Wall clock time and date at job start Fri Apr 10 2020 17:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00271 * 2 1 4 4 H 1.48501 * 109.47145 * 240.00187 * 3 2 1 5 5 H 1.48502 * 109.46832 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47518 * 119.99618 * 3 2 1 7 7 C 1.37878 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00236 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.47528 * 179.97438 * 9 7 2 11 11 C 1.42898 * 114.00162 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46963 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47059 * 64.99743 * 12 11 10 14 14 C 1.46910 * 110.99862 * 293.95231 * 13 12 11 15 15 C 1.53021 * 109.23268 * 186.53131 * 14 13 12 16 16 C 1.52714 * 109.64312 * 301.07554 * 15 14 13 17 17 H 1.09001 * 107.79934 * 174.46289 * 16 15 14 18 18 N 1.45481 * 110.69122 * 293.13035 * 16 15 14 19 19 C 1.33469 * 123.90146 * 141.96490 * 18 16 15 20 20 O 1.21288 * 118.28284 * 177.70186 * 19 18 16 21 21 C 1.50170 * 123.43656 * 357.72570 * 19 18 16 22 22 C 1.53067 * 110.02638 * 17.53245 * 21 19 18 23 23 C 1.52781 * 110.18725 * 56.07207 * 16 15 14 24 24 H 1.09002 * 109.74319 * 66.25230 * 23 16 15 25 25 C 1.46955 * 110.87764 * 58.92546 * 13 12 11 26 26 H 0.97001 * 120.00155 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47376 * 59.99176 * 9 7 2 28 28 H 1.09002 * 109.46869 * 299.99750 * 9 7 2 29 29 H 1.08999 * 109.47595 * 59.99626 * 11 10 9 30 30 H 1.08998 * 109.46833 * 299.99494 * 11 10 9 31 31 H 1.08992 * 109.47058 * 304.99643 * 12 11 10 32 32 H 1.09004 * 109.46521 * 184.99538 * 12 11 10 33 33 H 1.09000 * 109.51258 * 66.60824 * 14 13 12 34 34 H 1.09002 * 109.55487 * 306.48720 * 14 13 12 35 35 H 1.08997 * 109.44440 * 181.02118 * 15 14 13 36 36 H 1.08999 * 109.41520 * 61.10963 * 15 14 13 37 37 H 0.97002 * 118.04609 * 321.99422 * 18 16 15 38 38 H 1.09003 * 109.37935 * 257.36371 * 21 19 18 39 39 H 1.09001 * 109.37999 * 137.70155 * 21 19 18 40 40 H 1.08992 * 109.68908 * 191.37974 * 22 21 19 41 41 H 1.09000 * 109.71448 * 70.82975 * 22 21 19 42 42 H 1.08997 * 110.31827 * 54.23889 * 25 13 12 43 43 H 1.08997 * 108.60150 * 294.38976 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 7 3.4082 -5.8884 1.2546 14 6 4.1668 -4.6335 1.3434 15 6 5.0662 -4.6747 2.5807 16 6 4.2109 -4.8687 3.8309 17 1 4.8841 -4.9931 4.6791 18 7 3.3753 -3.7017 4.0682 19 6 2.1203 -3.7638 4.5183 20 8 1.5301 -2.7237 4.7203 21 6 1.4010 -5.0541 4.7884 22 6 2.4074 -6.2021 4.8990 23 6 3.3580 -6.1291 3.6958 24 1 4.0012 -7.0090 3.6808 25 6 2.5239 -6.0763 2.4132 26 1 -0.4850 0.8400 -0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 0.9451 -4.9823 -0.8902 30 1 0.9447 -4.9827 0.8897 31 1 3.3214 -5.7953 -0.8424 32 1 2.1819 -6.9375 -0.0906 33 1 3.4752 -3.7949 1.4239 34 1 4.7809 -4.5144 0.4507 35 1 5.6174 -3.7377 2.6600 36 1 5.7694 -5.5027 2.4901 37 1 3.7525 -2.8264 3.8881 38 1 0.7071 -5.2588 3.9731 39 1 0.8447 -4.9696 5.7219 40 1 1.8792 -7.1554 4.8924 41 1 2.9767 -6.1042 5.8233 42 1 1.9576 -7.0019 2.3109 43 1 1.8339 -5.2341 2.4641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385836231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:25:56 Heat of formation + Delta-G solvation = -85.184382 kcal Electronic energy + Delta-G solvation = -24302.899238 eV Core-core repulsion = 20961.538156 eV Total energy + Delta-G solvation = -3341.361082 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86931 -38.42431 -36.85631 -35.06780 -33.85835 -32.68364 -31.45406 -29.25969 -28.50185 -26.80250 -24.93948 -24.00273 -22.48059 -22.13388 -21.48330 -20.22237 -18.17443 -16.71491 -16.42071 -15.99329 -15.81603 -15.64845 -15.58280 -15.19257 -14.40834 -14.27435 -13.95211 -13.74677 -13.60035 -13.14279 -13.08884 -12.75538 -12.60218 -12.08732 -11.88994 -11.62633 -11.34404 -11.14677 -11.03074 -10.93973 -10.82372 -10.71396 -10.60138 -10.41975 -10.36407 -10.09228 -9.45459 -9.12550 -8.83208 -8.78690 -8.20967 -7.78758 -6.08247 -4.10486 2.95449 3.33549 3.36690 3.39495 3.51961 4.09120 4.36353 4.50448 4.55689 4.70508 4.77465 4.84669 5.15698 5.17915 5.28782 5.29033 5.39902 5.45513 5.54909 5.57211 5.60814 5.70656 5.74096 5.84835 5.91008 5.93539 5.96685 6.03090 6.07040 6.14210 6.29353 6.36816 6.80774 7.06885 7.09642 7.31243 7.36236 7.43153 7.62961 7.78323 8.15335 8.53253 8.53437 8.99677 9.54228 11.03405 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016684 B = 0.006248 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.884802 B = 4480.296720 C = 5086.720623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.196 3.804 10 O -0.387 6.387 11 C 0.022 3.978 12 C 0.060 3.940 13 N -0.535 5.535 14 C 0.044 3.956 15 C -0.128 4.128 16 C 0.147 3.853 17 H 0.066 0.934 18 N -0.710 5.710 19 C 0.518 3.482 20 O -0.550 6.550 21 C -0.138 4.138 22 C -0.117 4.117 23 C -0.092 4.092 24 H 0.095 0.905 25 C 0.051 3.949 26 H 0.264 0.736 27 H 0.002 0.998 28 H 0.002 0.998 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.401 0.599 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -16.145 7.686 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.122 3.878 10 O -0.307 6.307 11 C -0.057 4.057 12 C -0.068 4.068 13 N -0.258 5.258 14 C -0.083 4.083 15 C -0.166 4.166 16 C 0.042 3.958 17 H 0.083 0.917 18 N -0.363 5.363 19 C 0.305 3.695 20 O -0.427 6.427 21 C -0.178 4.178 22 C -0.155 4.155 23 C -0.111 4.111 24 H 0.113 0.887 25 C -0.077 4.077 26 H 0.074 0.926 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.237 0.763 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.663 -16.048 7.843 19.436 hybrid contribution -0.455 1.794 -0.222 1.864 sum 7.209 -14.253 7.621 17.697 Atomic orbital electron populations 1.69943 1.06134 1.27259 1.50126 1.24929 0.94941 0.99393 0.95019 0.86425 0.79385 0.82127 0.78719 1.20081 1.21129 1.19975 1.20916 0.93722 0.89274 1.51324 0.91810 1.20172 0.88807 0.83689 0.95138 1.87897 1.35122 1.12892 1.94755 1.23028 0.96313 0.86971 0.99363 1.22232 0.95039 0.96768 0.92762 1.62011 1.26237 1.36154 1.01421 1.22366 0.97018 0.92090 0.96822 1.21912 0.97979 1.02495 0.94243 1.20703 0.91748 0.85524 0.97861 0.91657 1.45497 1.13905 1.10153 1.66720 1.20065 0.81520 0.91447 0.76489 1.90810 1.64441 1.35197 1.52267 1.21690 0.99021 0.92416 1.04689 1.21730 0.97156 0.98480 0.98179 1.21460 0.97257 0.97822 0.94591 0.88667 1.22233 0.94616 1.01096 0.89742 0.92599 0.98021 0.98010 0.94294 0.94656 0.90112 0.90230 0.89465 0.90989 0.91043 0.90298 0.76261 0.88275 0.88548 0.90486 0.91031 0.90820 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 22.50 29.54 -169.99 -5.02 17.48 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -15.27 9.43 -34.44 -0.32 -15.59 16 8 H 0.06 1.86 7.81 -52.48 -0.41 1.44 16 9 C 0.20 5.45 5.69 36.00 0.20 5.65 16 10 O -0.39 -8.94 7.01 -35.23 -0.25 -9.18 16 11 C 0.02 0.41 5.73 37.16 0.21 0.62 16 12 C 0.06 0.86 5.92 -3.82 -0.02 0.84 16 13 N -0.53 -7.37 4.82 -234.50 -1.13 -8.50 16 14 C 0.04 0.68 4.52 -3.81 -0.02 0.66 16 15 C -0.13 -1.51 5.70 -26.87 -0.15 -1.66 16 16 C 0.15 1.67 3.00 -68.74 -0.21 1.46 16 17 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 18 N -0.71 -10.47 4.72 -55.21 -0.26 -10.73 16 19 C 0.52 8.78 6.94 -11.82 -0.08 8.70 16 20 O -0.55 -12.33 17.79 5.55 0.10 -12.23 16 21 C -0.14 -1.72 5.38 -28.10 -0.15 -1.87 16 22 C -0.12 -1.06 5.65 -26.43 -0.15 -1.21 16 23 C -0.09 -0.94 2.76 -90.42 -0.25 -1.19 16 24 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 25 C 0.05 0.64 3.68 -3.75 -0.01 0.63 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 28 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.65 6.23 -51.93 -0.32 0.33 16 31 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.72 5.37 -51.93 -0.28 1.44 16 34 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.40 6.32 8.68 -40.82 -0.35 5.97 16 38 H 0.10 1.27 6.80 -51.93 -0.35 0.92 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.71 3.85 -51.93 -0.20 0.51 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -34.53 329.21 -8.88 -43.40 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.96 Total: 3.13 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.05 Total: -1.33 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.65 Total: -46.22 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.15 Total: -21.42 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.53 -8.88 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385836231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.783 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds