Wall clock time and date at job start Fri Apr 10 2020 17:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86802 * 119.99400 * 2 1 4 4 H 1.48497 * 109.47345 * 274.98685 * 3 2 1 5 5 H 1.48498 * 109.47185 * 34.98911 * 3 2 1 6 6 H 1.48503 * 109.46757 * 154.98757 * 3 2 1 7 7 C 1.40040 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00162 * 186.14563 * 7 2 1 9 9 C 1.46376 * 120.00290 * 6.14496 * 7 2 1 10 10 O 1.21693 * 119.99665 * 353.94384 * 9 7 2 11 11 N 1.34775 * 120.00103 * 173.93915 * 9 7 2 12 12 C 1.46498 * 119.99874 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.47380 * 34.99414 * 12 11 9 14 14 C 1.53004 * 109.47126 * 275.00036 * 12 11 9 15 15 C 1.52997 * 109.47368 * 180.02562 * 14 12 11 16 16 C 1.52991 * 109.47295 * 59.99538 * 15 14 12 17 17 C 1.52994 * 109.47539 * 300.00196 * 16 15 14 18 18 C 1.53002 * 109.47208 * 155.00140 * 12 11 9 19 19 H 1.08999 * 109.47269 * 59.99849 * 18 12 11 20 20 N 1.46902 * 109.46693 * 299.99493 * 18 12 11 21 21 C 1.47010 * 111.00126 * 298.63586 * 20 18 12 22 22 C 1.53102 * 109.25594 * 177.61262 * 21 20 18 23 23 O 1.43013 * 109.26108 * 56.84486 * 22 21 20 24 24 C 1.43011 * 113.73964 * 301.33408 * 23 22 21 25 25 C 1.47016 * 110.99446 * 175.00140 * 20 18 12 26 26 H 0.96995 * 120.00580 * 359.97438 * 1 2 3 27 27 H 0.96997 * 120.00193 * 359.97438 * 11 9 7 28 28 H 1.09001 * 109.46960 * 59.99655 * 14 12 11 29 29 H 1.08999 * 109.46994 * 300.00499 * 14 12 11 30 30 H 1.09009 * 109.46751 * 299.99792 * 15 14 12 31 31 H 1.09000 * 109.46922 * 180.02562 * 15 14 12 32 32 H 1.08999 * 109.47020 * 60.00410 * 16 15 14 33 33 H 1.09004 * 109.47170 * 179.97438 * 16 15 14 34 34 H 1.08998 * 109.47805 * 179.97438 * 17 16 15 35 35 H 1.08999 * 109.47139 * 300.00140 * 17 16 15 36 36 H 1.08999 * 109.50637 * 297.54196 * 21 20 18 37 37 H 1.08998 * 109.50958 * 57.67697 * 21 20 18 38 38 H 1.09004 * 109.50426 * 296.91401 * 22 21 20 39 39 H 1.08999 * 109.54421 * 176.80822 * 22 21 20 40 40 H 1.09002 * 109.50603 * 298.72945 * 24 23 22 41 41 H 1.09001 * 109.54364 * 178.62853 * 24 23 22 42 42 H 1.08997 * 109.50671 * 302.32776 * 25 20 18 43 43 H 1.08994 * 109.50944 * 62.46233 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 2.3827 2.1074 -1.3947 5 1 1.4947 2.6200 0.8028 6 1 3.5869 1.4122 0.5920 7 6 2.0071 -1.2127 -0.0005 8 1 3.0824 -1.2154 0.0996 9 6 1.2816 -2.4768 -0.1368 10 8 0.0647 -2.4827 -0.1387 11 7 1.9614 -3.6340 -0.2602 12 6 1.2353 -4.8990 -0.3971 13 1 0.3249 -4.7348 -0.9735 14 6 0.8714 -5.4309 0.9905 15 6 0.1136 -6.7524 0.8476 16 6 0.9976 -7.7717 0.1264 17 6 1.3615 -7.2399 -1.2612 18 6 2.1189 -5.9187 -1.1186 19 1 3.0293 -6.0829 -0.5421 20 7 2.4682 -5.4079 -2.4509 21 6 1.2642 -5.2049 -3.2697 22 6 1.6681 -4.6175 -4.6246 23 8 2.6107 -5.4892 -5.2546 24 6 3.7958 -5.7087 -4.4848 25 6 3.4135 -6.3072 -3.1285 26 1 -0.4851 0.8400 0.0004 27 1 2.9314 -3.6292 -0.2591 28 1 0.2419 -4.7044 1.5045 29 1 1.7818 -5.5950 1.5670 30 1 -0.7968 -6.5885 0.2710 31 1 -0.1460 -7.1310 1.8362 32 1 1.9079 -7.9355 0.7029 33 1 0.4579 -8.7133 0.0250 34 1 1.9916 -7.9659 -1.7750 35 1 0.4511 -7.0761 -1.8378 36 1 0.7625 -6.1604 -3.4223 37 1 0.5899 -4.5161 -2.7608 38 1 2.1217 -3.6376 -4.4758 39 1 0.7856 -4.5178 -5.2565 40 1 4.3113 -4.7605 -4.3320 41 1 4.4525 -6.3985 -5.0150 42 1 4.3080 -6.4230 -2.5166 43 1 2.9461 -7.2803 -3.2789 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375380547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:53 Heat of formation + Delta-G solvation = -114.719915 kcal Electronic energy + Delta-G solvation = -23934.500751 eV Core-core repulsion = 20591.858913 eV Total energy + Delta-G solvation = -3342.641838 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36826 -39.61957 -38.39704 -35.92308 -34.83644 -34.12706 -32.15323 -30.99240 -30.29293 -28.09573 -26.91378 -25.12834 -23.84304 -22.91421 -21.55957 -21.27882 -20.36070 -19.02171 -17.75609 -17.34555 -17.16445 -16.61970 -16.08337 -16.01246 -15.91487 -15.49603 -15.39958 -15.02625 -14.95198 -14.43902 -14.11257 -13.98506 -13.73753 -13.26114 -13.08352 -13.00115 -12.80104 -12.57228 -12.54290 -12.52502 -12.06958 -11.99011 -11.90090 -11.80528 -11.55247 -11.37957 -11.08747 -10.90232 -10.64190 -9.76031 -9.27492 -9.17451 -8.25160 -6.78471 1.39183 1.40493 1.55611 2.25829 2.53288 2.73247 2.94416 3.19479 3.64167 3.69326 3.88324 3.95041 4.06184 4.07742 4.12184 4.19615 4.25927 4.31690 4.39832 4.43544 4.46050 4.59714 4.64246 4.72931 4.79618 4.81322 4.89427 4.95842 5.03664 5.14692 5.15755 5.16729 5.23387 5.35505 5.37548 5.47416 5.96242 5.98266 6.10773 6.18294 6.32409 6.45849 6.92223 7.68550 8.57636 8.75607 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014867 B = 0.006115 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.880673 B = 4577.932818 C = 5868.825681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.031 3.969 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.547 3.453 10 O -0.634 6.634 11 N -0.736 5.736 12 C 0.168 3.832 13 H 0.035 0.965 14 C -0.123 4.123 15 C -0.113 4.113 16 C -0.104 4.104 17 C -0.143 4.143 18 C 0.091 3.909 19 H 0.099 0.901 20 N -0.536 5.536 21 C 0.024 3.976 22 C 0.070 3.930 23 O -0.398 6.398 24 C 0.059 3.941 25 C 0.019 3.981 26 H 0.272 0.728 27 H 0.391 0.609 28 H 0.023 0.977 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.106 0.894 40 H 0.051 0.949 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.418 -15.354 -4.752 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.183 4.183 3 Si 0.812 3.188 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.173 1.173 7 C -0.611 4.611 8 H 0.099 0.901 9 C 0.350 3.650 10 O -0.522 6.522 11 N -0.387 5.387 12 C 0.062 3.938 13 H 0.053 0.947 14 C -0.162 4.162 15 C -0.151 4.151 16 C -0.142 4.142 17 C -0.182 4.182 18 C -0.017 4.017 19 H 0.117 0.883 20 N -0.260 5.260 21 C -0.104 4.104 22 C -0.008 4.008 23 O -0.317 6.317 24 C -0.018 4.018 25 C -0.108 4.108 26 H 0.082 0.918 27 H 0.224 0.776 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.124 0.876 40 H 0.069 0.931 41 H 0.141 0.859 42 H 0.121 0.879 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.598 -14.898 -4.894 17.425 hybrid contribution -0.237 0.585 0.320 0.708 sum 7.361 -14.312 -4.574 16.732 Atomic orbital electron populations 1.70198 1.09409 1.28593 1.37131 1.26882 0.95422 1.04695 0.91339 0.85098 0.79016 0.75663 0.79059 1.18971 1.19800 1.17265 1.21406 0.94932 0.90672 1.54108 0.90080 1.18425 0.86621 0.84172 0.75761 1.90541 1.16226 1.87629 1.57766 1.45610 1.08807 1.05065 1.79212 1.20573 0.94369 0.84081 0.94810 0.94681 1.21876 1.00250 0.96902 0.97214 1.21495 0.98163 0.94202 1.01231 1.21432 1.00196 0.97866 0.94692 1.22133 1.00465 0.96841 0.98772 1.21919 0.98332 0.92100 0.89397 0.88335 1.62296 1.13482 1.47701 1.02475 1.22631 0.93047 1.00097 0.94625 1.22577 0.93111 0.92428 0.92641 1.87920 1.30400 1.67752 1.45642 1.22861 0.86797 1.01034 0.91089 1.22871 0.97321 0.94506 0.96151 0.91841 0.77607 0.95762 0.91019 0.93601 0.90571 0.90362 0.90066 0.89610 0.92956 0.93145 0.92727 0.93871 0.87617 0.93069 0.85871 0.87903 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.48 11.85 21.83 0.26 -51.22 16 2 C 0.03 1.78 5.49 85.30 0.47 2.25 16 3 Si 0.99 42.15 29.56 68.60 2.03 44.18 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.57 -33.31 9.53 24.83 0.24 -33.07 16 8 H 0.08 4.28 7.86 -2.91 -0.02 4.26 16 9 C 0.55 32.05 7.71 86.36 0.67 32.72 16 10 O -0.63 -42.88 14.71 -4.33 -0.06 -42.95 16 11 N -0.74 -33.34 4.91 -446.81 -2.19 -35.54 16 12 C 0.17 6.41 1.60 44.99 0.07 6.49 16 13 H 0.04 1.63 5.82 -2.39 -0.01 1.62 16 14 C -0.12 -4.33 5.49 30.59 0.17 -4.16 16 15 C -0.11 -3.02 5.92 30.59 0.18 -2.84 16 16 C -0.10 -2.08 5.92 30.59 0.18 -1.90 16 17 C -0.14 -3.18 4.50 30.58 0.14 -3.04 16 18 C 0.09 2.52 1.75 44.90 0.08 2.60 16 19 H 0.10 2.43 8.12 -2.39 -0.02 2.41 16 20 N -0.54 -15.28 4.55 -870.06 -3.96 -19.24 16 21 C 0.02 0.76 4.86 86.32 0.42 1.18 16 22 C 0.07 2.05 7.01 72.02 0.50 2.56 16 23 O -0.40 -10.90 10.83 -148.98 -1.61 -12.52 16 24 C 0.06 1.27 7.01 72.02 0.50 1.77 16 25 C 0.02 0.40 5.31 86.31 0.46 0.86 16 26 H 0.27 15.43 8.29 -92.71 -0.77 14.66 16 27 H 0.39 15.94 8.58 -92.71 -0.80 15.15 16 28 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.05 1.35 8.14 -2.38 -0.02 1.34 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.55 6.57 -2.39 -0.02 1.54 16 35 H 0.05 1.33 6.43 -2.39 -0.02 1.31 16 36 H 0.05 1.45 6.42 -2.39 -0.02 1.44 16 37 H 0.05 2.18 6.22 -2.39 -0.01 2.17 16 38 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.10 1.77 8.13 -2.39 -0.02 1.75 16 43 H 0.05 1.00 6.56 -2.39 -0.02 0.99 16 Total: -1.00 -76.80 330.26 -1.25 -78.05 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 0.21 Total: 33.81 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 4.08 Total: 5.41 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -5.89 Total: -105.99 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -1.68 Total: -55.46 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -76.80 -1.25 -78.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375380547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.667 kcal (2) G-P(sol) polarization free energy of solvation -76.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds