.93 -0.32 1.46 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.88 8.13 -51.93 -0.42 0.45 16 43 H 0.04 0.48 6.56 -51.93 -0.34 0.14 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -32.96 330.26 -8.80 -41.76 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.94 Total: 8.82 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -0.86 Total: 1.29 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.64 Total: -47.75 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.31 Total: -24.43 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.96 -8.80 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375380547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.512 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds