Wall clock time and date at job start Fri Apr 10 2020 17:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34776 * 120.59877 * 124.62257 * 12 11 10 14 14 O 1.21279 * 120.00093 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99763 * 0.02562 * 13 12 11 16 16 O 1.42899 * 109.46962 * 180.02562 * 15 13 12 17 17 C 1.42900 * 113.99561 * 180.02562 * 16 15 13 18 18 C 1.54264 * 110.03099 * 267.90272 * 17 16 15 19 19 C 1.54961 * 104.16494 * 217.14022 * 18 17 16 20 20 C 1.54892 * 102.77457 * 37.88642 * 19 18 17 21 21 C 1.53878 * 110.03289 * 150.69122 * 17 16 15 22 22 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 23 23 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 24 24 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 26 26 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 27 27 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 28 28 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 29 29 H 1.09001 * 109.47137 * 300.00288 * 15 13 12 30 30 H 1.09007 * 109.47022 * 59.99996 * 15 13 12 31 31 H 1.08997 * 110.01955 * 29.29651 * 17 16 15 32 32 H 1.09004 * 110.48731 * 335.78758 * 18 17 16 33 33 H 1.09007 * 110.48353 * 98.43124 * 18 17 16 34 34 H 1.09008 * 110.71882 * 279.57926 * 19 18 17 35 35 H 1.08994 * 110.92883 * 156.29867 * 19 18 17 36 36 H 1.09001 * 110.48670 * 203.40549 * 20 19 18 37 37 H 1.08999 * 110.59812 * 80.82354 * 20 19 18 38 38 H 1.08997 * 110.03028 * 238.56769 * 21 17 16 39 39 H 1.08998 * 110.03104 * 359.97438 * 21 17 16 40 40 H 1.08996 * 109.61476 * 295.47839 * 22 12 11 41 41 H 1.09010 * 109.75120 * 175.04934 * 22 12 11 42 42 H 1.09003 * 109.61422 * 354.94072 * 23 9 7 43 43 H 1.08999 * 109.61487 * 115.28316 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3436 -5.7196 2.2436 14 8 -0.5938 -5.6867 3.0123 15 6 0.8047 -7.0362 1.6734 16 8 -0.0145 -8.0896 2.1845 17 6 0.3410 -9.3876 1.7038 18 6 -0.4749 -9.7242 0.4386 19 6 -0.7758 -11.2383 0.5731 20 6 -1.0353 -11.4024 2.0913 21 6 -0.0148 -10.4543 2.7542 22 6 0.5344 -3.2876 2.4474 23 6 0.2343 -2.3368 1.2819 24 1 -0.4850 0.8401 -0.0004 25 1 1.0134 -4.0707 -0.8208 26 1 2.7052 -3.5085 -0.8012 27 1 3.0125 -4.2759 1.4845 28 1 2.2517 -5.6159 0.5906 29 1 0.7252 -7.0092 0.5866 30 1 1.8423 -7.2118 1.9575 31 1 1.4073 -9.4239 1.4811 32 1 -1.4021 -9.1514 0.4190 33 1 0.1139 -9.5296 -0.4580 34 1 0.0841 -11.8316 0.2619 35 1 -1.6604 -11.5121 -0.0018 36 1 -0.8557 -12.4322 2.4000 37 1 -2.0530 -11.1023 2.3410 38 1 0.8788 -11.0089 3.0406 39 1 -0.4581 -9.9819 3.6307 40 1 1.3246 -2.8665 3.0689 41 1 -0.3658 -3.4283 3.0458 42 1 0.0946 -1.3248 1.6621 43 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408216355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:16 Heat of formation + Delta-G solvation = -78.795810 kcal Electronic energy + Delta-G solvation = -22707.440572 eV Core-core repulsion = 19366.356520 eV Total energy + Delta-G solvation = -3341.084052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.16863 -39.76700 -38.41854 -36.70895 -35.67174 -33.09305 -32.28658 -29.93633 -29.55876 -28.63689 -27.55747 -25.38941 -24.34616 -22.28798 -21.62039 -21.28142 -20.26159 -18.79558 -18.15261 -17.78597 -17.01292 -16.83810 -16.68750 -16.26864 -15.61411 -15.49832 -15.39401 -15.12675 -14.96384 -14.65739 -14.23594 -13.93722 -13.51974 -13.38556 -13.13611 -12.86674 -12.62297 -12.51487 -12.41520 -12.31966 -12.02777 -12.00719 -11.92458 -11.87599 -11.70221 -11.49255 -11.47115 -10.75655 -10.60562 -10.53814 -9.86153 -8.67575 -7.88937 -5.38144 1.48384 1.51182 1.55382 1.57982 1.76368 2.50687 2.87068 3.26217 3.52981 3.58645 3.69284 3.72216 4.05039 4.10711 4.22346 4.24272 4.29110 4.35061 4.38668 4.51542 4.55319 4.59141 4.65019 4.75562 4.78069 4.80658 4.84533 4.97673 5.04346 5.05404 5.15282 5.23141 5.23905 5.30593 5.43132 5.47328 5.59612 5.65904 6.22213 6.34701 6.49071 7.08313 7.14677 7.78378 8.31794 9.16402 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043240 B = 0.003196 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.395671 B = 8757.695906 C = 8942.535529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.052 4.052 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.264 4.264 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.124 3.876 11 C 0.096 3.904 12 N -0.600 5.600 13 C 0.503 3.497 14 O -0.584 6.584 15 C 0.054 3.946 16 O -0.389 6.389 17 C 0.074 3.926 18 C -0.152 4.152 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.126 4.126 22 C 0.103 3.897 23 C 0.171 3.829 24 H 0.250 0.750 25 H 0.016 0.984 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.069 0.931 43 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.851 -21.895 0.968 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.226 1.226 6 H -0.202 1.202 7 C -0.393 4.393 8 H 0.096 0.904 9 N -0.333 5.333 10 C -0.002 4.002 11 C -0.027 4.027 12 N -0.334 5.334 13 C 0.292 3.708 14 O -0.465 6.465 15 C -0.025 4.025 16 O -0.309 6.309 17 C 0.017 3.983 18 C -0.190 4.190 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.021 4.021 23 C 0.044 3.956 24 H 0.059 0.941 25 H 0.034 0.966 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.137 0.863 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 5.132 -21.715 1.474 22.361 hybrid contribution -0.136 1.523 -0.189 1.541 sum 4.996 -20.191 1.285 20.840 Atomic orbital electron populations 1.70185 1.06950 1.26103 1.55166 1.25890 0.95951 1.01879 1.01035 0.85295 0.77457 0.78907 0.78491 1.19787 1.22560 1.20241 1.19558 0.93267 0.85588 1.40925 0.90409 1.44271 1.36261 1.02990 1.49784 1.21605 0.98694 0.85940 0.93998 1.22562 0.87656 1.01909 0.90551 1.48102 1.33409 1.05893 1.45968 1.21074 0.82258 0.86349 0.81138 1.90649 1.30375 1.87401 1.38037 1.22321 0.96185 0.84524 0.99470 1.88070 1.57145 1.15494 1.70156 1.23179 0.99497 0.81525 0.94142 1.22958 1.00407 0.97744 0.97885 1.22442 1.02435 0.94609 0.96013 1.22352 0.98492 0.99716 0.95573 1.22274 1.00671 0.95539 0.97827 1.22088 0.99883 0.83330 0.96823 1.20863 0.88192 0.97708 0.88855 0.94072 0.96578 0.89736 0.90085 0.86254 0.88254 0.86938 0.89214 0.92767 0.89961 0.89577 0.90987 0.89716 0.92741 0.88915 0.92455 0.91320 0.91134 0.91241 0.99150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.36 11.20 21.65 0.24 -55.12 16 2 C -0.05 -2.85 4.91 84.86 0.42 -2.43 16 3 Si 0.97 43.71 29.59 68.60 2.03 45.74 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.26 -13.80 9.57 84.03 0.80 -13.00 16 8 H 0.08 3.84 7.89 -2.91 -0.02 3.82 16 9 N -0.61 -29.45 2.96 -697.35 -2.06 -31.52 16 10 C 0.12 4.54 6.70 86.56 0.58 5.12 16 11 C 0.10 2.70 6.52 86.56 0.56 3.27 16 12 N -0.60 -21.15 2.95 -817.15 -2.41 -23.56 16 13 C 0.50 17.82 7.77 87.66 0.68 18.51 16 14 O -0.58 -26.40 15.91 16.01 0.25 -26.15 16 15 C 0.05 1.32 4.60 71.24 0.33 1.64 16 16 O -0.39 -10.89 9.43 -129.94 -1.23 -12.12 16 17 C 0.07 1.38 3.38 31.32 0.11 1.49 16 18 C -0.15 -2.62 6.56 31.69 0.21 -2.41 16 19 C -0.12 -1.55 6.91 31.91 0.22 -1.33 16 20 C -0.12 -1.81 6.83 31.67 0.22 -1.59 16 21 C -0.13 -2.14 6.61 31.32 0.21 -1.93 16 22 C 0.10 4.27 6.59 86.42 0.57 4.84 16 23 C 0.17 8.45 5.51 86.42 0.48 8.93 16 24 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 25 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.08 2.81 7.93 -2.39 -0.02 2.79 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.12 2.19 5.91 -2.39 -0.01 2.18 16 29 H 0.10 1.98 7.72 -2.39 -0.02 1.96 16 30 H 0.11 1.91 7.87 -2.38 -0.02 1.89 16 31 H 0.09 1.20 7.81 -2.39 -0.02 1.18 16 32 H 0.05 1.21 8.08 -2.39 -0.02 1.19 16 33 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.25 7.95 -2.39 -0.02 1.23 16 40 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.07 3.05 7.00 -2.38 -0.02 3.03 16 42 H 0.07 3.85 6.00 -2.39 -0.01 3.83 16 43 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 Total: -1.00 -72.85 339.72 3.18 -69.66 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.97 Total: 11.97 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 5.38 Total: 21.09 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -4.23 Total: -110.20 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.97 Total: -38.27 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -72.85 3.18 -69.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408216355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.131 kcal (2) G-P(sol) polarization free energy of solvation -72.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds