Wall clock time and date at job start Fri Apr 10 2020 17:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 119.99893 * 2 1 4 4 H 1.48499 * 109.46713 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47403 * 299.99434 * 3 2 1 6 6 H 1.48499 * 109.46963 * 60.00161 * 3 2 1 7 7 C 1.40043 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99916 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00361 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99903 * 359.97438 * 9 7 2 11 11 N 1.34779 * 120.00032 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99682 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47170 * 186.75099 * 12 11 9 14 14 N 1.46900 * 109.54564 * 177.42915 * 13 12 11 15 15 C 1.48554 * 111.00045 * 56.91158 * 14 13 12 16 16 C 1.54380 * 104.70235 * 200.89994 * 15 14 13 17 17 C 1.54567 * 104.90788 * 23.88182 * 16 15 14 18 18 C 1.48565 * 110.99887 * 301.49527 * 14 13 12 19 19 C 1.53178 * 109.54226 * 297.60659 * 13 12 11 20 20 C 1.53106 * 109.15816 * 63.06443 * 19 13 12 21 21 O 1.42901 * 109.48637 * 57.47126 * 20 19 13 22 22 C 1.42900 * 114.10078 * 298.88729 * 21 20 19 23 23 C 1.53097 * 109.41177 * 61.16050 * 22 21 20 24 24 H 0.97001 * 120.00049 * 0.02562 * 1 2 3 25 25 H 0.96994 * 120.00428 * 0.02562 * 11 9 7 26 26 H 1.09005 * 109.47537 * 66.75231 * 12 11 9 27 27 H 1.09000 * 109.47329 * 306.75260 * 12 11 9 28 28 H 1.08995 * 110.41292 * 319.74277 * 15 14 13 29 29 H 1.09004 * 110.41145 * 82.06735 * 15 14 13 30 30 H 1.08999 * 110.32265 * 142.80838 * 16 15 14 31 31 H 1.08994 * 110.32490 * 265.02282 * 16 15 14 32 32 H 1.08999 * 110.30495 * 241.07967 * 17 16 15 33 33 H 1.09007 * 110.40440 * 118.93402 * 17 16 15 34 34 H 1.09002 * 110.41314 * 277.81881 * 18 14 13 35 35 H 1.08999 * 110.41105 * 40.14094 * 18 14 13 36 36 H 1.09003 * 109.51907 * 182.87806 * 19 13 12 37 37 H 1.08998 * 109.52249 * 303.06736 * 19 13 12 38 38 H 1.08996 * 109.40184 * 297.49250 * 20 19 13 39 39 H 1.08996 * 109.49292 * 177.50493 * 20 19 13 40 40 H 1.08997 * 109.48301 * 301.18207 * 22 21 20 41 41 H 1.09000 * 109.48294 * 181.13940 * 22 21 20 42 42 H 1.09000 * 109.51996 * 182.48503 * 23 22 21 43 43 H 1.09005 * 109.52356 * 62.29666 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8819 2.3964 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 1.2164 -4.9164 0.0011 13 6 2.2019 -6.0743 0.1706 14 7 1.4637 -7.3429 0.2331 15 6 0.6218 -7.5291 -0.9766 16 6 -0.4519 -8.5541 -0.5527 17 6 -0.5370 -8.4278 0.9854 18 6 0.4921 -7.3386 1.3569 19 6 3.1689 -6.1022 -1.0171 20 6 3.9906 -4.8104 -1.0264 21 8 4.6842 -4.6777 0.2159 22 6 3.8276 -4.5980 1.3569 23 6 3.0009 -5.8821 1.4633 24 1 -0.4850 0.8400 -0.0004 25 1 2.9189 -3.6478 0.0009 26 1 0.6830 -5.0285 -0.9429 27 1 0.5025 -4.9234 0.8248 28 1 0.1554 -6.5868 -1.2639 29 1 1.2195 -7.9227 -1.7988 30 1 -1.4110 -8.3080 -1.0082 31 1 -0.1455 -9.5616 -0.8342 32 1 -0.2737 -9.3742 1.4578 33 1 -1.5386 -8.1207 1.2867 34 1 0.9916 -7.5906 2.2923 35 1 0.0068 -6.3657 1.4361 36 1 3.8380 -6.9574 -0.9221 37 1 2.6033 -6.1824 -1.9455 38 1 3.3246 -3.9585 -1.1636 39 1 4.7114 -4.8436 -1.8433 40 1 3.1594 -3.7434 1.2508 41 1 4.4309 -4.4785 2.2568 42 1 2.3153 -5.8051 2.3072 43 1 3.6665 -6.7328 1.6099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408313492.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:26:29 Heat of formation + Delta-G solvation = -12.017893 kcal Electronic energy + Delta-G solvation = -24370.267623 eV Core-core repulsion = 21032.079279 eV Total energy + Delta-G solvation = -3338.188345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16523 -38.36343 -36.85205 -34.43337 -32.71941 -32.02677 -31.13236 -29.53772 -28.74270 -27.28542 -25.48351 -23.47465 -23.38931 -21.65453 -20.45321 -19.67515 -19.33674 -17.03092 -16.35425 -15.94129 -15.79014 -15.35454 -14.87219 -14.76196 -14.61002 -14.07817 -14.04487 -13.83273 -13.42017 -12.65603 -12.51097 -12.22823 -12.14615 -12.12769 -11.80198 -11.54207 -11.37574 -11.28458 -11.18945 -11.07685 -11.00509 -10.89217 -10.57572 -10.38592 -10.24406 -10.15093 -9.76049 -9.02230 -8.90510 -8.30687 -7.65292 -7.45262 -6.24544 -4.71556 3.10141 3.18942 3.23691 3.90566 4.08186 4.15621 4.50257 4.60553 4.63753 4.79476 4.94964 4.97808 5.11012 5.20499 5.23982 5.34972 5.50668 5.55596 5.58173 5.68409 5.75605 5.79394 5.82890 5.84113 5.87546 5.91699 5.98557 6.02450 6.07186 6.10552 6.23109 6.24452 6.34047 6.42685 6.56421 6.92102 7.10360 7.37600 7.44710 7.75446 7.95050 8.23087 8.96385 9.36779 10.51690 10.69803 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021437 B = 0.005534 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.869232 B = 5058.070346 C = 5815.487898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.544 3.456 10 O -0.578 6.578 11 N -0.776 5.776 12 C 0.101 3.899 13 C 0.089 3.911 14 N -0.493 5.493 15 C 0.020 3.980 16 C -0.122 4.122 17 C -0.122 4.122 18 C 0.020 3.980 19 C -0.132 4.132 20 C 0.014 3.986 21 O -0.382 6.382 22 C 0.002 3.998 23 C -0.130 4.130 24 H 0.268 0.732 25 H 0.402 0.598 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 -13.565 0.296 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.087 0.913 9 C 0.349 3.651 10 O -0.461 6.461 11 N -0.450 5.450 12 C -0.025 4.025 13 C -0.002 4.002 14 N -0.216 5.216 15 C -0.108 4.108 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.108 4.108 19 C -0.170 4.170 20 C -0.063 4.063 21 O -0.301 6.301 22 C -0.075 4.075 23 C -0.168 4.168 24 H 0.079 0.921 25 H 0.254 0.746 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.668 -13.886 0.365 14.367 hybrid contribution -0.071 1.287 -0.105 1.294 sum 3.597 -12.599 0.260 13.105 Atomic orbital electron populations 1.70029 1.07093 1.27264 1.35084 1.25698 0.94609 1.00335 0.92494 0.86326 0.80639 0.81653 0.78284 1.18593 1.20104 1.20094 1.20939 0.93619 0.89355 1.54457 0.91328 1.18387 0.87412 0.82713 0.76609 1.90596 1.14163 1.86969 1.54333 1.48262 1.10193 1.05159 1.81389 1.21635 0.94957 0.84966 1.00953 1.21416 0.93931 0.88459 0.96352 1.65704 1.22523 1.30630 1.02744 1.23252 0.94487 0.98964 0.94110 1.22315 0.98531 0.99425 0.95771 1.22315 0.98813 0.99019 0.95911 1.23266 0.93228 0.98851 0.95468 1.22137 0.98037 0.99310 0.97561 1.23447 0.97442 0.98585 0.86839 1.87933 1.33489 1.94319 1.14386 1.23788 0.95212 0.99595 0.88921 1.22102 0.98962 0.99175 0.96591 0.92101 0.74644 0.93183 0.92223 0.92450 0.90300 0.91437 0.91343 0.91361 0.91442 0.90264 0.92350 0.90644 0.91042 0.88343 0.88949 0.86849 0.89166 0.91052 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.70 11.83 55.55 0.66 -22.05 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 19.92 29.56 -169.99 -5.02 14.90 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.55 -15.22 9.54 -35.63 -0.34 -15.56 16 8 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 9 C 0.54 15.20 7.74 -12.99 -0.10 15.10 16 10 O -0.58 -18.45 15.00 5.20 0.08 -18.37 16 11 N -0.78 -17.04 2.31 -61.72 -0.14 -17.18 16 12 C 0.10 1.94 3.85 -4.04 -0.02 1.93 16 13 C 0.09 1.36 0.45 -131.42 -0.06 1.30 16 14 N -0.49 -6.78 5.19 -214.17 -1.11 -7.89 16 15 C 0.02 0.25 5.32 -2.19 -0.01 0.24 16 16 C -0.12 -1.33 7.02 -25.18 -0.18 -1.51 16 17 C -0.12 -1.34 7.01 -25.19 -0.18 -1.52 16 18 C 0.02 0.26 5.27 -2.18 -0.01 0.24 16 19 C -0.13 -1.91 4.78 -26.58 -0.13 -2.04 16 20 C 0.01 0.23 6.37 37.21 0.24 0.46 16 21 O -0.38 -6.38 10.67 -35.23 -0.38 -6.76 16 22 C 0.00 0.04 6.38 37.21 0.24 0.27 16 23 C -0.13 -1.94 4.74 -26.59 -0.13 -2.07 16 24 H 0.27 7.19 8.29 -40.82 -0.34 6.86 16 25 H 0.40 8.04 1.75 -40.82 -0.07 7.96 16 26 H 0.05 1.02 6.13 -51.93 -0.32 0.70 16 27 H 0.06 1.25 5.87 -51.93 -0.30 0.94 16 28 H 0.06 0.84 5.56 -51.93 -0.29 0.55 16 29 H 0.08 0.94 7.77 -51.93 -0.40 0.53 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.08 0.97 7.76 -51.93 -0.40 0.57 16 35 H 0.06 0.88 5.54 -51.93 -0.29 0.59 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.99 7.20 -51.93 -0.37 0.61 16 38 H 0.10 1.79 4.63 -51.93 -0.24 1.55 16 39 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.11 2.17 4.37 -60.25 -0.26 1.90 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.04 7.17 -51.93 -0.37 0.67 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -32.68 314.88 -8.20 -40.87 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -6.26 Total: 12.52 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.77 Total: -0.79 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.60 Total: -47.12 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.30 Total: -25.13 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.68 -8.20 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408313492.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.855 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds