Wall clock time and date at job start Fri Apr 10 2020 17:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86799 * 120.00106 * 2 1 4 4 H 1.48500 * 109.47019 * 264.76037 * 3 2 1 5 5 H 1.48497 * 109.46916 * 24.76276 * 3 2 1 6 6 H 1.48504 * 109.46877 * 144.76638 * 3 2 1 7 7 C 1.40054 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99711 * 350.18489 * 7 2 1 9 9 C 1.46372 * 120.00062 * 170.18313 * 7 2 1 10 10 O 1.21691 * 119.99571 * 342.47870 * 9 7 2 11 11 N 1.34774 * 120.00177 * 162.47181 * 9 7 2 12 12 C 1.46920 * 120.63015 * 174.54239 * 11 9 7 13 13 C 1.53199 * 108.77107 * 126.67111 * 12 11 9 14 14 C 1.53036 * 109.31166 * 54.63754 * 13 12 11 15 15 C 1.53007 * 109.45760 * 178.61513 * 14 13 12 16 16 N 1.46908 * 109.46748 * 295.06607 * 15 14 13 17 17 C 1.47012 * 111.00059 * 293.63200 * 16 15 14 18 18 C 1.53095 * 109.26074 * 177.61106 * 17 16 15 19 19 O 1.43013 * 109.25918 * 56.84860 * 18 17 16 20 20 C 1.43022 * 113.73814 * 301.33536 * 19 18 17 21 21 C 1.47012 * 110.99572 * 170.00160 * 16 15 14 22 22 C 1.53033 * 109.53783 * 298.62870 * 14 13 12 23 23 C 1.46930 * 120.62884 * 354.82962 * 11 9 7 24 24 H 0.97008 * 119.99792 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.58937 * 246.45610 * 12 11 9 26 26 H 1.09001 * 109.58980 * 6.88577 * 12 11 9 27 27 H 1.08994 * 109.49602 * 294.67689 * 13 12 11 28 28 H 1.09010 * 109.51911 * 174.60044 * 13 12 11 29 29 H 1.09003 * 109.46570 * 58.65678 * 14 13 12 30 30 H 1.08997 * 109.47286 * 55.05962 * 15 14 13 31 31 H 1.09002 * 109.47152 * 175.06801 * 15 14 13 32 32 H 1.08997 * 109.50659 * 297.55049 * 17 16 15 33 33 H 1.09006 * 109.50731 * 57.67354 * 17 16 15 34 34 H 1.09004 * 109.50112 * 296.91682 * 18 17 16 35 35 H 1.08998 * 109.54273 * 176.80835 * 18 17 16 36 36 H 1.09000 * 109.50475 * 298.73283 * 20 19 18 37 37 H 1.09001 * 109.53886 * 178.62650 * 20 19 18 38 38 H 1.08999 * 109.50948 * 302.32380 * 21 16 15 39 39 H 1.08998 * 109.51093 * 62.41411 * 21 16 15 40 40 H 1.09003 * 109.50200 * 301.42076 * 22 14 13 41 41 H 1.08999 * 109.49655 * 181.31876 * 22 14 13 42 42 H 1.09003 * 109.58849 * 353.11400 * 23 11 9 43 43 H 1.09002 * 109.58657 * 113.39753 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5990 1.9824 -1.3942 5 1 1.3872 2.6820 0.5864 6 1 3.4786 1.4745 0.8078 7 6 2.0069 -1.2129 -0.0005 8 1 1.4787 -2.1414 0.1585 9 6 3.4546 -1.2222 -0.2167 10 8 4.0031 -0.2516 -0.7044 11 7 4.1800 -2.3056 0.1246 12 6 5.6123 -2.3782 -0.1943 13 6 6.3876 -2.6948 1.0885 14 6 5.8195 -3.9666 1.7224 15 6 6.6139 -4.3051 2.9855 16 7 7.9976 -4.6360 2.6197 17 6 8.0527 -5.8788 1.8363 18 6 9.5020 -6.1537 1.4266 19 8 10.3198 -6.2156 2.5981 20 6 10.2903 -5.0213 3.3846 21 6 8.8489 -4.7350 3.8141 22 6 4.3504 -3.7437 2.0885 23 6 3.5520 -3.4392 0.8171 24 1 -0.4850 0.8401 0.0004 25 1 5.7838 -3.1654 -0.9286 26 1 5.9461 -1.4217 -0.5964 27 1 6.2888 -1.8643 1.7875 28 1 7.4404 -2.8462 0.8499 29 1 5.8961 -4.7911 1.0136 30 1 6.6111 -3.4469 3.6574 31 1 6.1559 -5.1591 3.4847 32 1 7.6820 -6.7067 2.4406 33 1 7.4357 -5.7741 0.9438 34 1 9.8551 -5.3519 0.7781 35 1 9.5565 -7.1032 0.8941 36 1 10.6664 -4.1866 2.7931 37 1 10.9146 -5.1515 4.2686 38 1 8.8133 -3.7954 4.3654 39 1 8.4906 -5.5442 4.4505 40 1 4.2707 -2.9034 2.7782 41 1 3.9530 -4.6419 2.5612 42 1 2.5264 -3.1826 1.0824 43 1 3.5531 -4.3121 0.1644 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408226132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:20 Heat of formation + Delta-G solvation = -89.894187 kcal Electronic energy + Delta-G solvation = -23093.290864 eV Core-core repulsion = 19751.725550 eV Total energy + Delta-G solvation = -3341.565314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.94507 -38.80294 -36.93686 -35.36439 -32.82698 -32.34625 -31.39566 -30.64575 -28.43987 -26.63735 -25.18506 -24.29132 -22.66058 -22.23224 -20.68873 -20.09503 -18.83987 -16.90121 -16.59561 -16.33766 -15.92475 -15.37759 -15.25881 -15.02709 -14.80218 -14.28256 -14.09068 -13.99993 -13.81078 -13.02059 -12.87838 -12.64366 -12.33845 -12.19069 -11.91269 -11.87928 -11.64450 -11.62747 -11.42990 -10.95062 -10.87036 -10.65794 -10.53146 -10.38351 -10.15807 -10.02965 -9.86038 -9.41515 -8.99657 -8.54992 -7.90253 -7.48620 -6.60817 -4.80619 3.45974 3.49174 3.50752 3.66380 3.71302 4.20207 4.28966 4.56594 4.60564 4.70489 4.75046 4.89725 4.95240 5.04889 5.12587 5.18399 5.28437 5.38046 5.44047 5.50949 5.52975 5.56449 5.63264 5.69829 5.73126 5.78695 5.83314 5.98954 6.17958 6.32496 6.35980 6.48013 6.49010 6.52061 6.70700 6.77625 6.83805 6.89539 7.13403 7.69954 7.90967 8.34518 8.74782 9.17733 10.07501 10.40627 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036456 B = 0.003638 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.872632 B = 7695.376721 C = 7853.458141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.103 3.897 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.320 1.320 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.090 0.910 9 C 0.556 3.444 10 O -0.618 6.618 11 N -0.631 5.631 12 C 0.116 3.884 13 C -0.115 4.115 14 C -0.080 4.080 15 C 0.061 3.939 16 N -0.533 5.533 17 C 0.015 3.985 18 C 0.063 3.937 19 O -0.389 6.389 20 C 0.064 3.936 21 C 0.018 3.982 22 C -0.129 4.129 23 C 0.123 3.877 24 H 0.281 0.719 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.040 0.960 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.546 -12.420 7.511 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.115 4.115 3 Si 0.795 3.205 4 H -0.203 1.203 5 H -0.251 1.251 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.108 0.892 9 C 0.365 3.635 10 O -0.510 6.510 11 N -0.366 5.366 12 C -0.007 4.007 13 C -0.154 4.154 14 C -0.099 4.099 15 C -0.066 4.066 16 N -0.258 5.258 17 C -0.113 4.113 18 C -0.014 4.014 19 O -0.307 6.307 20 C -0.013 4.013 21 C -0.111 4.111 22 C -0.168 4.168 23 C -0.001 4.001 24 H 0.091 0.909 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.921 -11.678 7.018 20.955 hybrid contribution -0.314 0.091 0.535 0.627 sum 15.608 -11.587 7.553 20.854 Atomic orbital electron populations 1.69568 1.07909 1.29895 1.38660 1.25727 0.94680 1.01915 0.89140 0.85301 0.77710 0.77727 0.79731 1.20256 1.25121 1.19322 1.20758 0.89211 0.95800 1.51281 0.89239 1.18345 0.88032 0.79988 0.77160 1.90214 1.73495 1.34826 1.52450 1.47711 1.07734 1.19228 1.61879 1.21266 0.82532 1.01583 0.95353 1.21828 0.99308 0.96583 0.97679 1.21150 0.94355 0.98527 0.95875 1.22240 0.86756 0.99904 0.97712 1.62186 1.10177 1.32968 1.20499 1.22836 0.98185 0.90867 0.99411 1.22677 0.88993 1.02282 0.87402 1.87967 1.67769 1.37545 1.37451 1.22654 0.95312 0.87823 0.95510 1.22769 0.94321 1.01651 0.92331 1.21969 0.94439 1.01339 0.99014 1.21431 0.98357 0.88753 0.91577 0.90868 0.93922 0.89832 0.92213 0.90903 0.91442 0.90600 0.94859 0.94169 0.89074 0.92138 0.88580 0.92185 0.88655 0.89641 0.94184 0.91498 0.91914 0.88396 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.68 13.92 55.55 0.77 -22.90 16 2 C 0.10 2.95 5.52 -17.36 -0.10 2.86 16 3 Si 0.96 25.63 25.83 -169.99 -4.39 21.24 16 4 H -0.28 -7.60 7.11 56.52 0.40 -7.20 16 5 H -0.32 -8.02 7.11 56.52 0.40 -7.62 16 6 H -0.27 -7.44 6.82 56.52 0.39 -7.05 16 7 C -0.53 -15.09 9.08 -35.63 -0.32 -15.41 16 8 H 0.09 2.50 6.42 -52.48 -0.34 2.16 16 9 C 0.56 14.94 7.21 -12.99 -0.09 14.85 16 10 O -0.62 -18.17 12.12 5.20 0.06 -18.11 16 11 N -0.63 -13.64 2.97 -174.42 -0.52 -14.16 16 12 C 0.12 2.14 6.44 -3.71 -0.02 2.12 16 13 C -0.12 -1.73 5.26 -26.61 -0.14 -1.87 16 14 C -0.08 -1.03 2.08 -90.58 -0.19 -1.22 16 15 C 0.06 0.68 4.35 -3.82 -0.02 0.66 16 16 N -0.53 -5.61 4.15 -234.30 -0.97 -6.58 16 17 C 0.02 0.15 5.44 -3.71 -0.02 0.13 16 18 C 0.06 0.58 7.01 37.21 0.26 0.84 16 19 O -0.39 -4.12 10.83 -35.23 -0.38 -4.50 16 20 C 0.06 0.56 7.01 37.21 0.26 0.82 16 21 C 0.02 0.16 5.64 -3.71 -0.02 0.14 16 22 C -0.13 -1.84 5.36 -26.61 -0.14 -1.98 16 23 C 0.12 2.19 6.27 -3.71 -0.02 2.17 16 24 H 0.28 7.39 8.29 -40.82 -0.34 7.05 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.08 1.73 7.00 -51.93 -0.36 1.36 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.01 7.71 -51.92 -0.40 0.60 16 29 H 0.07 0.84 6.30 -51.93 -0.33 0.51 16 30 H 0.08 0.86 8.04 -51.93 -0.42 0.45 16 31 H 0.03 0.36 8.12 -51.93 -0.42 -0.07 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.87 6.29 -51.93 -0.33 0.54 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 1.93 5.61 -51.93 -0.29 1.63 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -32.36 328.96 -8.14 -40.51 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -7.11 Total: -4.54 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.57 Total: 4.10 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.72 Total: -43.65 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.32 Total: -22.61 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.39 Total: 21.24 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.36 -8.14 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408226132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.389 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds