Wall clock time and date at job start Fri Apr 10 2020 17:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34776 * 120.59877 * 124.62257 * 12 11 10 14 14 O 1.21279 * 120.00093 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99763 * 0.02562 * 13 12 11 16 16 O 1.42899 * 109.46962 * 180.02562 * 15 13 12 17 17 C 1.42900 * 113.99561 * 180.02562 * 16 15 13 18 18 C 1.54264 * 110.03099 * 267.90272 * 17 16 15 19 19 C 1.54961 * 104.16494 * 217.14022 * 18 17 16 20 20 C 1.54892 * 102.77457 * 37.88642 * 19 18 17 21 21 C 1.53878 * 110.03289 * 150.69122 * 17 16 15 22 22 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 23 23 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 24 24 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 26 26 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 27 27 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 28 28 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 29 29 H 1.09001 * 109.47137 * 300.00288 * 15 13 12 30 30 H 1.09007 * 109.47022 * 59.99996 * 15 13 12 31 31 H 1.08997 * 110.01955 * 29.29651 * 17 16 15 32 32 H 1.09004 * 110.48731 * 335.78758 * 18 17 16 33 33 H 1.09007 * 110.48353 * 98.43124 * 18 17 16 34 34 H 1.09008 * 110.71882 * 279.57926 * 19 18 17 35 35 H 1.08994 * 110.92883 * 156.29867 * 19 18 17 36 36 H 1.09001 * 110.48670 * 203.40549 * 20 19 18 37 37 H 1.08999 * 110.59812 * 80.82354 * 20 19 18 38 38 H 1.08997 * 110.03028 * 238.56769 * 21 17 16 39 39 H 1.08998 * 110.03104 * 359.97438 * 21 17 16 40 40 H 1.08996 * 109.61476 * 295.47839 * 22 12 11 41 41 H 1.09010 * 109.75120 * 175.04934 * 22 12 11 42 42 H 1.09003 * 109.61422 * 354.94072 * 23 9 7 43 43 H 1.08999 * 109.61487 * 115.28316 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3436 -5.7196 2.2436 14 8 -0.5938 -5.6867 3.0123 15 6 0.8047 -7.0362 1.6734 16 8 -0.0145 -8.0896 2.1845 17 6 0.3410 -9.3876 1.7038 18 6 -0.4749 -9.7242 0.4386 19 6 -0.7758 -11.2383 0.5731 20 6 -1.0353 -11.4024 2.0913 21 6 -0.0148 -10.4543 2.7542 22 6 0.5344 -3.2876 2.4474 23 6 0.2343 -2.3368 1.2819 24 1 -0.4850 0.8401 -0.0004 25 1 1.0134 -4.0707 -0.8208 26 1 2.7052 -3.5085 -0.8012 27 1 3.0125 -4.2759 1.4845 28 1 2.2517 -5.6159 0.5906 29 1 0.7252 -7.0092 0.5866 30 1 1.8423 -7.2118 1.9575 31 1 1.4073 -9.4239 1.4811 32 1 -1.4021 -9.1514 0.4190 33 1 0.1139 -9.5296 -0.4580 34 1 0.0841 -11.8316 0.2619 35 1 -1.6604 -11.5121 -0.0018 36 1 -0.8557 -12.4322 2.4000 37 1 -2.0530 -11.1023 2.3410 38 1 0.8788 -11.0089 3.0406 39 1 -0.4581 -9.9819 3.6307 40 1 1.3246 -2.8665 3.0689 41 1 -0.3658 -3.4283 3.0458 42 1 0.0946 -1.3248 1.6621 43 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408216355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:16 Heat of formation + Delta-G solvation = -59.504505 kcal Electronic energy + Delta-G solvation = -22706.604038 eV Core-core repulsion = 19366.356520 eV Total energy + Delta-G solvation = -3340.247519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.80371 -38.79437 -36.83017 -35.76129 -33.91594 -31.21333 -30.69179 -29.00437 -28.64986 -27.32096 -26.22656 -23.62903 -22.72787 -20.97154 -20.64507 -20.49061 -18.70704 -17.34803 -16.97015 -16.29576 -15.82382 -15.55832 -15.36834 -14.79162 -14.54370 -14.14000 -13.71401 -13.54435 -13.52057 -13.32100 -13.23222 -12.60665 -12.27676 -12.02651 -11.78229 -11.58919 -11.34580 -11.29866 -11.24194 -10.84252 -10.83638 -10.76551 -10.71035 -10.60836 -10.26896 -9.98384 -9.87732 -9.64165 -9.27807 -8.60680 -8.25620 -6.73829 -5.86588 -3.32513 2.94955 3.03004 3.33936 3.40587 3.41156 3.95020 4.35549 4.37931 4.42589 4.70107 4.82612 4.99970 5.10338 5.17942 5.23886 5.24244 5.30417 5.32225 5.43455 5.47947 5.65490 5.67274 5.69626 5.72339 5.79557 5.83697 5.92120 6.00477 6.11286 6.11984 6.31379 6.36141 6.47542 6.65774 6.82278 7.12876 7.25576 7.53782 7.70176 7.87702 8.34292 8.57310 9.09835 9.72536 10.29322 11.20801 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043240 B = 0.003196 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.395671 B = 8757.695906 C = 8942.535529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.088 3.912 12 N -0.597 5.597 13 C 0.509 3.491 14 O -0.535 6.535 15 C 0.047 3.953 16 O -0.355 6.355 17 C 0.081 3.919 18 C -0.150 4.150 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.124 4.124 22 C 0.089 3.911 23 C 0.158 3.842 24 H 0.257 0.743 25 H 0.024 0.976 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 -19.615 1.660 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.037 4.037 12 N -0.331 5.331 13 C 0.296 3.704 14 O -0.412 6.412 15 C -0.033 4.033 16 O -0.273 6.273 17 C 0.023 3.977 18 C -0.188 4.188 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.161 4.161 22 C -0.034 4.034 23 C 0.032 3.968 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.118 0.882 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.297 -19.389 2.189 19.647 hybrid contribution 0.750 0.887 -0.377 1.222 sum 3.048 -18.502 1.812 18.838 Atomic orbital electron populations 1.70015 1.05339 1.25936 1.53106 1.25100 0.95299 0.98619 1.00456 0.86329 0.78896 0.83102 0.78163 1.20829 1.21571 1.20911 1.19144 0.92702 0.84663 1.42429 0.91483 1.44008 1.36566 1.01579 1.49234 1.21360 0.98464 0.87486 0.92381 1.22488 0.88563 1.00117 0.92549 1.48014 1.32738 1.06701 1.45674 1.20131 0.83315 0.84913 0.82040 1.90673 1.28220 1.86581 1.35763 1.22287 0.94860 0.87374 0.98786 1.88092 1.56063 1.13877 1.69279 1.22868 0.97874 0.83215 0.93702 1.22949 1.01465 0.96789 0.97577 1.22436 1.01448 0.95721 0.96429 1.22334 0.99577 0.98987 0.95168 1.22216 0.99594 0.95473 0.98836 1.22504 0.99931 0.82491 0.98477 1.21202 0.89010 0.98611 0.87994 0.93340 0.95836 0.91402 0.91342 0.91267 0.90514 0.90724 0.91851 0.90160 0.91425 0.91496 0.91339 0.91580 0.91264 0.91074 0.90088 0.92088 0.90064 0.88193 0.95804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 11.20 55.49 0.62 -25.06 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 3 Si 0.91 21.11 29.59 -169.99 -5.03 16.08 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.86 9.57 -15.06 -0.14 -7.00 16 8 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.32 2.96 -171.77 -0.51 -14.82 16 10 C 0.13 2.53 6.70 -3.37 -0.02 2.51 16 11 C 0.09 1.39 6.52 -3.37 -0.02 1.36 16 12 N -0.60 -10.96 2.95 -172.21 -0.51 -11.47 16 13 C 0.51 9.36 7.77 -10.98 -0.09 9.27 16 14 O -0.54 -11.92 15.91 -14.35 -0.23 -12.15 16 15 C 0.05 0.65 4.60 36.01 0.17 0.81 16 16 O -0.35 -5.26 9.43 -55.14 -0.52 -5.78 16 17 C 0.08 0.87 3.38 -25.61 -0.09 0.79 16 18 C -0.15 -1.46 6.56 -25.03 -0.16 -1.62 16 19 C -0.12 -0.97 6.91 -24.70 -0.17 -1.14 16 20 C -0.12 -1.01 6.83 -25.07 -0.17 -1.18 16 21 C -0.12 -1.17 6.61 -25.61 -0.17 -1.34 16 22 C 0.09 1.82 6.59 -3.60 -0.02 1.80 16 23 C 0.16 3.78 5.51 -3.59 -0.02 3.76 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.07 0.83 5.91 -51.93 -0.31 0.53 16 29 H 0.08 0.93 7.72 -51.93 -0.40 0.53 16 30 H 0.07 0.84 7.87 -51.92 -0.41 0.43 16 31 H 0.06 0.57 7.81 -51.93 -0.41 0.17 16 32 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.08 1.68 7.00 -51.92 -0.36 1.32 16 42 H 0.10 2.63 6.00 -51.93 -0.31 2.32 16 43 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -32.02 339.72 -9.27 -41.29 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.22 Total: -1.25 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -1.00 Total: 8.05 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.39 Total: -51.35 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.75 Total: -17.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.02 -9.27 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408216355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.216 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds